Wall clock time and date at job start Tue Mar 31 2020 07:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38452 * 120.80419 * 2 1 4 4 C 1.38533 * 119.21770 * 180.27075 * 3 2 1 5 5 F 1.35103 * 119.56474 * 179.74426 * 4 3 2 6 6 N 1.32030 * 120.86786 * 359.77198 * 4 3 2 7 7 C 1.31868 * 121.76363 * 359.97039 * 6 4 3 8 8 C 1.38833 * 120.69018 * 0.02644 * 7 6 4 9 9 N 1.39868 * 120.46456 * 179.97438 * 8 7 6 10 10 C 1.39796 * 119.99980 * 7.63890 * 9 8 7 11 11 C 1.39436 * 119.91766 * 42.08559 * 10 9 8 12 12 C 1.38350 * 120.46528 * 180.02562 * 11 10 9 13 13 C 1.38017 * 120.29219 * 359.97438 * 12 11 10 14 14 F 1.35097 * 120.08987 * 179.97438 * 13 12 11 15 15 C 1.41020 * 119.82231 * 0.02562 * 13 12 11 16 16 C 1.41291 * 120.22507 * 179.72218 * 15 13 12 17 17 H 1.07993 * 119.99821 * 330.61371 * 16 15 13 18 18 C 1.39921 * 119.99623 * 150.60853 * 16 15 13 19 19 N 1.30849 * 120.00157 * 350.87405 * 18 16 15 20 20 Si 1.86800 * 119.99333 * 170.87251 * 18 16 15 21 21 H 1.48495 * 109.47488 * 60.00360 * 20 18 16 22 22 H 1.48512 * 109.46733 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47246 * 299.99957 * 20 18 16 24 24 C 1.38188 * 119.91703 * 222.08048 * 10 9 8 25 25 H 1.09001 * 109.47048 * 270.20341 * 1 2 3 26 26 H 1.08996 * 109.47357 * 30.20346 * 1 2 3 27 27 H 1.09001 * 109.47152 * 150.20563 * 1 2 3 28 28 H 1.08001 * 120.39670 * 0.02562 * 3 2 1 29 29 H 1.08003 * 119.65633 * 180.02562 * 7 6 4 30 30 H 0.96996 * 120.00295 * 187.63054 * 9 8 7 31 31 H 1.08001 * 119.76456 * 0.02562 * 11 10 9 32 32 H 1.08000 * 119.85562 * 179.97438 * 12 11 10 33 33 H 0.97004 * 119.99592 * 179.97438 * 19 18 16 34 34 H 1.07999 * 120.14795 * 0.03064 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2161 1.1892 0.0000 4 6 3.6008 1.1508 -0.0057 5 9 4.2997 2.3071 -0.0110 6 7 4.2466 -0.0007 -0.0066 7 6 3.6082 -1.1546 -0.0016 8 6 2.2205 -1.1966 0.0044 9 7 1.5483 -2.4231 0.0092 10 6 2.2652 -3.6126 0.1689 11 6 3.2942 -3.6837 1.1072 12 6 4.0114 -4.8549 1.2744 13 6 3.7150 -5.9674 0.5132 14 9 4.4182 -7.1088 0.6794 15 6 2.6767 -5.9091 -0.4393 16 6 2.3700 -7.0411 -1.2273 17 1 3.1437 -7.7528 -1.4741 18 6 1.0637 -7.2398 -1.6875 19 7 0.0921 -6.4827 -1.2460 20 14 0.7069 -8.5860 -2.9325 21 1 1.0903 -9.9023 -2.3619 22 1 -0.7426 -8.5895 -3.2560 23 1 1.4891 -8.3361 -4.1697 24 6 1.9522 -4.7150 -0.6033 25 1 -0.3633 0.0036 1.0277 26 1 -0.3634 0.8881 -0.5170 27 1 -0.3633 -0.8918 -0.5106 28 1 1.6958 2.1356 0.0004 29 1 4.1708 -2.0766 -0.0021 30 1 0.5846 -2.4485 -0.0983 31 1 3.5330 -2.8183 1.7077 32 1 4.8067 -4.8989 2.0037 33 1 -0.8135 -6.6203 -1.5654 34 1 1.1554 -4.6595 -1.3302 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212818821.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:06 Heat of formation + Delta-G solvation = -47.893821 kcal Electronic energy + Delta-G solvation = -21941.663680 eV Core-core repulsion = 18281.395845 eV Total energy + Delta-G solvation = -3660.267835 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.84653 -49.18335 -41.58601 -39.53160 -36.86827 -35.54865 -34.49659 -31.76310 -31.13739 -29.19152 -28.59330 -27.32524 -24.44525 -23.65371 -22.75109 -22.15475 -19.53162 -18.98374 -18.45028 -17.96830 -17.86152 -17.33138 -16.99020 -16.56300 -16.28014 -15.98385 -15.47199 -15.03440 -14.82324 -14.49754 -14.46568 -14.44105 -13.93027 -13.76663 -13.59718 -13.40894 -13.30190 -12.97505 -12.86593 -12.71169 -12.46489 -12.06773 -11.75407 -11.41092 -11.16347 -10.70525 -10.48477 -9.54860 -9.48899 -8.73989 -8.15740 -6.49111 -0.01795 0.12075 0.77888 0.86824 1.38738 1.48363 1.49318 2.18886 2.26134 2.55102 2.68285 2.78345 3.42886 3.58838 3.66452 3.83704 4.01581 4.20868 4.33268 4.51390 4.53973 4.58199 4.78198 4.78696 4.94469 4.99085 5.10418 5.18903 5.19369 5.32873 5.56653 5.63127 5.75817 5.91086 5.97691 6.26767 6.55113 6.61285 6.75847 6.77464 6.86999 8.25816 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.020577 B = 0.004333 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.386423 B = 6460.511255 C = 7344.211590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.085 4.085 3 C -0.135 4.135 4 C 0.222 3.778 5 F -0.127 7.127 6 N -0.507 5.507 7 C 0.055 3.945 8 C 0.149 3.851 9 N -0.659 5.659 10 C 0.164 3.836 11 C -0.230 4.230 12 C -0.099 4.099 13 C -0.066 4.066 14 F -0.170 7.170 15 C 0.075 3.925 16 C -0.490 4.490 17 H 0.070 0.930 18 C 0.041 3.959 19 N -0.817 5.817 20 Si 0.983 3.017 21 H -0.266 1.266 22 H -0.261 1.261 23 H -0.261 1.261 24 C -0.174 4.174 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.069 0.931 28 H 0.182 0.818 29 H 0.164 0.836 30 H 0.416 0.584 31 H 0.125 0.875 32 H 0.132 0.868 33 H 0.292 0.708 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.613 11.430 0.695 12.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.097 4.097 3 C -0.156 4.156 4 C 0.066 3.934 5 F -0.106 7.106 6 N -0.222 5.222 7 C -0.107 4.107 8 C 0.044 3.956 9 N -0.283 5.283 10 C 0.069 3.931 11 C -0.252 4.252 12 C -0.118 4.118 13 C -0.086 4.086 14 F -0.149 7.149 15 C 0.072 3.928 16 C -0.519 4.519 17 H 0.089 0.911 18 C -0.175 4.175 19 N -0.443 5.443 20 Si 0.803 3.197 21 H -0.190 1.190 22 H -0.185 1.185 23 H -0.185 1.185 24 C -0.196 4.196 25 H 0.110 0.890 26 H 0.119 0.881 27 H 0.088 0.912 28 H 0.199 0.801 29 H 0.181 0.819 30 H 0.256 0.744 31 H 0.143 0.857 32 H 0.150 0.850 33 H 0.103 0.897 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.855 11.398 0.700 12.052 hybrid contribution -0.681 -0.943 -0.391 1.227 sum -4.536 10.455 0.309 11.401 Atomic orbital electron populations 1.20785 0.86905 1.04549 1.04219 1.20042 0.98598 0.89394 1.01628 1.21720 0.91201 1.00820 1.01851 1.18228 0.87901 0.81227 1.05995 1.91550 1.80427 1.44370 1.94280 1.66798 1.42870 0.98268 1.14234 1.22464 0.90848 0.94679 1.02675 1.18857 0.92796 0.86831 0.97124 1.41981 1.09184 1.00564 1.76535 1.17526 0.94620 0.85729 0.95255 1.20363 1.02598 0.98320 1.03881 1.20634 1.00453 0.91590 0.99161 1.18242 1.01812 0.83577 1.04971 1.91244 1.78202 1.50150 1.95332 1.17752 0.90496 0.93975 0.90612 1.19657 0.95997 1.07195 1.29098 0.91130 1.26610 0.94882 0.99253 0.96726 1.69763 1.01976 1.36349 1.36186 0.85228 0.78405 0.77864 0.78157 1.19015 1.18462 1.18542 1.20976 1.05216 0.91221 1.02161 0.89022 0.88123 0.91236 0.80107 0.81896 0.74404 0.85699 0.85048 0.89664 0.85840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 9.70 71.24 0.69 -0.94 16 2 C -0.08 -1.93 5.93 -19.55 -0.12 -2.04 16 3 C -0.13 -2.95 9.78 22.39 0.22 -2.73 16 4 C 0.22 6.44 8.40 84.73 0.71 7.15 16 5 F -0.13 -3.63 17.29 44.97 0.78 -2.85 16 6 N -0.51 -17.28 10.37 -196.41 -2.04 -19.31 16 7 C 0.05 1.84 9.23 84.83 0.78 2.62 16 8 C 0.15 4.42 6.42 38.26 0.25 4.67 16 9 N -0.66 -20.98 5.41 -180.27 -0.97 -21.95 16 10 C 0.16 6.53 5.86 38.15 0.22 6.76 16 11 C -0.23 -8.99 7.40 22.59 0.17 -8.82 16 12 C -0.10 -4.16 10.00 22.24 0.22 -3.93 16 13 C -0.07 -3.23 7.31 22.90 0.17 -3.06 16 14 F -0.17 -8.51 16.76 44.97 0.75 -7.76 16 15 C 0.08 3.90 5.55 -21.26 -0.12 3.78 16 16 C -0.49 -25.78 8.75 23.43 0.21 -25.57 16 17 H 0.07 3.74 7.77 -2.91 -0.02 3.72 16 18 C 0.04 1.95 5.28 85.25 0.45 2.40 16 19 N -0.82 -38.80 10.81 21.82 0.24 -38.57 16 20 Si 0.98 36.55 29.57 68.60 2.03 38.57 16 21 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 22 H -0.26 -8.92 7.11 99.48 0.71 -8.22 16 23 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 24 C -0.17 -8.13 8.57 22.84 0.20 -7.94 16 25 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.10 1.03 8.10 -2.39 -0.02 1.01 16 27 H 0.07 1.09 6.58 -2.39 -0.02 1.08 16 28 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16 29 H 0.16 5.90 5.40 -2.91 -0.02 5.88 16 30 H 0.42 11.60 6.93 -92.71 -0.64 10.96 16 31 H 0.13 4.39 6.68 -2.91 -0.02 4.37 16 32 H 0.13 4.78 8.06 -2.91 -0.02 4.75 16 33 H 0.29 12.44 8.30 -92.71 -0.77 11.67 16 34 H 0.12 5.95 6.21 -2.91 -0.02 5.93 16 Total: -1.00 -58.11 299.93 5.36 -52.75 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: 0.53 Total: 26.78 kcal Atomic # 6 Polarization: -31.71 SS G_CDS: 4.05 Total: -27.66 kcal Atomic # 7 Polarization: -77.05 SS G_CDS: -2.77 Total: -79.83 kcal Atomic # 9 Polarization: -12.14 SS G_CDS: 1.53 Total: -10.61 kcal Atomic # 14 Polarization: 36.55 SS G_CDS: 2.03 Total: 38.57 kcal Total: -58.11 5.36 -52.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212818821.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.856 kcal (2) G-P(sol) polarization free energy of solvation -58.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds