Wall clock time and date at job start Tue Mar 31 2020 06:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30856 * 1 3 3 Si 1.86801 * 120.00071 * 2 1 4 4 H 1.48499 * 109.47051 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46843 * 300.00026 * 3 2 1 6 6 H 1.48495 * 109.46972 * 59.99902 * 3 2 1 7 7 C 1.39925 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99362 * 199.36926 * 7 2 1 9 9 C 1.41284 * 119.99786 * 19.36372 * 7 2 1 10 10 C 1.40626 * 120.22987 * 24.34087 * 9 7 2 11 11 C 1.38190 * 119.70876 * 179.97438 * 10 9 7 12 12 N 1.39800 * 119.91730 * 179.97438 * 11 10 9 13 13 C 1.39823 * 119.99878 * 215.98918 * 12 11 10 14 14 C 1.38931 * 120.02430 * 28.28020 * 13 12 11 15 15 C 1.38198 * 120.08518 * 180.02562 * 14 13 12 16 16 C 1.38288 * 120.12237 * 0.02562 * 15 14 13 17 17 F 1.35103 * 119.98074 * 180.02562 * 16 15 14 18 18 C 1.39101 * 120.04175 * 359.97438 * 16 15 14 19 19 N 1.39838 * 120.04329 * 179.97438 * 18 16 15 20 20 C 1.38735 * 119.91742 * 359.73077 * 18 16 15 21 21 C 1.39434 * 120.16593 * 0.02562 * 11 10 9 22 22 C 1.38353 * 120.46273 * 0.25356 * 21 11 10 23 23 C 1.38022 * 120.29281 * 359.44400 * 22 21 11 24 24 F 1.35093 * 120.08722 * 180.27857 * 23 22 21 25 25 H 0.96994 * 120.00178 * 0.02562 * 1 2 3 26 26 H 1.08004 * 120.14450 * 0.02562 * 10 9 7 27 27 H 0.97000 * 119.99889 * 35.99221 * 12 11 10 28 28 H 1.08005 * 119.95767 * 0.02562 * 14 13 12 29 29 H 1.07998 * 119.93705 * 179.97438 * 15 14 13 30 30 H 0.97001 * 119.99713 * 0.02562 * 19 18 16 31 31 H 0.96999 * 120.00220 * 179.97438 * 19 18 16 32 32 H 1.07995 * 120.06111 * 180.27113 * 20 18 16 33 33 H 1.08005 * 119.76562 * 179.97438 * 21 11 10 34 34 H 1.08000 * 119.85228 * 179.69947 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.7026 1.3463 0.0006 5 1 1.8838 2.3964 -1.2125 6 1 1.8838 2.3964 1.2125 7 6 2.0082 -1.2118 -0.0005 8 1 3.0423 -1.2383 0.3097 9 6 1.3617 -2.4005 -0.4068 10 6 0.2499 -2.3437 -1.2660 11 6 -0.3740 -3.5131 -1.6570 12 7 -1.4799 -3.4617 -2.5106 13 6 -2.5300 -4.3708 -2.3498 14 6 -2.8023 -4.9037 -1.0960 15 6 -3.8396 -5.8027 -0.9357 16 6 -4.6094 -6.1751 -2.0225 17 9 -5.6231 -7.0538 -1.8625 18 6 -4.3413 -5.6447 -3.2802 19 7 -5.1194 -6.0217 -4.3793 20 6 -3.3043 -4.7374 -3.4419 21 6 0.0961 -4.7442 -1.2013 22 6 1.1858 -4.8079 -0.3512 23 6 1.8271 -3.6522 0.0464 24 9 2.8942 -3.7196 0.8721 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1143 -1.3903 -1.6195 27 1 -1.5186 -2.7954 -3.2145 28 1 -2.2025 -4.6150 -0.2455 29 1 -4.0489 -6.2158 0.0399 30 1 -5.8468 -6.6531 -4.2649 31 1 -4.9322 -5.6512 -5.2560 32 1 -3.0969 -4.3209 -4.4165 33 1 -0.3966 -5.6542 -1.5106 34 1 1.5387 -5.7665 -0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212350651.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:00 Heat of formation + Delta-G solvation = -63.512527 kcal Electronic energy + Delta-G solvation = -21772.076068 eV Core-core repulsion = 18111.130955 eV Total energy + Delta-G solvation = -3660.945113 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.59271 -49.12343 -40.75184 -39.17474 -36.75735 -35.45586 -34.65473 -31.70819 -31.22247 -29.46403 -28.23742 -27.23398 -24.02679 -23.26774 -23.13230 -21.72601 -19.40767 -18.88881 -18.27216 -17.94140 -17.91341 -17.40275 -16.65583 -16.49488 -16.40318 -16.06707 -15.88266 -15.67154 -14.83417 -14.66650 -14.43819 -14.19314 -13.98065 -13.64945 -13.52280 -13.45809 -13.31663 -12.89766 -12.75157 -12.24104 -12.17079 -12.03471 -11.87458 -11.47830 -11.15582 -10.73982 -9.53445 -9.48967 -8.75904 -8.59450 -7.95508 -6.43156 0.29304 0.54972 0.88570 0.98653 1.38628 1.47867 1.53896 2.19502 2.43224 2.62494 2.84682 2.98086 3.48483 3.53157 3.93600 4.10348 4.29367 4.36044 4.43967 4.59134 4.68653 4.82929 4.99890 5.07142 5.14848 5.21431 5.30888 5.42327 5.52981 5.68782 5.75295 5.86956 5.99820 6.05696 6.36564 6.48454 6.71418 6.77317 6.83275 6.93605 6.99377 8.23662 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.022515 B = 0.003992 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.314612 B = 7013.076351 C = 7716.705911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.044 3.956 3 Si 0.981 3.019 4 H -0.263 1.263 5 H -0.257 1.257 6 H -0.265 1.265 7 C -0.492 4.492 8 H 0.071 0.929 9 C 0.080 3.920 10 C -0.198 4.198 11 C 0.184 3.816 12 N -0.679 5.679 13 C 0.233 3.767 14 C -0.209 4.209 15 C -0.069 4.069 16 C -0.048 4.048 17 F -0.153 7.153 18 C 0.227 3.773 19 N -0.860 5.860 20 C -0.233 4.233 21 C -0.234 4.234 22 C -0.096 4.096 23 C -0.081 4.081 24 F -0.173 7.173 25 H 0.293 0.707 26 H 0.117 0.883 27 H 0.411 0.589 28 H 0.113 0.887 29 H 0.144 0.856 30 H 0.407 0.593 31 H 0.413 0.587 32 H 0.150 0.850 33 H 0.122 0.878 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.380 -5.882 -8.392 13.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.173 4.173 3 Si 0.801 3.199 4 H -0.187 1.187 5 H -0.181 1.181 6 H -0.189 1.189 7 C -0.521 4.521 8 H 0.089 0.911 9 C 0.076 3.924 10 C -0.220 4.220 11 C 0.088 3.912 12 N -0.302 5.302 13 C 0.131 3.869 14 C -0.232 4.232 15 C -0.089 4.089 16 C -0.073 4.073 17 F -0.132 7.132 18 C 0.119 3.881 19 N -0.401 5.401 20 C -0.260 4.260 21 C -0.255 4.255 22 C -0.115 4.115 23 C -0.101 4.101 24 F -0.152 7.152 25 H 0.103 0.897 26 H 0.135 0.865 27 H 0.248 0.752 28 H 0.131 0.869 29 H 0.162 0.838 30 H 0.236 0.764 31 H 0.244 0.756 32 H 0.167 0.833 33 H 0.140 0.860 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.532 -5.810 -8.246 13.879 hybrid contribution 0.330 0.734 0.062 0.807 sum -9.202 -5.077 -8.184 13.320 Atomic orbital electron populations 1.69863 1.08784 1.30972 1.33689 1.26673 0.95470 1.04222 0.90936 0.85173 0.79316 0.76067 0.79314 1.18651 1.18113 1.18938 1.19695 0.98903 0.92709 1.40795 0.91113 1.17708 0.92430 0.91486 0.90754 1.20763 1.01797 0.96288 1.03179 1.17514 0.87861 0.93180 0.92661 1.41991 1.16821 1.35924 1.35497 1.17646 0.87001 0.89255 0.92977 1.20587 1.01745 1.04485 0.96390 1.20786 0.93513 0.96200 0.98386 1.17020 0.94693 1.01567 0.94045 1.91374 1.58138 1.67440 1.96283 1.17383 0.91161 0.92647 0.86896 1.42291 1.37124 1.52536 1.08170 1.20075 1.01211 1.06009 0.98753 1.20236 1.01316 0.95756 1.08192 1.20604 0.96249 0.96060 0.98589 1.18129 0.93283 0.95516 1.03209 1.91223 1.55217 1.97282 1.71495 0.89660 0.86528 0.75162 0.86884 0.83792 0.76360 0.75642 0.83275 0.85982 0.85321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.32 11.04 21.82 0.24 -40.08 16 2 C 0.04 2.16 5.10 85.25 0.44 2.60 16 3 Si 0.98 37.25 29.60 68.60 2.03 39.28 16 4 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 5 H -0.26 -9.12 7.11 99.48 0.71 -8.42 16 6 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 7 C -0.49 -26.68 8.77 23.43 0.21 -26.48 16 8 H 0.07 3.88 7.74 -2.91 -0.02 3.85 16 9 C 0.08 4.29 5.57 -21.27 -0.12 4.17 16 10 C -0.20 -9.69 8.61 22.84 0.20 -9.49 16 11 C 0.18 7.75 5.73 38.15 0.22 7.97 16 12 N -0.68 -23.23 5.44 -180.62 -0.98 -24.22 16 13 C 0.23 7.25 5.94 38.17 0.23 7.48 16 14 C -0.21 -6.81 8.15 22.43 0.18 -6.63 16 15 C -0.07 -1.96 10.01 22.27 0.22 -1.73 16 16 C -0.05 -1.30 7.31 22.49 0.16 -1.14 16 17 F -0.15 -4.01 16.63 44.97 0.75 -3.27 16 18 C 0.23 5.41 6.76 38.19 0.26 5.66 16 19 N -0.86 -13.97 9.09 -51.26 -0.47 -14.43 16 20 C -0.23 -5.85 9.79 22.52 0.22 -5.63 16 21 C -0.23 -9.60 8.02 22.59 0.18 -9.42 16 22 C -0.10 -4.19 10.00 22.25 0.22 -3.97 16 23 C -0.08 -4.13 7.31 22.90 0.17 -3.96 16 24 F -0.17 -8.94 16.70 44.97 0.75 -8.19 16 25 H 0.29 13.03 8.30 -92.71 -0.77 12.26 16 26 H 0.12 5.87 6.21 -2.91 -0.02 5.85 16 27 H 0.41 12.34 8.91 -92.71 -0.83 11.52 16 28 H 0.11 4.22 6.70 -2.91 -0.02 4.20 16 29 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 30 H 0.41 5.78 8.31 -92.71 -0.77 5.01 16 31 H 0.41 4.66 8.84 -92.71 -0.82 3.84 16 32 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 33 H 0.12 4.54 7.00 -2.91 -0.02 4.52 16 34 H 0.13 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -59.67 303.08 3.89 -55.78 By element: Atomic # 1 Polarization: 36.93 SS G_CDS: -1.22 Total: 35.71 kcal Atomic # 6 Polarization: -43.37 SS G_CDS: 2.78 Total: -40.58 kcal Atomic # 7 Polarization: -77.52 SS G_CDS: -1.21 Total: -78.73 kcal Atomic # 9 Polarization: -12.95 SS G_CDS: 1.50 Total: -11.45 kcal Atomic # 14 Polarization: 37.25 SS G_CDS: 2.03 Total: 39.28 kcal Total: -59.67 3.89 -55.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212350651.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.734 kcal (2) G-P(sol) polarization free energy of solvation -59.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds