Wall clock time and date at job start Tue Mar 31 2020 07:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38452 * 120.80419 * 2 1 4 4 C 1.38533 * 119.21770 * 180.27075 * 3 2 1 5 5 F 1.35103 * 119.56474 * 179.74426 * 4 3 2 6 6 N 1.32030 * 120.86786 * 359.77198 * 4 3 2 7 7 C 1.31868 * 121.76363 * 359.97039 * 6 4 3 8 8 C 1.38833 * 120.69018 * 0.02644 * 7 6 4 9 9 N 1.39868 * 120.46456 * 179.97438 * 8 7 6 10 10 C 1.39796 * 119.99980 * 7.63890 * 9 8 7 11 11 C 1.39436 * 119.91766 * 42.08559 * 10 9 8 12 12 C 1.38350 * 120.46528 * 180.02562 * 11 10 9 13 13 C 1.38017 * 120.29219 * 359.97438 * 12 11 10 14 14 F 1.35097 * 120.08987 * 179.97438 * 13 12 11 15 15 C 1.41020 * 119.82231 * 0.02562 * 13 12 11 16 16 C 1.41291 * 120.22507 * 179.72218 * 15 13 12 17 17 H 1.07993 * 119.99821 * 330.61371 * 16 15 13 18 18 C 1.39921 * 119.99623 * 150.60853 * 16 15 13 19 19 N 1.30849 * 120.00157 * 350.87405 * 18 16 15 20 20 Si 1.86800 * 119.99333 * 170.87251 * 18 16 15 21 21 H 1.48495 * 109.47488 * 60.00360 * 20 18 16 22 22 H 1.48512 * 109.46733 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47246 * 299.99957 * 20 18 16 24 24 C 1.38188 * 119.91703 * 222.08048 * 10 9 8 25 25 H 1.09001 * 109.47048 * 270.20341 * 1 2 3 26 26 H 1.08996 * 109.47357 * 30.20346 * 1 2 3 27 27 H 1.09001 * 109.47152 * 150.20563 * 1 2 3 28 28 H 1.08001 * 120.39670 * 0.02562 * 3 2 1 29 29 H 1.08003 * 119.65633 * 180.02562 * 7 6 4 30 30 H 0.96996 * 120.00295 * 187.63054 * 9 8 7 31 31 H 1.08001 * 119.76456 * 0.02562 * 11 10 9 32 32 H 1.08000 * 119.85562 * 179.97438 * 12 11 10 33 33 H 0.97004 * 119.99592 * 179.97438 * 19 18 16 34 34 H 1.07999 * 120.14795 * 0.03064 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2161 1.1892 0.0000 4 6 3.6008 1.1508 -0.0057 5 9 4.2997 2.3071 -0.0110 6 7 4.2466 -0.0007 -0.0066 7 6 3.6082 -1.1546 -0.0016 8 6 2.2205 -1.1966 0.0044 9 7 1.5483 -2.4231 0.0092 10 6 2.2652 -3.6126 0.1689 11 6 3.2942 -3.6837 1.1072 12 6 4.0114 -4.8549 1.2744 13 6 3.7150 -5.9674 0.5132 14 9 4.4182 -7.1088 0.6794 15 6 2.6767 -5.9091 -0.4393 16 6 2.3700 -7.0411 -1.2273 17 1 3.1437 -7.7528 -1.4741 18 6 1.0637 -7.2398 -1.6875 19 7 0.0921 -6.4827 -1.2460 20 14 0.7069 -8.5860 -2.9325 21 1 1.0903 -9.9023 -2.3619 22 1 -0.7426 -8.5895 -3.2560 23 1 1.4891 -8.3361 -4.1697 24 6 1.9522 -4.7150 -0.6033 25 1 -0.3633 0.0036 1.0277 26 1 -0.3634 0.8881 -0.5170 27 1 -0.3633 -0.8918 -0.5106 28 1 1.6958 2.1356 0.0004 29 1 4.1708 -2.0766 -0.0021 30 1 0.5846 -2.4485 -0.0983 31 1 3.5330 -2.8183 1.7077 32 1 4.8067 -4.8989 2.0037 33 1 -0.8135 -6.6203 -1.5654 34 1 1.1554 -4.6595 -1.3302 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212818821.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:07 Heat of formation + Delta-G solvation = -34.887518 kcal Electronic energy + Delta-G solvation = -21941.099684 eV Core-core repulsion = 18281.395845 eV Total energy + Delta-G solvation = -3659.703839 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.64556 -47.34380 -40.33112 -37.95471 -35.40347 -34.02657 -33.18156 -30.06952 -29.72872 -28.07508 -27.22072 -25.58286 -23.16054 -22.21340 -21.32792 -20.55084 -17.94496 -17.63222 -17.25796 -16.43519 -16.21340 -15.82554 -15.69093 -15.01731 -14.69011 -14.32323 -14.05389 -13.87508 -13.54066 -13.33036 -13.06614 -12.80215 -12.65587 -12.62933 -12.18382 -12.05177 -11.70049 -11.63966 -11.39709 -11.17701 -10.85748 -10.42993 -10.19996 -9.72761 -9.52917 -9.43442 -9.38182 -8.01481 -7.74898 -7.04358 -6.65650 -4.65007 1.17431 1.31562 2.44354 2.58026 2.95782 2.99400 3.02412 3.59895 3.78014 3.82372 3.96599 4.35340 4.65251 4.74453 4.96637 5.20423 5.29630 5.42662 5.48255 5.66720 5.73983 5.85519 5.94465 6.01381 6.21539 6.25371 6.58375 6.68795 6.80695 6.92234 6.99562 7.29947 7.35373 7.58197 7.75622 7.87358 7.97465 8.06932 8.34573 8.54709 8.60800 9.96318 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.020577 B = 0.004333 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.386423 B = 6460.511255 C = 7344.211590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.104 4.104 3 C -0.149 4.149 4 C 0.231 3.769 5 F -0.126 7.126 6 N -0.478 5.478 7 C 0.073 3.927 8 C 0.163 3.837 9 N -0.663 5.663 10 C 0.147 3.853 11 C -0.242 4.242 12 C -0.103 4.103 13 C -0.030 4.030 14 F -0.161 7.161 15 C 0.102 3.898 16 C -0.448 4.448 17 H 0.085 0.915 18 C 0.074 3.926 19 N -0.797 5.797 20 Si 0.918 3.082 21 H -0.263 1.263 22 H -0.277 1.277 23 H -0.262 1.262 24 C -0.158 4.158 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.141 0.859 29 H 0.181 0.819 30 H 0.407 0.593 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.284 0.716 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.864 9.268 0.623 9.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.116 4.116 3 C -0.171 4.171 4 C 0.077 3.923 5 F -0.106 7.106 6 N -0.192 5.192 7 C -0.090 4.090 8 C 0.056 3.944 9 N -0.284 5.284 10 C 0.053 3.947 11 C -0.263 4.263 12 C -0.123 4.123 13 C -0.051 4.051 14 F -0.140 7.140 15 C 0.098 3.902 16 C -0.478 4.478 17 H 0.103 0.897 18 C -0.143 4.143 19 N -0.422 5.422 20 Si 0.742 3.258 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.186 1.186 24 C -0.180 4.180 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.159 0.841 29 H 0.198 0.802 30 H 0.245 0.755 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.095 0.905 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.102 9.200 0.617 9.457 hybrid contribution -1.262 -0.531 -0.441 1.438 sum -3.364 8.669 0.176 9.300 Atomic orbital electron populations 1.20631 0.89806 1.03121 1.02792 1.19618 0.96709 0.90625 1.04611 1.21350 0.92460 0.99240 1.04031 1.17866 0.86704 0.81717 1.06061 1.91549 1.80160 1.44563 1.94286 1.66925 1.41721 0.97555 1.12977 1.22734 0.90190 0.95135 1.00929 1.18779 0.93129 0.86388 0.96062 1.42174 1.08955 1.01347 1.75954 1.17563 0.95159 0.85207 0.96726 1.20123 1.03440 0.98276 1.04503 1.20354 1.00132 0.92241 0.99583 1.17939 1.00844 0.82797 1.03491 1.91287 1.78003 1.49533 1.95178 1.17417 0.89579 0.93179 0.90073 1.19515 0.95064 1.06450 1.26726 0.89738 1.25910 0.95711 0.97204 0.95512 1.69744 1.01515 1.35344 1.35624 0.86188 0.77932 0.80966 0.80726 1.18734 1.20160 1.18640 1.21062 1.04961 0.90657 1.01288 0.90619 0.90876 0.91272 0.84112 0.80206 0.75543 0.87675 0.87440 0.90540 0.84866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 9.70 36.01 0.35 -0.70 16 2 C -0.10 -1.36 5.93 -104.14 -0.62 -1.98 16 3 C -0.15 -1.93 9.78 -39.39 -0.39 -2.32 16 4 C 0.23 3.62 8.40 -17.36 -0.15 3.47 16 5 F -0.13 -1.94 17.29 2.25 0.04 -1.90 16 6 N -0.48 -8.36 10.37 -13.43 -0.14 -8.50 16 7 C 0.07 1.25 9.23 -17.32 -0.16 1.09 16 8 C 0.16 2.58 6.42 -83.57 -0.54 2.04 16 9 N -0.66 -10.99 5.41 -8.33 -0.05 -11.03 16 10 C 0.15 2.94 5.86 -83.80 -0.49 2.45 16 11 C -0.24 -4.79 7.40 -39.09 -0.29 -5.07 16 12 C -0.10 -2.16 10.00 -39.62 -0.40 -2.56 16 13 C -0.03 -0.72 7.31 -38.61 -0.28 -1.00 16 14 F -0.16 -3.86 16.76 2.25 0.04 -3.82 16 15 C 0.10 2.52 5.55 -106.78 -0.59 1.92 16 16 C -0.45 -11.26 8.75 -37.79 -0.33 -11.59 16 17 H 0.08 2.10 7.77 -52.49 -0.41 1.69 16 18 C 0.07 1.73 5.28 -17.34 -0.09 1.64 16 19 N -0.80 -18.67 10.81 55.55 0.60 -18.07 16 20 Si 0.92 17.64 29.57 -169.99 -5.03 12.61 16 21 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 22 H -0.28 -5.14 7.11 56.52 0.40 -4.74 16 23 H -0.26 -5.01 7.11 56.52 0.40 -4.60 16 24 C -0.16 -3.60 8.57 -38.70 -0.33 -3.94 16 25 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 27 H 0.07 0.67 6.58 -51.93 -0.34 0.33 16 28 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.18 3.23 5.40 -52.48 -0.28 2.94 16 30 H 0.41 6.02 6.93 -40.82 -0.28 5.74 16 31 H 0.11 1.92 6.68 -52.49 -0.35 1.57 16 32 H 0.11 1.99 8.06 -52.49 -0.42 1.57 16 33 H 0.28 6.05 8.30 -40.82 -0.34 5.71 16 34 H 0.13 3.12 6.21 -52.49 -0.33 2.80 16 LS Contribution 299.93 15.07 4.52 4.52 Total: -1.00 -25.86 299.93 -7.13 -32.99 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -2.82 Total: 9.72 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -4.30 Total: -16.53 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.42 Total: -37.60 kcal Atomic # 9 Polarization: -5.80 SS G_CDS: 0.08 Total: -5.72 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.61 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -25.86 -7.13 -32.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212818821.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.896 kcal (2) G-P(sol) polarization free energy of solvation -25.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds