Wall clock time and date at job start Tue Mar 31 2020 07:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38668 * 120.80608 * 2 1 4 4 C 1.38111 * 119.29307 * 180.26647 * 3 2 1 5 5 N 1.31987 * 120.95871 * 359.72127 * 4 3 2 6 6 C 1.31914 * 121.76357 * 359.97438 * 5 4 3 7 7 F 1.35098 * 119.70197 * 179.97438 * 6 5 4 8 8 C 1.39119 * 120.80744 * 179.73929 * 2 1 3 9 9 N 1.39872 * 120.50164 * 0.03269 * 8 2 1 10 10 C 1.39781 * 119.99787 * 206.30494 * 9 8 2 11 11 C 1.39433 * 119.91861 * 38.76913 * 10 9 8 12 12 C 1.38359 * 120.46420 * 180.25369 * 11 10 9 13 13 C 1.38024 * 120.28601 * 359.44193 * 12 11 10 14 14 F 1.35099 * 120.08449 * 180.27407 * 13 12 11 15 15 C 1.41017 * 119.82491 * 0.55271 * 13 12 11 16 16 C 1.41290 * 120.22413 * 179.74293 * 15 13 12 17 17 H 1.08004 * 120.00137 * 26.11382 * 16 15 13 18 18 C 1.39913 * 120.00078 * 206.10897 * 16 15 13 19 19 N 1.30859 * 120.00122 * 16.23033 * 18 16 15 20 20 Si 1.86805 * 120.00130 * 196.22454 * 18 16 15 21 21 H 1.48496 * 109.46921 * 90.00019 * 20 18 16 22 22 H 1.48501 * 109.47258 * 210.00178 * 20 18 16 23 23 H 1.48502 * 109.46871 * 330.00285 * 20 18 16 24 24 C 1.38194 * 119.91425 * 218.74603 * 10 9 8 25 25 H 1.08996 * 109.47932 * 270.25366 * 1 2 3 26 26 H 1.09005 * 109.47085 * 30.26247 * 1 2 3 27 27 H 1.09008 * 109.47307 * 150.25266 * 1 2 3 28 28 H 1.07997 * 120.35417 * 359.97438 * 3 2 1 29 29 H 1.08004 * 119.52322 * 179.69689 * 4 3 2 30 30 H 0.97000 * 119.99414 * 26.30644 * 9 8 2 31 31 H 1.07995 * 119.76748 * 359.97438 * 11 10 9 32 32 H 1.07991 * 119.85526 * 179.70154 * 12 11 10 33 33 H 0.96991 * 119.99930 * 179.97438 * 19 18 16 34 34 H 1.07993 * 120.14691 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2171 1.1910 0.0000 4 6 3.5977 1.1546 -0.0056 5 7 4.2466 0.0052 -0.0054 6 6 3.6113 -1.1509 0.0006 7 9 4.3173 -2.3027 0.0000 8 6 2.2195 -1.1949 0.0054 9 7 1.5479 -2.4219 0.0103 10 6 2.1641 -3.5536 0.5519 11 6 2.9383 -3.4388 1.7059 12 6 3.5576 -4.5507 2.2486 13 6 3.4058 -5.7893 1.6588 14 9 4.0078 -6.8732 2.1954 15 6 2.6255 -5.9194 0.4914 16 6 2.4689 -7.1823 -0.1224 17 1 2.5592 -8.0836 0.4659 18 6 2.1968 -7.2654 -1.4922 19 7 2.3973 -6.2274 -2.2634 20 14 1.5475 -8.8584 -2.2206 21 1 0.0631 -8.8528 -2.1788 22 1 2.0026 -8.9806 -3.6288 23 1 2.0605 -10.0081 -1.4329 24 6 2.0041 -4.7836 -0.0575 25 1 -0.3635 0.0045 1.0276 26 1 -0.3633 0.8877 -0.5179 27 1 -0.3634 -0.8923 -0.5099 28 1 1.6962 2.1371 -0.0004 29 1 4.1546 2.0800 -0.0106 30 1 0.6547 -2.4873 -0.3621 31 1 3.0591 -2.4745 2.1768 32 1 4.1589 -4.4497 3.1399 33 1 2.2090 -6.2852 -3.2131 34 1 1.4044 -4.8721 -0.9512 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212561175.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:03 Heat of formation + Delta-G solvation = -44.666521 kcal Electronic energy + Delta-G solvation = -22595.800327 eV Core-core repulsion = 18935.672439 eV Total energy + Delta-G solvation = -3660.127889 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.81720 -49.19204 -41.28637 -39.60274 -36.97888 -35.51581 -34.24245 -31.74582 -31.28158 -29.21270 -28.43548 -27.31198 -24.28171 -23.64535 -22.89855 -22.17213 -19.55432 -18.76297 -18.31789 -18.07221 -17.96054 -17.34924 -16.96513 -16.61005 -16.24851 -15.94980 -15.55732 -14.92644 -14.75546 -14.60701 -14.48147 -14.21645 -13.91653 -13.59914 -13.49794 -13.44545 -13.42769 -12.97739 -12.83673 -12.66956 -12.22431 -12.05599 -11.95791 -11.42034 -11.11420 -10.67320 -10.24402 -9.62685 -9.49421 -8.74596 -8.20187 -6.47902 0.01790 0.15988 0.81807 0.88917 1.36303 1.47117 1.50236 2.17592 2.27526 2.58908 2.70133 2.79012 3.45821 3.57595 3.83425 3.97533 4.00433 4.18557 4.36544 4.51671 4.59862 4.73849 4.79398 4.88636 4.92856 5.00757 5.12566 5.20717 5.22650 5.33587 5.57598 5.61770 5.77860 5.89949 5.96231 6.25767 6.59677 6.62627 6.74083 6.82108 6.87235 8.23319 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.019948 B = 0.005167 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.306548 B = 5417.606684 C = 6075.308231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.080 4.080 3 C -0.131 4.131 4 C 0.081 3.919 5 N -0.521 5.521 6 C 0.217 3.783 7 F -0.127 7.127 8 C 0.117 3.883 9 N -0.669 5.669 10 C 0.176 3.824 11 C -0.221 4.221 12 C -0.100 4.100 13 C -0.073 4.073 14 F -0.170 7.170 15 C 0.079 3.921 16 C -0.491 4.491 17 H 0.073 0.927 18 C 0.040 3.960 19 N -0.815 5.815 20 Si 0.987 3.013 21 H -0.254 1.254 22 H -0.265 1.265 23 H -0.263 1.263 24 C -0.185 4.185 25 H 0.087 0.913 26 H 0.106 0.894 27 H 0.062 0.938 28 H 0.190 0.810 29 H 0.199 0.801 30 H 0.415 0.585 31 H 0.105 0.895 32 H 0.126 0.874 33 H 0.292 0.708 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.031 14.796 0.271 16.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.091 4.091 3 C -0.150 4.150 4 C -0.078 4.078 5 N -0.236 5.236 6 C 0.061 3.939 7 F -0.107 7.107 8 C 0.013 3.987 9 N -0.295 5.295 10 C 0.080 3.920 11 C -0.242 4.242 12 C -0.119 4.119 13 C -0.093 4.093 14 F -0.150 7.150 15 C 0.075 3.925 16 C -0.520 4.520 17 H 0.091 0.909 18 C -0.176 4.176 19 N -0.440 5.440 20 Si 0.807 3.193 21 H -0.178 1.178 22 H -0.190 1.190 23 H -0.187 1.187 24 C -0.208 4.208 25 H 0.106 0.894 26 H 0.124 0.876 27 H 0.081 0.919 28 H 0.208 0.792 29 H 0.215 0.785 30 H 0.255 0.745 31 H 0.123 0.877 32 H 0.144 0.856 33 H 0.103 0.897 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.004 14.706 0.085 15.885 hybrid contribution -0.503 -1.553 -0.313 1.662 sum -6.506 13.154 -0.228 14.677 Atomic orbital electron populations 1.20769 0.87110 1.04384 1.03970 1.20395 0.98681 0.89778 1.00286 1.22350 0.94476 0.99234 0.98981 1.23029 0.93035 0.94104 0.97603 1.66925 1.43178 0.98293 1.15219 1.18255 0.86367 0.82273 1.07014 1.91661 1.79709 1.45631 1.93670 1.18642 0.90006 0.88219 1.01854 1.41778 1.18876 1.04027 1.64787 1.17486 0.96160 0.86324 0.92016 1.20054 1.08497 0.97164 0.98532 1.20522 1.00501 0.90878 1.00032 1.18095 1.06223 0.83312 1.01718 1.91227 1.82793 1.54930 1.86002 1.17715 0.89645 0.94927 0.90205 1.19676 1.44429 0.93152 0.94693 0.90889 1.26747 0.92115 1.02063 0.96720 1.69872 1.33968 1.33049 1.07126 0.85128 0.79600 0.76939 0.77625 1.17817 1.18954 1.18731 1.20767 1.06743 0.91101 1.02163 0.89434 0.87576 0.91879 0.79245 0.78454 0.74520 0.87687 0.85619 0.89745 0.86241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 9.81 71.23 0.70 -0.89 16 2 C -0.08 -1.80 5.93 -19.55 -0.12 -1.92 16 3 C -0.13 -2.27 9.81 22.34 0.22 -2.05 16 4 C 0.08 1.79 11.17 84.64 0.95 2.74 16 5 N -0.52 -17.70 10.37 -196.40 -2.04 -19.73 16 6 C 0.22 8.48 7.44 84.93 0.63 9.12 16 7 F -0.13 -6.10 13.57 44.97 0.61 -5.49 16 8 C 0.12 3.89 6.00 38.31 0.23 4.12 16 9 N -0.67 -24.24 5.26 -180.11 -0.95 -25.19 16 10 C 0.18 7.97 5.07 38.15 0.19 8.17 16 11 C -0.22 -10.03 7.12 22.59 0.16 -9.87 16 12 C -0.10 -4.77 10.00 22.25 0.22 -4.55 16 13 C -0.07 -3.94 7.31 22.90 0.17 -3.77 16 14 F -0.17 -9.17 16.72 44.97 0.75 -8.42 16 15 C 0.08 4.41 5.56 -21.27 -0.12 4.29 16 16 C -0.49 -27.35 8.77 23.43 0.21 -27.14 16 17 H 0.07 4.07 7.75 -2.91 -0.02 4.05 16 18 C 0.04 2.01 5.16 85.24 0.44 2.45 16 19 N -0.82 -42.29 10.97 21.82 0.24 -42.05 16 20 Si 0.99 38.25 29.59 68.60 2.03 40.28 16 21 H -0.25 -9.26 7.11 99.48 0.71 -8.56 16 22 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 23 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 24 C -0.19 -9.56 8.59 22.84 0.20 -9.36 16 25 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.11 0.94 8.10 -2.38 -0.02 0.92 16 27 H 0.06 1.02 6.55 -2.38 -0.02 1.01 16 28 H 0.19 1.39 8.06 -2.91 -0.02 1.36 16 29 H 0.20 2.68 8.06 -2.91 -0.02 2.66 16 30 H 0.42 12.80 7.21 -92.71 -0.67 12.13 16 31 H 0.11 4.46 7.16 -2.91 -0.02 4.44 16 32 H 0.13 5.29 8.06 -2.92 -0.02 5.26 16 33 H 0.29 13.57 8.30 -92.71 -0.77 12.80 16 34 H 0.12 6.26 6.22 -2.91 -0.02 6.24 16 Total: -1.00 -69.53 299.13 5.22 -64.31 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 0.50 Total: 24.98 kcal Atomic # 6 Polarization: -32.76 SS G_CDS: 4.08 Total: -28.68 kcal Atomic # 7 Polarization: -84.23 SS G_CDS: -2.74 Total: -86.97 kcal Atomic # 9 Polarization: -15.28 SS G_CDS: 1.36 Total: -13.91 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Total: -69.53 5.22 -64.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212561175.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.640 kcal (2) G-P(sol) polarization free energy of solvation -69.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds