Wall clock time and date at job start Tue Mar 31 2020 06:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86797 * 120.00303 * 2 1 4 4 H 1.48502 * 109.47065 * 272.27679 * 3 2 1 5 5 H 1.48496 * 109.47284 * 32.28057 * 3 2 1 6 6 H 1.48507 * 109.47138 * 152.27997 * 3 2 1 7 7 C 1.39922 * 119.99890 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99117 * 345.18355 * 7 2 1 9 9 C 1.41280 * 120.00131 * 165.18645 * 7 2 1 10 10 C 1.40624 * 120.22970 * 330.12828 * 9 7 2 11 11 C 1.38188 * 119.71037 * 180.27291 * 10 9 7 12 12 N 1.39798 * 119.91834 * 179.97438 * 11 10 9 13 13 C 1.39837 * 120.00332 * 221.39678 * 12 11 10 14 14 C 1.38771 * 120.04356 * 7.67530 * 13 12 11 15 15 C 1.38769 * 119.87594 * 179.81663 * 14 13 12 16 16 N 1.39804 * 120.01530 * 180.18834 * 15 14 13 17 17 C 1.38928 * 119.96421 * 0.43316 * 15 14 13 18 18 C 1.38218 * 120.09029 * 359.79266 * 17 15 14 19 19 C 1.38286 * 120.12163 * 0.02562 * 18 17 15 20 20 F 1.35098 * 119.98329 * 179.97438 * 19 18 17 21 21 C 1.39432 * 120.16873 * 0.02562 * 11 10 9 22 22 C 1.38359 * 120.45690 * 359.97438 * 21 11 10 23 23 C 1.38007 * 120.29554 * 0.02562 * 22 21 11 24 24 F 1.35110 * 120.08901 * 179.97438 * 23 22 21 25 25 H 0.97009 * 119.99729 * 359.97438 * 1 2 3 26 26 H 1.08007 * 120.14432 * 0.25633 * 10 9 7 27 27 H 0.97002 * 119.99680 * 41.40159 * 12 11 10 28 28 H 1.07999 * 120.06102 * 359.97438 * 14 13 12 29 29 H 0.97009 * 119.99678 * 180.24921 * 16 15 14 30 30 H 0.96999 * 120.00688 * 0.24663 * 16 15 14 31 31 H 1.07995 * 119.95414 * 179.77329 * 17 15 14 32 32 H 1.07993 * 119.93811 * 179.97438 * 18 17 15 33 33 H 1.07993 * 119.77084 * 180.02562 * 21 11 10 34 34 H 1.08010 * 119.84699 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4420 2.0741 -1.3990 5 1 1.4651 2.6382 0.7477 6 1 3.5635 1.4266 0.6513 7 6 2.0081 -1.2118 -0.0005 8 1 1.4949 -2.1316 0.2383 9 6 3.3857 -1.2320 -0.3134 10 6 3.9269 -0.2744 -1.1894 11 6 5.2748 -0.3076 -1.4924 12 7 5.8173 0.6420 -2.3632 13 6 6.7567 0.2539 -3.3237 14 6 7.0332 -1.0915 -3.5212 15 6 7.9632 -1.4729 -4.4780 16 7 8.2411 -2.8277 -4.6821 17 6 8.6216 -0.5074 -5.2292 18 6 8.3485 0.8325 -5.0280 19 6 7.4197 1.2165 -4.0782 20 9 7.1553 2.5270 -3.8835 21 6 6.0949 -1.2865 -0.9326 22 6 5.5697 -2.2321 -0.0699 23 6 4.2263 -2.2166 0.2458 24 9 3.7178 -3.1423 1.0884 25 1 -0.4850 0.8401 0.0004 26 1 3.2919 0.4836 -1.6238 27 1 5.5422 1.5701 -2.3011 28 1 6.5236 -1.8405 -2.9332 29 1 8.8939 -3.0939 -5.3485 30 1 7.7812 -3.5017 -4.1575 31 1 9.3480 -0.8042 -5.9712 32 1 8.8621 1.5810 -5.6131 33 1 7.1474 -1.3062 -1.1735 34 1 6.2139 -2.9862 0.3578 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211841655.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:02 Heat of formation + Delta-G solvation = -42.925899 kcal Electronic energy + Delta-G solvation = -22195.832692 eV Core-core repulsion = 18535.780283 eV Total energy + Delta-G solvation = -3660.052410 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 7.07 seconds Orbital eigenvalues (eV) -48.42270 -47.42048 -39.60390 -37.96310 -35.49112 -33.91798 -33.32350 -30.79120 -29.94417 -28.46011 -26.98876 -25.41321 -22.89684 -22.20074 -21.49904 -20.32059 -17.96781 -17.72036 -17.09381 -16.88820 -16.50002 -16.03282 -15.32470 -15.21741 -15.09420 -14.59482 -14.42655 -14.23436 -13.62507 -13.51452 -13.03745 -12.85163 -12.66594 -12.55536 -12.31591 -12.12560 -11.91009 -11.49721 -11.16763 -10.91558 -10.90878 -10.38619 -10.12404 -9.86423 -9.78221 -9.29359 -8.17687 -7.94020 -7.43987 -7.12595 -6.76745 -4.67975 1.51418 1.61414 2.34046 2.36982 2.96613 3.09039 3.17654 3.58292 3.81982 3.92502 3.95032 4.26338 4.63617 4.92613 5.09044 5.30891 5.56036 5.61720 5.67895 5.80109 5.83939 6.11834 6.30558 6.34030 6.35071 6.47473 6.53236 6.74623 6.82382 6.98369 7.17091 7.25942 7.42398 7.49359 7.63467 7.78295 7.94261 7.98755 8.17864 8.40964 8.55522 9.88846 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.017643 B = 0.005513 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.612177 B = 5077.976104 C = 6235.787100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.083 3.917 3 Si 0.914 3.086 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.242 1.242 7 C -0.429 4.429 8 H 0.098 0.902 9 C 0.084 3.916 10 C -0.249 4.249 11 C 0.189 3.811 12 N -0.678 5.678 13 C 0.233 3.767 14 C -0.242 4.242 15 C 0.246 3.754 16 N -0.876 5.876 17 C -0.230 4.230 18 C -0.065 4.065 19 C -0.039 4.039 20 F -0.152 7.152 21 C -0.248 4.248 22 C -0.093 4.093 23 C -0.023 4.023 24 F -0.157 7.157 25 H 0.289 0.711 26 H 0.112 0.888 27 H 0.407 0.593 28 H 0.149 0.851 29 H 0.396 0.604 30 H 0.400 0.600 31 H 0.121 0.879 32 H 0.129 0.871 33 H 0.113 0.887 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.502 -0.002 -8.098 15.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.137 4.137 3 Si 0.740 3.260 4 H -0.195 1.195 5 H -0.215 1.215 6 H -0.166 1.166 7 C -0.457 4.457 8 H 0.116 0.884 9 C 0.080 3.920 10 C -0.270 4.270 11 C 0.095 3.905 12 N -0.298 5.298 13 C 0.128 3.872 14 C -0.269 4.269 15 C 0.140 3.860 16 N -0.414 5.414 17 C -0.254 4.254 18 C -0.085 4.085 19 C -0.063 4.063 20 F -0.131 7.131 21 C -0.269 4.269 22 C -0.112 4.112 23 C -0.044 4.044 24 F -0.136 7.136 25 H 0.100 0.900 26 H 0.130 0.870 27 H 0.243 0.757 28 H 0.167 0.833 29 H 0.224 0.776 30 H 0.228 0.772 31 H 0.139 0.861 32 H 0.147 0.853 33 H 0.131 0.869 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 13.112 0.031 -7.950 15.334 hybrid contribution -0.029 0.867 0.076 0.871 sum 13.083 0.898 -7.873 15.296 Atomic orbital electron populations 1.69664 1.08070 1.30689 1.33444 1.26198 0.94876 1.01793 0.90877 0.86288 0.81182 0.79416 0.79083 1.19450 1.21526 1.16564 1.19463 0.91553 0.96308 1.38370 0.88390 1.17469 0.93398 0.90569 0.90610 1.20684 0.92825 1.06144 1.07382 1.17369 0.91439 0.90806 0.90933 1.42156 1.43511 1.10455 1.33686 1.17523 0.88938 0.92448 0.88288 1.20470 1.06245 0.94599 1.05635 1.17500 0.91984 0.84595 0.91914 1.42469 1.49155 1.03857 1.45951 1.20132 1.07513 0.91438 1.06337 1.20525 0.95735 0.96380 0.95902 1.16927 1.06234 0.77066 1.06119 1.91390 1.93765 1.32862 1.95108 1.20123 0.98339 1.01611 1.06851 1.20425 0.93266 0.99051 0.98499 1.17724 0.91620 0.95403 0.99629 1.91315 1.88101 1.64541 1.69601 0.90008 0.87005 0.75727 0.83307 0.77600 0.77183 0.86063 0.85282 0.86942 0.87141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.66 13.93 55.55 0.77 -19.88 16 2 C 0.08 2.13 5.45 -17.34 -0.09 2.03 16 3 Si 0.91 20.16 24.43 -169.99 -4.15 16.01 16 4 H -0.27 -5.69 6.60 56.52 0.37 -5.32 16 5 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.24 -5.45 6.81 56.52 0.38 -5.07 16 7 C -0.43 -11.46 9.28 -37.80 -0.35 -11.81 16 8 H 0.10 2.79 7.97 -52.48 -0.42 2.37 16 9 C 0.08 2.09 5.14 -106.79 -0.55 1.54 16 10 C -0.25 -5.72 7.02 -38.70 -0.27 -5.99 16 11 C 0.19 3.88 5.87 -83.80 -0.49 3.39 16 12 N -0.68 -12.44 5.47 -8.40 -0.05 -12.49 16 13 C 0.23 3.91 6.43 -83.68 -0.54 3.37 16 14 C -0.24 -3.75 7.86 -39.19 -0.31 -4.06 16 15 C 0.25 3.14 6.75 -83.77 -0.57 2.57 16 16 N -0.88 -8.21 9.09 32.41 0.29 -7.92 16 17 C -0.23 -2.71 9.89 -39.33 -0.39 -3.10 16 18 C -0.07 -0.84 10.01 -39.57 -0.40 -1.23 16 19 C -0.04 -0.60 7.31 -39.24 -0.29 -0.89 16 20 F -0.15 -2.44 16.65 2.25 0.04 -2.40 16 21 C -0.25 -4.81 7.37 -39.09 -0.29 -5.09 16 22 C -0.09 -1.87 10.00 -39.62 -0.40 -2.26 16 23 C -0.02 -0.54 7.31 -38.61 -0.28 -0.83 16 24 F -0.16 -3.73 16.76 2.25 0.04 -3.69 16 25 H 0.29 6.76 8.30 -40.82 -0.34 6.42 16 26 H 0.11 2.58 4.38 -52.48 -0.23 2.35 16 27 H 0.41 7.11 8.34 -40.82 -0.34 6.77 16 28 H 0.15 2.45 5.34 -52.49 -0.28 2.17 16 29 H 0.40 2.71 8.84 -40.82 -0.36 2.34 16 30 H 0.40 3.47 8.84 -40.82 -0.36 3.11 16 31 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 32 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 33 H 0.11 1.98 6.61 -52.49 -0.35 1.64 16 34 H 0.11 1.91 8.06 -52.48 -0.42 1.49 16 LS Contribution 295.31 15.07 4.45 4.45 Total: -1.00 -27.56 295.31 -6.60 -34.16 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -2.79 Total: 14.14 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -5.21 Total: -22.38 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 1.02 Total: -40.29 kcal Atomic # 9 Polarization: -6.17 SS G_CDS: 0.08 Total: -6.09 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.15 Total: 16.01 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.56 -6.60 -34.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211841655.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.769 kcal (2) G-P(sol) polarization free energy of solvation -27.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.07 seconds