Wall clock time and date at job start Tue Mar 31 2020 06:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86797 * 120.00303 * 2 1 4 4 H 1.48502 * 109.47065 * 272.27679 * 3 2 1 5 5 H 1.48496 * 109.47284 * 32.28057 * 3 2 1 6 6 H 1.48507 * 109.47138 * 152.27997 * 3 2 1 7 7 C 1.39922 * 119.99890 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99117 * 345.18355 * 7 2 1 9 9 C 1.41280 * 120.00131 * 165.18645 * 7 2 1 10 10 C 1.40624 * 120.22970 * 330.12828 * 9 7 2 11 11 C 1.38188 * 119.71037 * 180.27291 * 10 9 7 12 12 N 1.39798 * 119.91834 * 179.97438 * 11 10 9 13 13 C 1.39837 * 120.00332 * 221.39678 * 12 11 10 14 14 C 1.38771 * 120.04356 * 7.67530 * 13 12 11 15 15 C 1.38769 * 119.87594 * 179.81663 * 14 13 12 16 16 N 1.39804 * 120.01530 * 180.18834 * 15 14 13 17 17 C 1.38928 * 119.96421 * 0.43316 * 15 14 13 18 18 C 1.38218 * 120.09029 * 359.79266 * 17 15 14 19 19 C 1.38286 * 120.12163 * 0.02562 * 18 17 15 20 20 F 1.35098 * 119.98329 * 179.97438 * 19 18 17 21 21 C 1.39432 * 120.16873 * 0.02562 * 11 10 9 22 22 C 1.38359 * 120.45690 * 359.97438 * 21 11 10 23 23 C 1.38007 * 120.29554 * 0.02562 * 22 21 11 24 24 F 1.35110 * 120.08901 * 179.97438 * 23 22 21 25 25 H 0.97009 * 119.99729 * 359.97438 * 1 2 3 26 26 H 1.08007 * 120.14432 * 0.25633 * 10 9 7 27 27 H 0.97002 * 119.99680 * 41.40159 * 12 11 10 28 28 H 1.07999 * 120.06102 * 359.97438 * 14 13 12 29 29 H 0.97009 * 119.99678 * 180.24921 * 16 15 14 30 30 H 0.96999 * 120.00688 * 0.24663 * 16 15 14 31 31 H 1.07995 * 119.95414 * 179.77329 * 17 15 14 32 32 H 1.07993 * 119.93811 * 179.97438 * 18 17 15 33 33 H 1.07993 * 119.77084 * 180.02562 * 21 11 10 34 34 H 1.08010 * 119.84699 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4420 2.0741 -1.3990 5 1 1.4651 2.6382 0.7477 6 1 3.5635 1.4266 0.6513 7 6 2.0081 -1.2118 -0.0005 8 1 1.4949 -2.1316 0.2383 9 6 3.3857 -1.2320 -0.3134 10 6 3.9269 -0.2744 -1.1894 11 6 5.2748 -0.3076 -1.4924 12 7 5.8173 0.6420 -2.3632 13 6 6.7567 0.2539 -3.3237 14 6 7.0332 -1.0915 -3.5212 15 6 7.9632 -1.4729 -4.4780 16 7 8.2411 -2.8277 -4.6821 17 6 8.6216 -0.5074 -5.2292 18 6 8.3485 0.8325 -5.0280 19 6 7.4197 1.2165 -4.0782 20 9 7.1553 2.5270 -3.8835 21 6 6.0949 -1.2865 -0.9326 22 6 5.5697 -2.2321 -0.0699 23 6 4.2263 -2.2166 0.2458 24 9 3.7178 -3.1423 1.0884 25 1 -0.4850 0.8401 0.0004 26 1 3.2919 0.4836 -1.6238 27 1 5.5422 1.5701 -2.3011 28 1 6.5236 -1.8405 -2.9332 29 1 8.8939 -3.0939 -5.3485 30 1 7.7812 -3.5017 -4.1575 31 1 9.3480 -0.8042 -5.9712 32 1 8.8621 1.5810 -5.6131 33 1 7.1474 -1.3062 -1.1735 34 1 6.2139 -2.9862 0.3578 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211841655.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:01 Heat of formation + Delta-G solvation = -60.206214 kcal Electronic energy + Delta-G solvation = -22196.582023 eV Core-core repulsion = 18535.780283 eV Total energy + Delta-G solvation = -3660.801741 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -49.58027 -49.26613 -40.90381 -39.39762 -36.90628 -35.52039 -34.54193 -32.56498 -31.27330 -29.69377 -28.26042 -27.23676 -24.24951 -23.66240 -22.74547 -21.92028 -19.61758 -19.00960 -18.43365 -18.27204 -17.89251 -17.40704 -16.77596 -16.57246 -16.43111 -16.15423 -16.07050 -15.49920 -15.31989 -14.79315 -14.66797 -14.28668 -13.95864 -13.84758 -13.67069 -13.57948 -13.44175 -13.16082 -12.83079 -12.64871 -12.12705 -11.95298 -11.79494 -11.66113 -11.11329 -10.81018 -9.73125 -9.62414 -9.01382 -8.57737 -8.09306 -6.64275 0.26868 0.50787 0.59329 0.82372 1.18046 1.32624 1.40932 2.01941 2.24672 2.43204 2.87685 3.07183 3.23092 3.53829 3.86355 3.94443 4.09186 4.35413 4.43076 4.45260 4.59467 4.64684 4.77326 4.84218 5.04840 5.19796 5.31046 5.36766 5.45033 5.48895 5.55250 5.60958 5.81131 5.95595 6.08539 6.36461 6.52148 6.61274 6.64340 6.69082 7.08610 8.06856 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.017643 B = 0.005513 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.612177 B = 5077.976104 C = 6235.787100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.049 3.951 3 Si 0.966 3.034 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.250 1.250 7 C -0.473 4.473 8 H 0.057 0.943 9 C 0.070 3.930 10 C -0.258 4.258 11 C 0.197 3.803 12 N -0.684 5.684 13 C 0.208 3.792 14 C -0.260 4.260 15 C 0.251 3.749 16 N -0.861 5.861 17 C -0.217 4.217 18 C -0.059 4.059 19 C -0.059 4.059 20 F -0.160 7.160 21 C -0.221 4.221 22 C -0.079 4.079 23 C -0.053 4.053 24 F -0.166 7.166 25 H 0.298 0.702 26 H 0.108 0.892 27 H 0.408 0.592 28 H 0.136 0.864 29 H 0.412 0.588 30 H 0.405 0.595 31 H 0.157 0.843 32 H 0.157 0.843 33 H 0.141 0.859 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.701 0.332 -10.178 20.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.167 4.167 3 Si 0.789 3.211 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.174 1.174 7 C -0.502 4.502 8 H 0.075 0.925 9 C 0.066 3.934 10 C -0.280 4.280 11 C 0.102 3.898 12 N -0.306 5.306 13 C 0.105 3.895 14 C -0.287 4.287 15 C 0.143 3.857 16 N -0.400 5.400 17 C -0.241 4.241 18 C -0.079 4.079 19 C -0.083 4.083 20 F -0.140 7.140 21 C -0.242 4.242 22 C -0.098 4.098 23 C -0.073 4.073 24 F -0.145 7.145 25 H 0.108 0.892 26 H 0.125 0.875 27 H 0.244 0.756 28 H 0.154 0.846 29 H 0.243 0.757 30 H 0.234 0.766 31 H 0.175 0.825 32 H 0.174 0.826 33 H 0.159 0.841 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 17.354 0.328 -10.077 20.071 hybrid contribution -0.989 0.606 0.525 1.273 sum 16.366 0.933 -9.552 18.973 Atomic orbital electron populations 1.69691 1.09113 1.31844 1.35784 1.26837 0.95478 1.04118 0.90230 0.85503 0.79640 0.76233 0.79732 1.18060 1.20062 1.17361 1.19354 0.92984 0.95592 1.42282 0.92457 1.17606 0.92903 0.91810 0.91085 1.20711 0.94062 1.05819 1.07378 1.17433 0.90630 0.91160 0.90592 1.42081 1.44330 1.10003 1.34182 1.17747 0.89458 0.93435 0.88834 1.20432 1.07505 0.93780 1.06976 1.17604 0.90979 0.86177 0.90971 1.42479 1.48909 1.02699 1.45878 1.20555 1.06943 0.90693 1.05871 1.20897 0.94530 0.97628 0.94843 1.17205 1.07350 0.76594 1.07175 1.91366 1.93962 1.33368 1.95280 1.20495 0.99396 0.99862 1.04420 1.20775 0.92040 0.99475 0.97521 1.18074 0.93001 0.95637 1.00602 1.91282 1.88469 1.64806 1.69989 0.89161 0.87465 0.75557 0.84614 0.75749 0.76615 0.82517 0.82565 0.84129 0.83521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.04 13.93 21.82 0.30 -45.73 16 2 C 0.05 2.65 5.45 85.25 0.46 3.12 16 3 Si 0.97 42.54 24.43 68.60 1.68 44.22 16 4 H -0.26 -10.56 6.60 99.48 0.66 -9.90 16 5 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 6 H -0.25 -11.16 6.81 99.48 0.68 -10.48 16 7 C -0.47 -27.02 9.28 23.43 0.22 -26.80 16 8 H 0.06 3.59 7.97 -2.91 -0.02 3.57 16 9 C 0.07 3.59 5.14 -21.27 -0.11 3.48 16 10 C -0.26 -11.93 7.02 22.84 0.16 -11.77 16 11 C 0.20 7.86 5.87 38.15 0.22 8.08 16 12 N -0.68 -24.09 5.47 -180.49 -0.99 -25.08 16 13 C 0.21 6.49 6.43 38.20 0.25 6.74 16 14 C -0.26 -7.28 7.86 22.52 0.18 -7.10 16 15 C 0.25 5.33 6.75 38.16 0.26 5.59 16 16 N -0.86 -12.29 9.09 -51.36 -0.47 -12.76 16 17 C -0.22 -4.00 9.89 22.43 0.22 -3.77 16 18 C -0.06 -1.26 10.01 22.28 0.22 -1.04 16 19 C -0.06 -1.66 7.31 22.49 0.16 -1.50 16 20 F -0.16 -4.85 16.65 44.97 0.75 -4.10 16 21 C -0.22 -7.96 7.37 22.59 0.17 -7.79 16 22 C -0.08 -3.00 10.00 22.24 0.22 -2.78 16 23 C -0.05 -2.49 7.31 22.90 0.17 -2.32 16 24 F -0.17 -8.18 16.76 44.97 0.75 -7.42 16 25 H 0.30 14.57 8.30 -92.70 -0.77 13.80 16 26 H 0.11 5.01 4.38 -2.91 -0.01 5.00 16 27 H 0.41 13.85 8.34 -92.71 -0.77 13.08 16 28 H 0.14 4.09 5.34 -2.91 -0.02 4.08 16 29 H 0.41 3.54 8.84 -92.70 -0.82 2.72 16 30 H 0.40 5.45 8.84 -92.71 -0.82 4.63 16 31 H 0.16 1.82 8.06 -2.91 -0.02 1.79 16 32 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 33 H 0.14 4.38 6.61 -2.91 -0.02 4.36 16 34 H 0.15 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -63.34 295.31 3.55 -59.79 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: -1.28 Total: 28.97 kcal Atomic # 6 Polarization: -40.68 SS G_CDS: 2.80 Total: -37.88 kcal Atomic # 7 Polarization: -82.42 SS G_CDS: -1.15 Total: -83.57 kcal Atomic # 9 Polarization: -13.03 SS G_CDS: 1.50 Total: -11.52 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 1.68 Total: 44.22 kcal Total: -63.34 3.55 -59.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211841655.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.418 kcal (2) G-P(sol) polarization free energy of solvation -63.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds