Wall clock time and date at job start Tue Mar 31 2020 07:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38155 * 120.35148 * 2 1 4 4 N 1.31955 * 120.95485 * 179.97438 * 3 2 1 5 5 C 1.31935 * 121.76317 * 0.02562 * 4 3 2 6 6 F 1.35105 * 119.69874 * 179.97438 * 5 4 3 7 7 C 1.39209 * 120.60636 * 0.02562 * 5 4 3 8 8 N 1.39867 * 120.50777 * 179.97438 * 7 5 4 9 9 C 1.39785 * 120.00424 * 187.89478 * 8 7 5 10 10 C 1.39433 * 119.91775 * 41.70851 * 9 8 7 11 11 C 1.38349 * 120.46643 * 179.97438 * 10 9 8 12 12 C 1.38021 * 120.29081 * 0.04115 * 11 10 9 13 13 F 1.35100 * 120.08736 * 179.97438 * 12 11 10 14 14 C 1.41020 * 119.82054 * 359.97438 * 12 11 10 15 15 C 1.41294 * 120.22280 * 179.72396 * 14 12 11 16 16 H 1.08002 * 120.00107 * 330.68202 * 15 14 12 17 17 C 1.39915 * 119.99995 * 150.67280 * 15 14 12 18 18 N 1.30856 * 119.99895 * 350.77503 * 17 15 14 19 19 Si 1.86795 * 120.00094 * 170.77405 * 17 15 14 20 20 H 1.48506 * 109.47234 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47474 * 120.00246 * 19 17 15 22 22 H 1.48504 * 109.47264 * 240.00525 * 19 17 15 23 23 C 1.38197 * 119.91589 * 221.72909 * 9 8 7 24 24 C 1.38626 * 120.35323 * 180.30315 * 2 1 3 25 25 H 1.09004 * 109.46797 * 90.00076 * 1 2 3 26 26 H 1.09003 * 109.47033 * 209.99755 * 1 2 3 27 27 H 1.08997 * 109.47204 * 329.99759 * 1 2 3 28 28 H 1.08009 * 119.52470 * 0.02562 * 3 2 1 29 29 H 0.97008 * 119.99272 * 7.89508 * 8 7 5 30 30 H 1.08003 * 119.76848 * 0.02562 * 10 9 8 31 31 H 1.08002 * 119.85840 * 180.02562 * 11 10 9 32 32 H 0.97010 * 120.00189 * 179.97438 * 18 17 15 33 33 H 1.07998 * 120.14424 * 0.02562 * 23 9 8 34 34 H 1.07994 * 120.80527 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2051 1.1922 0.0000 4 7 3.5246 1.2061 0.0005 5 6 4.2309 0.0917 0.0005 6 9 5.5805 0.1546 0.0005 7 6 3.5983 -1.1483 -0.0005 8 7 4.3491 -2.3284 -0.0010 9 6 3.7127 -3.5617 -0.1684 10 6 2.6932 -3.6961 -1.1100 11 6 2.0560 -4.9116 -1.2853 12 6 2.4230 -6.0056 -0.5281 13 9 1.7977 -7.1904 -0.7024 14 6 3.4524 -5.8833 0.4280 15 6 3.8309 -6.9962 1.2118 16 1 3.1054 -7.7593 1.4522 17 6 5.1458 -7.1099 1.6765 18 7 6.0669 -6.2888 1.2410 19 14 5.5863 -8.4337 2.9186 20 1 4.3745 -9.2265 3.2479 21 1 6.6212 -9.3290 2.3419 22 1 6.1133 -7.7985 4.1532 23 6 4.0954 -4.6446 0.6002 24 6 2.2075 -1.1962 -0.0063 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6631 2.1264 0.0004 29 1 5.3115 -2.2909 0.1147 30 1 2.3993 -2.8456 -1.7072 31 1 1.2678 -5.0047 -2.0178 32 1 6.9784 -6.3673 1.5634 33 1 4.8846 -4.5400 1.3300 34 1 1.6866 -2.1422 -0.0117 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211510106.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:42 Heat of formation + Delta-G solvation = -50.659491 kcal Electronic energy + Delta-G solvation = -22073.541493 eV Core-core repulsion = 18413.153729 eV Total energy + Delta-G solvation = -3660.387764 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.95751 -49.19412 -41.41252 -39.68033 -36.97262 -35.37560 -34.40650 -31.85822 -31.68402 -29.10461 -27.90531 -27.32879 -24.72534 -23.65656 -22.81074 -22.03056 -19.44771 -19.21206 -18.90025 -17.99476 -17.50370 -17.36394 -17.10428 -16.53730 -16.22566 -15.98270 -15.50927 -14.96175 -14.81901 -14.59835 -14.49928 -14.31131 -14.00161 -13.73230 -13.43742 -13.37323 -13.24390 -12.94104 -12.79839 -12.77019 -12.55682 -12.06690 -11.94200 -11.49337 -11.19994 -10.74260 -10.22972 -9.56767 -9.50220 -8.77231 -8.24431 -6.52144 -0.05057 0.15067 0.76599 0.85127 1.36200 1.43757 1.50758 2.15585 2.16555 2.54915 2.66087 2.68844 3.40016 3.53402 3.76191 3.99149 4.06455 4.14390 4.27426 4.54478 4.55598 4.76130 4.91385 4.92889 4.96373 4.97931 5.11644 5.22740 5.27965 5.33443 5.55530 5.61005 5.73856 5.89329 5.95312 6.23116 6.49781 6.57595 6.71655 6.73658 6.81520 8.23208 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.018456 B = 0.004756 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.742159 B = 5885.401580 C = 6884.975281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.087 4.087 3 C 0.072 3.928 4 N -0.492 5.492 5 C 0.197 3.803 6 F -0.130 7.130 7 C 0.145 3.855 8 N -0.671 5.671 9 C 0.163 3.837 10 C -0.226 4.226 11 C -0.095 4.095 12 C -0.062 4.062 13 F -0.168 7.168 14 C 0.075 3.925 15 C -0.488 4.488 16 H 0.074 0.926 17 C 0.037 3.963 18 N -0.822 5.822 19 Si 0.985 3.015 20 H -0.260 1.260 21 H -0.265 1.265 22 H -0.261 1.261 23 C -0.178 4.178 24 C -0.138 4.138 25 H 0.092 0.908 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.200 0.800 29 H 0.411 0.589 30 H 0.131 0.869 31 H 0.139 0.861 32 H 0.291 0.709 33 H 0.117 0.883 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.319 10.429 -0.896 12.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.089 4.089 3 C -0.088 4.088 4 N -0.205 5.205 5 C 0.040 3.960 6 F -0.110 7.110 7 C 0.039 3.961 8 N -0.292 5.292 9 C 0.069 3.931 10 C -0.247 4.247 11 C -0.114 4.114 12 C -0.083 4.083 13 F -0.147 7.147 14 C 0.071 3.929 15 C -0.517 4.517 16 H 0.092 0.908 17 C -0.178 4.178 18 N -0.448 5.448 19 Si 0.806 3.194 20 H -0.184 1.184 21 H -0.189 1.189 22 H -0.186 1.186 23 C -0.200 4.200 24 C -0.167 4.167 25 H 0.111 0.889 26 H 0.090 0.910 27 H 0.116 0.884 28 H 0.216 0.784 29 H 0.247 0.753 30 H 0.149 0.851 31 H 0.157 0.843 32 H 0.102 0.898 33 H 0.135 0.865 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.643 11.117 -0.906 12.982 hybrid contribution 1.004 -1.791 0.466 2.105 sum -5.639 9.326 -0.440 10.907 Atomic orbital electron populations 1.20843 0.86801 1.04608 1.04202 1.21168 0.99646 0.91810 0.96303 1.22798 0.86458 0.99504 1.00019 1.66874 1.11138 1.28986 1.13517 1.17633 0.78494 0.88868 1.11018 1.91520 1.28004 1.96866 1.94568 1.18748 0.93176 0.85383 0.98840 1.42013 1.09097 1.01418 1.76658 1.17575 0.95689 0.84261 0.95594 1.20369 1.03176 0.97772 1.03384 1.20648 1.00560 0.91155 0.99047 1.18215 1.03328 0.82003 1.04731 1.91252 1.81860 1.46417 1.95196 1.17739 0.90578 0.93745 0.90804 1.19724 0.96602 1.06305 1.29097 0.90795 1.26695 0.95306 0.99015 0.96816 1.69808 1.03454 1.35123 1.36440 0.85095 0.79035 0.77651 0.77644 1.18393 1.18933 1.18551 1.20961 1.05591 0.91138 1.02300 1.21629 0.90439 1.01114 1.03544 0.88934 0.91009 0.88444 0.78356 0.75267 0.85143 0.84301 0.89839 0.86549 0.82879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 10.03 71.24 0.71 -0.74 16 2 C -0.09 -1.89 5.89 -19.79 -0.12 -2.01 16 3 C 0.07 1.61 10.85 84.65 0.92 2.52 16 4 N -0.49 -14.83 10.37 -196.40 -2.04 -16.86 16 5 C 0.20 6.58 8.43 84.91 0.72 7.30 16 6 F -0.13 -4.51 16.70 44.97 0.75 -3.76 16 7 C 0.14 4.82 6.45 38.31 0.25 5.07 16 8 N -0.67 -24.88 5.48 -180.11 -0.99 -25.86 16 9 C 0.16 6.85 5.88 38.15 0.22 7.07 16 10 C -0.23 -8.64 7.40 22.58 0.17 -8.48 16 11 C -0.09 -3.81 10.00 22.24 0.22 -3.59 16 12 C -0.06 -3.01 7.31 22.90 0.17 -2.84 16 13 F -0.17 -8.20 16.76 44.97 0.75 -7.45 16 14 C 0.08 3.92 5.55 -21.26 -0.12 3.80 16 15 C -0.49 -25.95 8.75 23.43 0.20 -25.74 16 16 H 0.07 3.93 7.77 -2.91 -0.02 3.91 16 17 C 0.04 1.80 5.28 85.24 0.45 2.25 16 18 N -0.82 -41.17 10.81 21.82 0.24 -40.94 16 19 Si 0.99 37.57 29.57 68.60 2.03 39.60 16 20 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 21 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 22 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 23 C -0.18 -8.68 8.57 22.84 0.20 -8.49 16 24 C -0.14 -3.97 7.82 22.58 0.18 -3.79 16 25 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.07 1.03 8.10 -2.39 -0.02 1.01 16 27 H 0.10 0.85 8.09 -2.39 -0.02 0.83 16 28 H 0.20 2.72 8.06 -2.91 -0.02 2.70 16 29 H 0.41 14.95 8.36 -92.70 -0.78 14.18 16 30 H 0.13 4.34 6.64 -2.91 -0.02 4.32 16 31 H 0.14 4.64 8.06 -2.91 -0.02 4.61 16 32 H 0.29 13.13 8.30 -92.70 -0.77 12.36 16 33 H 0.12 6.01 6.21 -2.91 -0.02 5.99 16 34 H 0.15 4.61 5.49 -2.91 -0.02 4.59 16 Total: -1.00 -59.66 302.44 5.31 -54.34 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 0.40 Total: 28.59 kcal Atomic # 6 Polarization: -31.83 SS G_CDS: 4.17 Total: -27.66 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: -2.79 Total: -83.66 kcal Atomic # 9 Polarization: -12.71 SS G_CDS: 1.50 Total: -11.21 kcal Atomic # 14 Polarization: 37.57 SS G_CDS: 2.03 Total: 39.60 kcal Total: -59.66 5.31 -54.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211510106.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.684 kcal (2) G-P(sol) polarization free energy of solvation -59.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds