Wall clock time and date at job start Tue Mar 31 2020 07:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38248 * 120.47795 * 2 1 4 4 F 1.35100 * 119.61463 * 359.97438 * 3 2 1 5 5 N 1.32159 * 120.77862 * 180.25197 * 3 2 1 6 6 C 1.32060 * 121.87728 * 359.43040 * 5 3 2 7 7 C 1.37802 * 120.87361 * 0.56731 * 6 5 3 8 8 C 1.39353 * 120.47780 * 179.97438 * 2 1 3 9 9 N 1.39226 * 120.85290 * 0.04850 * 8 2 1 10 10 C 1.39842 * 120.00177 * 172.75390 * 9 8 2 11 11 C 1.39418 * 119.91411 * 138.15605 * 10 9 8 12 12 C 1.38359 * 120.46214 * 179.97438 * 11 10 9 13 13 C 1.38010 * 120.29144 * 0.02636 * 12 11 10 14 14 F 1.35104 * 120.08767 * 179.97438 * 13 12 11 15 15 C 1.41008 * 119.82125 * 359.97438 * 13 12 11 16 16 C 1.41294 * 120.22663 * 180.02562 * 15 13 12 17 17 H 1.08001 * 120.00170 * 329.41887 * 16 15 13 18 18 C 1.39916 * 120.00017 * 149.42365 * 16 15 13 19 19 N 1.30856 * 119.99944 * 348.80079 * 18 16 15 20 20 Si 1.86802 * 119.99955 * 168.80918 * 18 16 15 21 21 H 1.48497 * 109.47240 * 89.99842 * 20 18 16 22 22 H 1.48500 * 109.46974 * 209.99515 * 20 18 16 23 23 H 1.48497 * 109.47098 * 329.99302 * 20 18 16 24 24 C 1.38167 * 119.91251 * 317.89191 * 10 9 8 25 25 H 1.08999 * 109.46911 * 90.00333 * 1 2 3 26 26 H 1.09006 * 109.47593 * 210.00063 * 1 2 3 27 27 H 1.08995 * 109.47416 * 329.99998 * 1 2 3 28 28 H 1.07994 * 119.56598 * 180.31522 * 6 5 3 29 29 H 1.08001 * 120.43722 * 179.74394 * 7 6 5 30 30 H 0.97001 * 119.99863 * 352.75594 * 9 8 2 31 31 H 1.08004 * 119.76860 * 0.02911 * 11 10 9 32 32 H 1.08002 * 119.84942 * 180.02562 * 12 11 10 33 33 H 0.96999 * 119.99902 * 180.02562 * 19 18 16 34 34 H 1.07998 * 120.15129 * 359.97048 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2081 1.1915 0.0000 4 9 1.5345 2.3625 -0.0005 5 7 3.5297 1.1984 -0.0050 6 6 4.2330 0.0807 0.0010 7 6 3.6086 -1.1477 0.0011 8 6 2.2137 -1.2010 0.0005 9 7 1.5458 -2.4226 0.0001 10 6 2.2645 -3.6124 -0.1521 11 6 1.9446 -4.7226 0.6282 12 6 2.6480 -5.9057 0.4866 13 6 3.6757 -5.9991 -0.4298 14 9 4.3601 -7.1562 -0.5642 15 6 4.0095 -4.8838 -1.2253 16 6 5.0597 -4.9701 -2.1665 17 1 5.8984 -5.6249 -1.9813 18 6 5.0132 -4.2074 -3.3386 19 7 3.9107 -3.5862 -3.6716 20 14 6.5250 -4.0760 -4.4280 21 1 6.5069 -5.1684 -5.4336 22 1 6.5218 -2.7635 -5.1228 23 1 7.7479 -4.1913 -3.5936 24 6 3.2862 -3.6864 -1.0793 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5138 28 1 5.3118 0.1299 0.0018 29 1 4.1907 -2.0574 0.0018 30 1 0.5819 -2.4483 0.1053 31 1 1.1416 -4.6590 1.3476 32 1 2.3915 -6.7597 1.0960 33 1 3.8784 -3.0577 -4.4844 34 1 3.5306 -2.8277 -1.6869 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212845811.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:52 Heat of formation + Delta-G solvation = -48.631900 kcal Electronic energy + Delta-G solvation = -22365.236433 eV Core-core repulsion = 18704.936592 eV Total energy + Delta-G solvation = -3660.299841 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.02771 -49.18230 -41.50321 -39.55953 -37.03921 -35.52437 -33.88128 -32.10278 -31.36438 -29.49189 -28.21810 -27.24312 -24.25162 -23.77071 -22.85025 -22.12253 -19.73171 -19.35673 -18.38953 -17.99241 -17.30497 -17.15935 -17.02080 -16.57025 -16.26614 -16.02633 -15.92935 -14.95616 -14.79145 -14.72962 -14.48152 -14.31556 -13.90192 -13.77000 -13.60242 -13.47546 -13.28848 -12.98239 -12.80791 -12.68437 -12.32385 -12.09499 -11.99989 -11.43613 -11.15621 -10.67754 -9.85282 -9.77956 -9.47588 -8.71101 -8.36546 -6.47840 -0.01399 0.17520 0.82816 0.87507 1.38016 1.45146 1.51014 2.15117 2.17913 2.58378 2.70782 2.71983 3.43978 3.64050 3.79435 3.85922 4.03361 4.16831 4.31283 4.55985 4.59981 4.67748 4.72998 4.86273 4.95453 4.99393 5.06484 5.12079 5.18605 5.22706 5.59896 5.66155 5.76327 5.95944 5.98964 6.23067 6.46349 6.74309 6.76283 6.78006 6.84119 8.25519 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.014878 B = 0.005891 C = 0.004614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.540892 B = 4751.962853 C = 6066.968426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.232 4.232 3 C 0.319 3.681 4 F -0.115 7.115 5 N -0.571 5.571 6 C 0.158 3.842 7 C -0.249 4.249 8 C 0.266 3.734 9 N -0.652 5.652 10 C 0.151 3.849 11 C -0.219 4.219 12 C -0.102 4.102 13 C -0.062 4.062 14 F -0.170 7.170 15 C 0.072 3.928 16 C -0.489 4.489 17 H 0.072 0.928 18 C 0.042 3.958 19 N -0.819 5.819 20 Si 0.976 3.024 21 H -0.265 1.265 22 H -0.265 1.265 23 H -0.257 1.257 24 C -0.169 4.169 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.187 0.813 29 H 0.140 0.860 30 H 0.419 0.581 31 H 0.140 0.860 32 H 0.136 0.864 33 H 0.289 0.711 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.179 5.424 5.114 9.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.241 4.241 3 C 0.165 3.835 4 F -0.095 7.095 5 N -0.289 5.289 6 C 0.005 3.995 7 C -0.274 4.274 8 C 0.153 3.847 9 N -0.274 5.274 10 C 0.057 3.943 11 C -0.240 4.240 12 C -0.122 4.122 13 C -0.083 4.083 14 F -0.149 7.149 15 C 0.069 3.931 16 C -0.518 4.518 17 H 0.090 0.910 18 C -0.173 4.173 19 N -0.444 5.444 20 Si 0.797 3.203 21 H -0.190 1.190 22 H -0.189 1.189 23 H -0.181 1.181 24 C -0.191 4.191 25 H 0.096 0.904 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.204 0.796 29 H 0.158 0.842 30 H 0.259 0.741 31 H 0.158 0.842 32 H 0.154 0.846 33 H 0.099 0.901 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.795 6.254 4.904 9.282 hybrid contribution 0.004 -0.925 -0.715 1.169 sum -4.790 5.329 4.189 8.300 Atomic orbital electron populations 1.20556 0.87212 1.04242 1.03441 1.20092 0.99352 0.89882 1.14751 1.17752 0.87183 0.80653 0.97868 1.91553 1.78223 1.46297 1.93390 1.67045 1.06662 1.33894 1.21348 1.22483 1.00659 0.84924 0.91480 1.22195 0.93864 1.01010 1.10329 1.17738 0.91533 0.85592 0.89840 1.41912 1.09383 1.00742 1.75371 1.17611 0.95201 0.85909 0.95582 1.20390 1.06308 0.92651 1.04670 1.20670 0.94872 0.98967 0.97669 1.18306 0.99593 0.82462 1.07897 1.91251 1.79834 1.47801 1.96021 1.17751 0.93551 0.90062 0.91763 1.19619 1.05690 1.23266 1.03232 0.90988 1.26571 0.99533 0.92354 0.98858 1.69802 1.27420 1.23800 1.23396 0.85276 0.78269 0.78807 0.77989 1.19011 1.18902 1.18093 1.21042 1.00784 0.97937 0.99369 0.90389 0.89974 0.89798 0.79595 0.84195 0.74077 0.84198 0.84593 0.90054 0.85882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.04 9.50 71.23 0.68 -1.37 16 2 C -0.23 -6.75 5.92 -19.60 -0.12 -6.87 16 3 C 0.32 10.16 8.36 84.65 0.71 10.87 16 4 F -0.12 -3.45 16.51 44.97 0.74 -2.71 16 5 N -0.57 -19.28 10.37 -197.24 -2.05 -21.33 16 6 C 0.16 5.03 11.17 84.56 0.94 5.97 16 7 C -0.25 -8.66 8.12 22.49 0.18 -8.47 16 8 C 0.27 8.67 6.43 38.56 0.25 8.92 16 9 N -0.65 -20.57 5.39 -180.16 -0.97 -21.54 16 10 C 0.15 5.84 5.89 38.13 0.22 6.06 16 11 C -0.22 -7.83 9.97 22.58 0.23 -7.60 16 12 C -0.10 -4.02 10.00 22.24 0.22 -3.80 16 13 C -0.06 -2.95 7.31 22.89 0.17 -2.78 16 14 F -0.17 -8.24 16.77 44.97 0.75 -7.49 16 15 C 0.07 3.66 5.53 -21.26 -0.12 3.54 16 16 C -0.49 -25.38 8.73 23.43 0.20 -25.18 16 17 H 0.07 3.76 7.80 -2.91 -0.02 3.74 16 18 C 0.04 2.05 5.23 85.24 0.45 2.49 16 19 N -0.82 -40.44 10.97 21.82 0.24 -40.20 16 20 Si 0.98 37.22 29.57 68.60 2.03 39.25 16 21 H -0.27 -9.93 7.11 99.48 0.71 -9.23 16 22 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 23 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 24 C -0.17 -7.80 5.99 22.84 0.14 -7.66 16 25 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.08 1.41 6.57 -2.38 -0.02 1.40 16 27 H 0.08 1.56 7.65 -2.39 -0.02 1.54 16 28 H 0.19 4.77 8.06 -2.91 -0.02 4.75 16 29 H 0.14 5.39 5.50 -2.91 -0.02 5.37 16 30 H 0.42 10.52 6.94 -92.71 -0.64 9.88 16 31 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 32 H 0.14 4.48 8.06 -2.91 -0.02 4.46 16 33 H 0.29 13.10 8.30 -92.71 -0.77 12.33 16 34 H 0.12 6.01 4.96 -2.91 -0.01 5.99 16 Total: -1.00 -57.46 299.09 5.43 -52.03 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: 0.53 Total: 27.87 kcal Atomic # 6 Polarization: -30.03 SS G_CDS: 4.15 Total: -25.88 kcal Atomic # 7 Polarization: -80.29 SS G_CDS: -2.78 Total: -83.07 kcal Atomic # 9 Polarization: -11.69 SS G_CDS: 1.50 Total: -10.20 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 2.03 Total: 39.25 kcal Total: -57.46 5.43 -52.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212845811.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.394 kcal (2) G-P(sol) polarization free energy of solvation -57.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds