Wall clock time and date at job start Tue Mar 31 2020 06:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86801 * 120.00111 * 2 1 4 4 H 1.48502 * 109.46993 * 269.99788 * 3 2 1 5 5 H 1.48499 * 109.47210 * 29.99789 * 3 2 1 6 6 H 1.48496 * 109.47173 * 150.00126 * 3 2 1 7 7 C 1.39926 * 119.99713 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99664 * 198.63100 * 7 2 1 9 9 C 1.41405 * 120.00040 * 18.63166 * 7 2 1 10 10 C 1.40786 * 120.20827 * 28.53087 * 9 7 2 11 11 C 1.37659 * 119.89564 * 179.97438 * 10 9 7 12 12 C 1.38501 * 120.32993 * 0.27013 * 11 10 9 13 13 C 1.39323 * 120.42088 * 359.45231 * 12 11 10 14 14 N 1.39703 * 119.95412 * 180.25812 * 13 12 11 15 15 C 1.39993 * 119.99896 * 31.22614 * 14 13 12 16 16 C 1.38876 * 119.98321 * 205.56941 * 15 14 13 17 17 C 1.38300 * 120.00839 * 179.72491 * 16 15 14 18 18 F 1.35097 * 120.00781 * 180.27372 * 17 16 15 19 19 C 1.38965 * 119.98664 * 0.56757 * 17 16 15 20 20 N 1.40317 * 120.01292 * 179.68257 * 19 17 16 21 21 C 1.38971 * 119.98026 * 359.70304 * 19 17 16 22 22 F 1.35100 * 120.00832 * 180.02562 * 21 19 17 23 23 C 1.38299 * 119.98588 * 0.02562 * 21 19 17 24 24 C 1.38341 * 120.08954 * 0.54665 * 13 12 11 25 25 H 0.97006 * 120.00185 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.05370 * 359.95049 * 10 9 7 27 27 H 1.08005 * 119.83226 * 179.97438 * 11 10 9 28 28 H 1.08006 * 119.79243 * 179.70569 * 12 11 10 29 29 H 0.96993 * 119.99798 * 211.22678 * 14 13 12 30 30 H 1.08002 * 119.99977 * 359.97438 * 16 15 14 31 31 H 0.97003 * 120.00452 * 180.02562 * 20 19 17 32 32 H 0.96996 * 119.99530 * 0.02562 * 20 19 17 33 33 H 1.08003 * 119.99192 * 179.97438 * 23 21 19 34 34 H 1.08001 * 120.15977 * 179.70889 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4899 2.0464 -1.4001 5 1 1.4398 2.6527 0.7000 6 1 3.5399 1.4401 0.7000 7 6 2.0079 -1.2118 0.0005 8 1 3.0454 -1.2362 0.2994 9 6 1.3564 -2.4045 -0.3902 10 6 0.2894 -2.3609 -1.3076 11 6 -0.3399 -3.5260 -1.6839 12 6 0.0676 -4.7417 -1.1601 13 6 1.1257 -4.8010 -0.2557 14 7 1.5322 -6.0331 0.2624 15 6 1.4047 -7.1937 -0.5100 16 6 1.2871 -8.4307 0.1101 17 6 1.1554 -9.5770 -0.6525 18 9 1.0354 -10.7797 -0.0491 19 6 1.1528 -9.4919 -2.0395 20 7 1.0259 -10.6553 -2.8138 21 6 1.2762 -8.2544 -2.6596 22 9 1.2731 -8.1710 -4.0080 23 6 1.4021 -7.1082 -1.8961 24 6 1.7705 -3.6410 0.1345 25 1 -0.4851 0.8401 -0.0004 26 1 -0.0352 -1.4150 -1.7152 27 1 -1.1587 -3.4914 -2.3875 28 1 -0.4354 -5.6499 -1.4578 29 1 1.9026 -6.0844 1.1573 30 1 1.2943 -8.4973 1.1880 31 1 1.0244 -10.5958 -3.7820 32 1 0.9397 -11.5189 -2.3808 33 1 1.4984 -6.1464 -2.3779 34 1 2.5878 -3.6852 0.8391 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210911563.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:45 Heat of formation + Delta-G solvation = -58.376176 kcal Electronic energy + Delta-G solvation = -21649.749091 eV Core-core repulsion = 17989.026707 eV Total energy + Delta-G solvation = -3660.722384 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 12.30 seconds Orbital eigenvalues (eV) -49.92544 -49.90305 -40.78344 -39.19116 -37.01175 -35.36370 -34.16337 -31.84511 -31.28684 -30.18249 -27.93541 -27.14206 -24.20869 -23.52845 -22.58427 -22.06625 -19.58112 -19.26887 -18.58895 -18.06730 -17.38764 -17.08604 -17.02584 -16.44716 -16.39441 -16.23169 -16.19783 -16.11884 -15.65816 -15.09554 -14.67152 -14.14775 -13.94138 -13.59120 -13.31995 -13.29129 -13.12275 -12.83328 -12.75884 -12.59203 -12.25248 -12.14769 -11.73679 -11.36531 -11.06011 -10.54097 -9.78121 -9.36848 -8.93091 -8.63277 -7.78749 -6.34603 -0.02411 0.24652 0.99816 1.20624 1.40973 1.53289 1.54654 2.22724 2.32892 2.49358 2.77574 2.78069 2.99153 3.46963 3.71278 3.75233 4.11410 4.23921 4.47774 4.63887 4.69834 4.79199 4.93696 5.06977 5.09083 5.15307 5.18688 5.34894 5.49424 5.62012 5.88745 5.97096 6.13513 6.19093 6.34468 6.55197 6.77823 6.82718 6.86508 6.97160 7.09399 8.36566 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.033827 B = 0.003389 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.530596 B = 8260.713489 C = 8646.465498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.039 3.961 3 Si 0.979 3.021 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.258 1.258 7 C -0.504 4.504 8 H 0.076 0.924 9 C 0.107 3.893 10 C -0.204 4.204 11 C -0.084 4.084 12 C -0.266 4.266 13 C 0.197 3.803 14 N -0.677 5.677 15 C 0.194 3.806 16 C -0.164 4.164 17 C 0.076 3.924 18 F -0.132 7.132 19 C 0.120 3.880 20 N -0.865 5.865 21 C 0.071 3.929 22 F -0.138 7.138 23 C -0.171 4.171 24 C -0.271 4.271 25 H 0.288 0.712 26 H 0.092 0.908 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.415 0.585 30 H 0.162 0.838 31 H 0.410 0.590 32 H 0.411 0.589 33 H 0.131 0.869 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.812 -15.615 -2.178 15.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.176 4.176 3 Si 0.800 3.200 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.182 1.182 7 C -0.534 4.534 8 H 0.094 0.906 9 C 0.104 3.896 10 C -0.224 4.224 11 C -0.103 4.103 12 C -0.288 4.288 13 C 0.101 3.899 14 N -0.301 5.301 15 C 0.092 3.908 16 C -0.187 4.187 17 C 0.052 3.948 18 F -0.110 7.110 19 C 0.014 3.986 20 N -0.410 5.410 21 C 0.047 3.953 22 F -0.117 7.117 23 C -0.194 4.194 24 C -0.294 4.294 25 H 0.098 0.902 26 H 0.110 0.890 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.253 0.747 30 H 0.179 0.821 31 H 0.240 0.760 32 H 0.242 0.758 33 H 0.149 0.851 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.558 -15.439 -2.244 15.679 hybrid contribution 0.224 0.553 -0.010 0.596 sum 1.782 -14.886 -2.253 15.161 Atomic orbital electron populations 1.69889 1.08981 1.30555 1.35619 1.26684 0.95399 1.04304 0.91195 0.85256 0.79150 0.76185 0.79433 1.18842 1.19385 1.18205 1.19777 0.98695 0.92552 1.42359 0.90625 1.17694 0.90894 0.92485 0.88510 1.21107 1.02174 0.96676 1.02461 1.20748 0.98391 0.92444 0.98741 1.20384 1.02281 0.97172 1.08915 1.17375 0.92911 0.84221 0.95374 1.41931 1.68062 1.02267 1.17806 1.16940 0.98132 0.86296 0.89397 1.20626 1.07329 0.89143 1.01627 1.16306 1.09677 0.81094 0.87763 1.91460 1.94038 1.42356 1.83191 1.17437 1.03512 0.87707 0.89989 1.42110 1.84907 1.05163 1.08783 1.16436 1.10044 0.91956 0.76899 1.91444 1.94605 1.96898 1.28708 1.20832 1.06944 0.98299 0.93292 1.20805 1.06540 0.92203 1.09806 0.90193 0.88952 0.87094 0.87190 0.74708 0.82074 0.76037 0.75812 0.85073 0.88059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.05 11.29 21.82 0.25 -42.81 16 2 C 0.04 1.98 5.08 85.25 0.43 2.41 16 3 Si 0.98 37.99 29.60 68.60 2.03 40.02 16 4 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 5 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16 6 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 7 C -0.50 -26.90 9.03 23.46 0.21 -26.69 16 8 H 0.08 3.90 7.91 -2.91 -0.02 3.88 16 9 C 0.11 5.69 5.52 -21.31 -0.12 5.57 16 10 C -0.20 -10.62 8.67 22.76 0.20 -10.42 16 11 C -0.08 -3.86 10.01 22.20 0.22 -3.64 16 12 C -0.27 -11.27 7.75 22.59 0.18 -11.09 16 13 C 0.20 8.19 5.92 38.17 0.23 8.42 16 14 N -0.68 -21.98 5.47 -180.53 -0.99 -22.97 16 15 C 0.19 5.70 6.04 38.14 0.23 5.93 16 16 C -0.16 -3.96 9.91 22.44 0.22 -3.74 16 17 C 0.08 1.80 7.30 22.46 0.16 1.96 16 18 F -0.13 -2.88 16.64 44.97 0.75 -2.13 16 19 C 0.12 2.86 6.77 38.13 0.26 3.12 16 20 N -0.87 -15.18 9.11 -50.90 -0.46 -15.65 16 21 C 0.07 1.98 7.30 22.46 0.16 2.14 16 22 F -0.14 -3.84 16.64 44.97 0.75 -3.09 16 23 C -0.17 -5.32 7.82 22.44 0.18 -5.14 16 24 C -0.27 -12.80 9.70 22.86 0.22 -12.58 16 25 H 0.29 13.59 8.30 -92.70 -0.77 12.82 16 26 H 0.09 5.05 6.49 -2.91 -0.02 5.03 16 27 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 28 H 0.11 4.28 6.53 -2.91 -0.02 4.26 16 29 H 0.42 11.44 8.89 -92.71 -0.82 10.61 16 30 H 0.16 3.13 8.06 -2.91 -0.02 3.10 16 31 H 0.41 6.21 8.32 -92.71 -0.77 5.44 16 32 H 0.41 5.71 8.32 -92.71 -0.77 4.94 16 33 H 0.13 4.67 6.32 -2.91 -0.02 4.65 16 34 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -58.16 302.15 3.94 -54.22 By element: Atomic # 1 Polarization: 37.31 SS G_CDS: -1.16 Total: 36.15 kcal Atomic # 6 Polarization: -46.54 SS G_CDS: 2.78 Total: -43.75 kcal Atomic # 7 Polarization: -80.22 SS G_CDS: -1.21 Total: -81.42 kcal Atomic # 9 Polarization: -6.71 SS G_CDS: 1.50 Total: -5.22 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.03 Total: 40.02 kcal Total: -58.16 3.94 -54.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210911563.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.153 kcal (2) G-P(sol) polarization free energy of solvation -58.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.30 seconds