Wall clock time and date at job start Tue Mar 31 2020 07:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38155 * 120.35148 * 2 1 4 4 N 1.31955 * 120.95485 * 179.97438 * 3 2 1 5 5 C 1.31935 * 121.76317 * 0.02562 * 4 3 2 6 6 F 1.35105 * 119.69874 * 179.97438 * 5 4 3 7 7 C 1.39209 * 120.60636 * 0.02562 * 5 4 3 8 8 N 1.39867 * 120.50777 * 179.97438 * 7 5 4 9 9 C 1.39785 * 120.00424 * 187.89478 * 8 7 5 10 10 C 1.39433 * 119.91775 * 41.70851 * 9 8 7 11 11 C 1.38349 * 120.46643 * 179.97438 * 10 9 8 12 12 C 1.38021 * 120.29081 * 0.04115 * 11 10 9 13 13 F 1.35100 * 120.08736 * 179.97438 * 12 11 10 14 14 C 1.41020 * 119.82054 * 359.97438 * 12 11 10 15 15 C 1.41294 * 120.22280 * 179.72396 * 14 12 11 16 16 H 1.08002 * 120.00107 * 330.68202 * 15 14 12 17 17 C 1.39915 * 119.99995 * 150.67280 * 15 14 12 18 18 N 1.30856 * 119.99895 * 350.77503 * 17 15 14 19 19 Si 1.86795 * 120.00094 * 170.77405 * 17 15 14 20 20 H 1.48506 * 109.47234 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47474 * 120.00246 * 19 17 15 22 22 H 1.48504 * 109.47264 * 240.00525 * 19 17 15 23 23 C 1.38197 * 119.91589 * 221.72909 * 9 8 7 24 24 C 1.38626 * 120.35323 * 180.30315 * 2 1 3 25 25 H 1.09004 * 109.46797 * 90.00076 * 1 2 3 26 26 H 1.09003 * 109.47033 * 209.99755 * 1 2 3 27 27 H 1.08997 * 109.47204 * 329.99759 * 1 2 3 28 28 H 1.08009 * 119.52470 * 0.02562 * 3 2 1 29 29 H 0.97008 * 119.99272 * 7.89508 * 8 7 5 30 30 H 1.08003 * 119.76848 * 0.02562 * 10 9 8 31 31 H 1.08002 * 119.85840 * 180.02562 * 11 10 9 32 32 H 0.97010 * 120.00189 * 179.97438 * 18 17 15 33 33 H 1.07998 * 120.14424 * 0.02562 * 23 9 8 34 34 H 1.07994 * 120.80527 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2051 1.1922 0.0000 4 7 3.5246 1.2061 0.0005 5 6 4.2309 0.0917 0.0005 6 9 5.5805 0.1546 0.0005 7 6 3.5983 -1.1483 -0.0005 8 7 4.3491 -2.3284 -0.0010 9 6 3.7127 -3.5617 -0.1684 10 6 2.6932 -3.6961 -1.1100 11 6 2.0560 -4.9116 -1.2853 12 6 2.4230 -6.0056 -0.5281 13 9 1.7977 -7.1904 -0.7024 14 6 3.4524 -5.8833 0.4280 15 6 3.8309 -6.9962 1.2118 16 1 3.1054 -7.7593 1.4522 17 6 5.1458 -7.1099 1.6765 18 7 6.0669 -6.2888 1.2410 19 14 5.5863 -8.4337 2.9186 20 1 4.3745 -9.2265 3.2479 21 1 6.6212 -9.3290 2.3419 22 1 6.1133 -7.7985 4.1532 23 6 4.0954 -4.6446 0.6002 24 6 2.2075 -1.1962 -0.0063 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6631 2.1264 0.0004 29 1 5.3115 -2.2909 0.1147 30 1 2.3993 -2.8456 -1.7072 31 1 1.2678 -5.0047 -2.0178 32 1 6.9784 -6.3673 1.5634 33 1 4.8846 -4.5400 1.3300 34 1 1.6866 -2.1422 -0.0117 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211510106.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:42 Heat of formation + Delta-G solvation = -37.053608 kcal Electronic energy + Delta-G solvation = -22072.951497 eV Core-core repulsion = 18413.153729 eV Total energy + Delta-G solvation = -3659.797768 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.66140 -47.36159 -40.15832 -38.10579 -35.42718 -33.67959 -33.33921 -30.41589 -29.97356 -27.65492 -26.82355 -25.60480 -23.41467 -22.19430 -21.34508 -20.42912 -17.91143 -17.80433 -17.54722 -16.23855 -16.05679 -15.90488 -15.66903 -15.00804 -14.56012 -14.37326 -14.14301 -13.78493 -13.58465 -13.18252 -13.02676 -12.81951 -12.57073 -12.50112 -12.13202 -11.97327 -11.83137 -11.66780 -11.40844 -11.21256 -10.88143 -10.45810 -10.30499 -9.78696 -9.54970 -9.47366 -9.03238 -8.06342 -7.75665 -7.04579 -6.68182 -4.65165 1.14247 1.39393 2.43998 2.56795 2.97573 2.99678 3.03502 3.55121 3.78402 3.80502 3.90690 4.35346 4.67510 4.83616 5.09557 5.17071 5.22081 5.57655 5.62789 5.69458 5.72637 5.89095 5.98286 6.19366 6.21950 6.35192 6.52939 6.68002 6.76398 6.92557 6.99492 7.27724 7.35937 7.56824 7.75490 7.86344 7.97530 8.00613 8.34664 8.54755 8.60301 9.96853 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.018456 B = 0.004756 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.742159 B = 5885.401580 C = 6884.975281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.101 4.101 3 C 0.060 3.940 4 N -0.475 5.475 5 C 0.216 3.784 6 F -0.121 7.121 7 C 0.163 3.837 8 N -0.664 5.664 9 C 0.150 3.850 10 C -0.241 4.241 11 C -0.105 4.105 12 C -0.031 4.031 13 F -0.161 7.161 14 C 0.101 3.899 15 C -0.448 4.448 16 H 0.086 0.914 17 C 0.073 3.927 18 N -0.795 5.795 19 Si 0.918 3.082 20 H -0.258 1.258 21 H -0.272 1.272 22 H -0.271 1.271 23 C -0.158 4.158 24 C -0.130 4.130 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.158 0.842 29 H 0.411 0.589 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.284 0.716 33 H 0.134 0.866 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.592 8.521 -0.539 10.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.104 4.104 3 C -0.099 4.099 4 N -0.187 5.187 5 C 0.057 3.943 6 F -0.101 7.101 7 C 0.055 3.945 8 N -0.284 5.284 9 C 0.057 3.943 10 C -0.263 4.263 11 C -0.125 4.125 12 C -0.052 4.052 13 F -0.140 7.140 14 C 0.097 3.903 15 C -0.477 4.477 16 H 0.104 0.896 17 C -0.145 4.145 18 N -0.420 5.420 19 Si 0.742 3.258 20 H -0.182 1.182 21 H -0.197 1.197 22 H -0.196 1.196 23 C -0.180 4.180 24 C -0.159 4.159 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.175 0.825 29 H 0.248 0.752 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.095 0.905 33 H 0.151 0.849 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.911 9.165 -0.538 10.412 hybrid contribution 0.626 -1.466 0.434 1.652 sum -4.285 7.699 -0.104 8.812 Atomic orbital electron populations 1.20709 0.89944 1.03196 1.02687 1.20749 0.97595 0.93103 0.98965 1.21997 0.87349 0.97673 1.02925 1.66776 1.09670 1.29435 1.12860 1.17527 0.78572 0.88496 1.09752 1.91551 1.27332 1.96808 1.94378 1.18621 0.92534 0.86061 0.97273 1.42134 1.09023 1.01681 1.75563 1.17553 0.96138 0.83997 0.96654 1.20096 1.04401 0.97357 1.04416 1.20331 1.00410 0.92101 0.99615 1.17926 1.02558 0.81191 1.03512 1.91286 1.81775 1.45864 1.95087 1.17423 0.89592 0.93170 0.90094 1.19582 0.95664 1.05691 1.26763 0.89637 1.25935 0.95997 0.96998 0.95558 1.69763 1.02980 1.33775 1.35478 0.86088 0.79506 0.80361 0.79883 1.18189 1.19693 1.19559 1.21081 1.05157 0.90402 1.01333 1.21500 0.91075 1.00117 1.03256 0.90738 0.90986 0.91170 0.82476 0.75228 0.87734 0.87513 0.90537 0.84851 0.82261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.03 36.01 0.36 -0.63 16 2 C -0.10 -1.30 5.89 -104.51 -0.62 -1.91 16 3 C 0.06 0.79 10.85 -17.53 -0.19 0.60 16 4 N -0.47 -7.68 10.37 -13.43 -0.14 -7.82 16 5 C 0.22 3.68 8.43 -17.15 -0.14 3.54 16 6 F -0.12 -2.09 16.70 2.25 0.04 -2.05 16 7 C 0.16 2.79 6.45 -83.49 -0.54 2.26 16 8 N -0.66 -12.22 5.48 -8.28 -0.05 -12.26 16 9 C 0.15 3.12 5.88 -83.80 -0.49 2.63 16 10 C -0.24 -4.79 7.40 -39.10 -0.29 -5.08 16 11 C -0.10 -2.17 10.00 -39.62 -0.40 -2.57 16 12 C -0.03 -0.74 7.31 -38.61 -0.28 -1.03 16 13 F -0.16 -3.84 16.76 2.25 0.04 -3.80 16 14 C 0.10 2.54 5.55 -106.78 -0.59 1.95 16 15 C -0.45 -11.35 8.75 -37.79 -0.33 -11.68 16 16 H 0.09 2.15 7.77 -52.49 -0.41 1.74 16 17 C 0.07 1.73 5.28 -17.34 -0.09 1.64 16 18 N -0.79 -19.18 10.81 55.55 0.60 -18.58 16 19 Si 0.92 17.90 29.57 -169.99 -5.03 12.88 16 20 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 21 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 22 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 23 C -0.16 -3.71 8.57 -38.70 -0.33 -4.05 16 24 C -0.13 -2.01 7.82 -39.10 -0.31 -2.31 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 27 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 28 H 0.16 1.53 8.06 -52.48 -0.42 1.10 16 29 H 0.41 7.23 8.36 -40.82 -0.34 6.89 16 30 H 0.10 1.89 6.64 -52.48 -0.35 1.54 16 31 H 0.11 1.93 8.06 -52.49 -0.42 1.51 16 32 H 0.28 6.22 8.30 -40.82 -0.34 5.88 16 33 H 0.13 3.26 6.21 -52.49 -0.33 2.93 16 34 H 0.16 2.56 5.49 -52.49 -0.29 2.27 16 LS Contribution 302.44 15.07 4.56 4.56 Total: -1.00 -26.41 302.44 -7.17 -33.59 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -2.96 Total: 10.14 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -4.24 Total: -16.65 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.42 Total: -38.66 kcal Atomic # 9 Polarization: -5.93 SS G_CDS: 0.08 Total: -5.86 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -26.41 -7.17 -33.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211510106.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.469 kcal (2) G-P(sol) polarization free energy of solvation -26.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds