Wall clock time and date at job start Tue Mar 31 2020 06:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86801 * 120.00111 * 2 1 4 4 H 1.48502 * 109.46993 * 269.99788 * 3 2 1 5 5 H 1.48499 * 109.47210 * 29.99789 * 3 2 1 6 6 H 1.48496 * 109.47173 * 150.00126 * 3 2 1 7 7 C 1.39926 * 119.99713 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99664 * 198.63100 * 7 2 1 9 9 C 1.41405 * 120.00040 * 18.63166 * 7 2 1 10 10 C 1.40786 * 120.20827 * 28.53087 * 9 7 2 11 11 C 1.37659 * 119.89564 * 179.97438 * 10 9 7 12 12 C 1.38501 * 120.32993 * 0.27013 * 11 10 9 13 13 C 1.39323 * 120.42088 * 359.45231 * 12 11 10 14 14 N 1.39703 * 119.95412 * 180.25812 * 13 12 11 15 15 C 1.39993 * 119.99896 * 31.22614 * 14 13 12 16 16 C 1.38876 * 119.98321 * 205.56941 * 15 14 13 17 17 C 1.38300 * 120.00839 * 179.72491 * 16 15 14 18 18 F 1.35097 * 120.00781 * 180.27372 * 17 16 15 19 19 C 1.38965 * 119.98664 * 0.56757 * 17 16 15 20 20 N 1.40317 * 120.01292 * 179.68257 * 19 17 16 21 21 C 1.38971 * 119.98026 * 359.70304 * 19 17 16 22 22 F 1.35100 * 120.00832 * 180.02562 * 21 19 17 23 23 C 1.38299 * 119.98588 * 0.02562 * 21 19 17 24 24 C 1.38341 * 120.08954 * 0.54665 * 13 12 11 25 25 H 0.97006 * 120.00185 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.05370 * 359.95049 * 10 9 7 27 27 H 1.08005 * 119.83226 * 179.97438 * 11 10 9 28 28 H 1.08006 * 119.79243 * 179.70569 * 12 11 10 29 29 H 0.96993 * 119.99798 * 211.22678 * 14 13 12 30 30 H 1.08002 * 119.99977 * 359.97438 * 16 15 14 31 31 H 0.97003 * 120.00452 * 180.02562 * 20 19 17 32 32 H 0.96996 * 119.99530 * 0.02562 * 20 19 17 33 33 H 1.08003 * 119.99192 * 179.97438 * 23 21 19 34 34 H 1.08001 * 120.15977 * 179.70889 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4899 2.0464 -1.4001 5 1 1.4398 2.6527 0.7000 6 1 3.5399 1.4401 0.7000 7 6 2.0079 -1.2118 0.0005 8 1 3.0454 -1.2362 0.2994 9 6 1.3564 -2.4045 -0.3902 10 6 0.2894 -2.3609 -1.3076 11 6 -0.3399 -3.5260 -1.6839 12 6 0.0676 -4.7417 -1.1601 13 6 1.1257 -4.8010 -0.2557 14 7 1.5322 -6.0331 0.2624 15 6 1.4047 -7.1937 -0.5100 16 6 1.2871 -8.4307 0.1101 17 6 1.1554 -9.5770 -0.6525 18 9 1.0354 -10.7797 -0.0491 19 6 1.1528 -9.4919 -2.0395 20 7 1.0259 -10.6553 -2.8138 21 6 1.2762 -8.2544 -2.6596 22 9 1.2731 -8.1710 -4.0080 23 6 1.4021 -7.1082 -1.8961 24 6 1.7705 -3.6410 0.1345 25 1 -0.4851 0.8401 -0.0004 26 1 -0.0352 -1.4150 -1.7152 27 1 -1.1587 -3.4914 -2.3875 28 1 -0.4354 -5.6499 -1.4578 29 1 1.9026 -6.0844 1.1573 30 1 1.2943 -8.4973 1.1880 31 1 1.0244 -10.5958 -3.7820 32 1 0.9397 -11.5189 -2.3808 33 1 1.4984 -6.1464 -2.3779 34 1 2.5878 -3.6852 0.8391 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210911563.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:58 Heat of formation + Delta-G solvation = -44.060113 kcal Electronic energy + Delta-G solvation = -21649.128300 eV Core-core repulsion = 17989.026707 eV Total energy + Delta-G solvation = -3660.101593 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -48.86772 -48.77013 -39.46304 -37.65654 -35.63605 -33.80012 -32.75412 -30.31459 -29.82688 -28.70411 -26.60421 -25.31750 -23.00980 -22.23065 -20.87160 -20.46441 -18.14639 -18.07579 -17.19574 -16.98007 -15.97877 -15.89254 -15.50111 -15.16561 -15.13739 -15.09014 -14.79594 -14.71346 -14.41361 -13.45004 -13.00560 -12.66477 -12.36525 -12.23957 -12.10549 -11.94754 -11.66083 -11.46222 -11.16425 -11.06396 -10.62996 -10.53954 -9.95495 -9.64430 -9.34887 -9.00919 -8.62859 -7.58168 -7.49907 -6.82025 -6.40661 -4.43257 1.12143 1.43498 2.74147 2.93884 3.05994 3.09004 3.16873 3.58481 3.69184 3.76209 3.91186 4.15031 4.57809 4.60799 4.82229 5.27025 5.44167 5.61799 5.77682 5.95345 6.08865 6.19860 6.31786 6.38060 6.67729 6.85812 6.93665 6.98278 7.15824 7.17800 7.31885 7.59929 7.62130 7.71735 7.96968 8.00693 8.25463 8.30355 8.58859 8.84267 8.90276 10.15496 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.033827 B = 0.003389 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.530596 B = 8260.713489 C = 8646.465498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.079 3.921 3 Si 0.907 3.093 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.468 4.468 8 H 0.078 0.922 9 C 0.134 3.866 10 C -0.175 4.175 11 C -0.084 4.084 12 C -0.268 4.268 13 C 0.180 3.820 14 N -0.680 5.680 15 C 0.215 3.785 16 C -0.185 4.185 17 C 0.079 3.921 18 F -0.139 7.139 19 C 0.105 3.895 20 N -0.879 5.879 21 C 0.083 3.917 22 F -0.136 7.136 23 C -0.162 4.162 24 C -0.254 4.254 25 H 0.281 0.719 26 H 0.111 0.889 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.404 0.596 30 H 0.138 0.862 31 H 0.401 0.599 32 H 0.400 0.600 33 H 0.153 0.847 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.616 -13.629 -2.402 13.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.497 4.497 8 H 0.097 0.903 9 C 0.131 3.869 10 C -0.195 4.195 11 C -0.103 4.103 12 C -0.290 4.290 13 C 0.086 3.914 14 N -0.302 5.302 15 C 0.111 3.889 16 C -0.209 4.209 17 C 0.055 3.945 18 F -0.118 7.118 19 C 0.000 4.000 20 N -0.423 5.423 21 C 0.059 3.941 22 F -0.115 7.115 23 C -0.185 4.185 24 C -0.277 4.277 25 H 0.092 0.908 26 H 0.129 0.871 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.239 0.761 30 H 0.156 0.844 31 H 0.230 0.770 32 H 0.229 0.771 33 H 0.171 0.829 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.361 -13.362 -2.456 13.654 hybrid contribution 0.318 0.260 0.114 0.426 sum 1.679 -13.101 -2.342 13.414 Atomic orbital electron populations 1.69835 1.07583 1.29354 1.34847 1.25874 0.94680 1.01215 0.92157 0.86339 0.80522 0.80662 0.79362 1.19235 1.20359 1.18630 1.19534 0.98498 0.91261 1.40448 0.90347 1.17363 0.90243 0.91369 0.87936 1.21197 1.00768 0.96562 1.00940 1.20502 0.98300 0.92694 0.98780 1.20191 1.02403 0.97134 1.09287 1.17422 0.94117 0.83188 0.96686 1.42127 1.67722 1.03223 1.17161 1.16923 0.96083 0.86161 0.89707 1.20465 1.09853 0.90152 1.00419 1.16328 1.09544 0.80846 0.87790 1.91432 1.94118 1.42904 1.83347 1.17386 1.05519 0.87410 0.89666 1.42051 1.86393 1.05516 1.08305 1.16485 1.08880 0.91755 0.76962 1.91450 1.94503 1.96866 1.28670 1.20941 1.06130 0.98653 0.92800 1.20687 1.05885 0.91960 1.09121 0.90813 0.87074 0.89051 0.88825 0.76066 0.84379 0.77001 0.77111 0.82908 0.88648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.02 11.29 55.55 0.63 -19.39 16 2 C 0.08 1.93 5.08 -17.35 -0.09 1.85 16 3 Si 0.91 18.23 29.60 -169.99 -5.03 13.20 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.81 16 7 C -0.47 -12.02 9.03 -37.75 -0.34 -12.36 16 8 H 0.08 1.94 7.91 -52.49 -0.42 1.53 16 9 C 0.13 3.43 5.52 -106.85 -0.59 2.84 16 10 C -0.17 -4.37 8.67 -38.83 -0.34 -4.71 16 11 C -0.08 -1.89 10.01 -39.70 -0.40 -2.29 16 12 C -0.27 -5.74 7.75 -39.08 -0.30 -6.04 16 13 C 0.18 3.75 5.92 -83.83 -0.50 3.26 16 14 N -0.68 -11.50 5.47 -8.41 -0.05 -11.55 16 15 C 0.21 3.36 6.04 -83.66 -0.51 2.85 16 16 C -0.19 -2.52 9.91 -39.32 -0.39 -2.91 16 17 C 0.08 1.07 7.30 -39.29 -0.29 0.78 16 18 F -0.14 -1.78 16.64 2.25 0.04 -1.74 16 19 C 0.10 1.40 6.77 -83.43 -0.57 0.83 16 20 N -0.88 -9.12 9.11 32.56 0.30 -8.83 16 21 C 0.08 1.23 7.30 -39.29 -0.29 0.95 16 22 F -0.14 -1.99 16.64 2.25 0.04 -1.95 16 23 C -0.16 -2.62 7.82 -39.33 -0.31 -2.92 16 24 C -0.25 -5.88 9.70 -38.67 -0.37 -6.26 16 25 H 0.28 6.47 8.30 -40.82 -0.34 6.14 16 26 H 0.11 2.88 6.49 -52.49 -0.34 2.54 16 27 H 0.09 1.85 8.06 -52.48 -0.42 1.43 16 28 H 0.09 1.88 6.53 -52.48 -0.34 1.54 16 29 H 0.40 5.89 8.89 -40.82 -0.36 5.53 16 30 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.40 3.65 8.32 -40.82 -0.34 3.31 16 32 H 0.40 3.49 8.32 -40.82 -0.34 3.15 16 33 H 0.15 2.72 6.32 -52.48 -0.33 2.38 16 34 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 302.15 15.07 4.55 4.55 Total: -1.00 -26.61 302.15 -7.67 -34.28 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -2.87 Total: 15.57 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -5.27 Total: -24.14 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.88 Total: -39.76 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.07 Total: -3.70 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -26.61 -7.67 -34.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210911563.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.779 kcal (2) G-P(sol) polarization free energy of solvation -26.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds