Wall clock time and date at job start Tue Mar 31 2020 07:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37845 * 120.43598 * 2 1 4 4 N 1.32031 * 120.87568 * 180.28562 * 3 2 1 5 5 C 1.32189 * 121.87156 * 359.73895 * 4 3 2 6 6 F 1.35103 * 119.60518 * 179.97438 * 5 4 3 7 7 C 1.38210 * 120.78410 * 359.97438 * 5 4 3 8 8 C 1.39378 * 119.04216 * 0.02562 * 7 5 4 9 9 N 1.39234 * 120.84789 * 179.97438 * 8 7 5 10 10 C 1.39830 * 120.00286 * 7.55034 * 9 8 7 11 11 C 1.39415 * 119.91311 * 41.63653 * 10 9 8 12 12 C 1.38362 * 120.46495 * 179.97438 * 11 10 9 13 13 C 1.38020 * 120.28875 * 0.04831 * 12 11 10 14 14 F 1.35105 * 120.08602 * 179.97438 * 13 12 11 15 15 C 1.41010 * 119.81931 * 359.97370 * 13 12 11 16 16 C 1.41297 * 120.22511 * 179.72391 * 15 13 12 17 17 H 1.08006 * 119.99748 * 330.68601 * 16 15 13 18 18 C 1.39919 * 120.00228 * 150.67920 * 16 15 13 19 19 N 1.30858 * 119.99589 * 350.84493 * 18 16 15 20 20 Si 1.86798 * 120.00216 * 170.83786 * 18 16 15 21 21 H 1.48500 * 109.46964 * 0.02562 * 20 18 16 22 22 H 1.48491 * 109.47015 * 120.00184 * 20 18 16 23 23 H 1.48502 * 109.47167 * 240.00540 * 20 18 16 24 24 C 1.38184 * 119.91599 * 221.68194 * 10 9 8 25 25 H 1.08999 * 109.47501 * 270.22959 * 1 2 3 26 26 H 1.08997 * 109.47103 * 30.23300 * 1 2 3 27 27 H 1.09002 * 109.47081 * 150.23121 * 1 2 3 28 28 H 1.07994 * 119.56174 * 0.02562 * 3 2 1 29 29 H 1.07998 * 120.47943 * 179.97438 * 7 5 4 30 30 H 0.97010 * 119.99534 * 187.54669 * 9 8 7 31 31 H 1.08000 * 119.77310 * 0.02673 * 11 10 9 32 32 H 1.07997 * 119.86075 * 180.02562 * 12 11 10 33 33 H 0.96999 * 119.99650 * 180.02562 * 19 18 16 34 34 H 1.07994 * 120.14310 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2053 1.1885 0.0000 4 7 3.5256 1.1986 -0.0056 5 6 4.2321 0.0814 -0.0064 6 9 5.5816 0.1452 -0.0128 7 6 3.6068 -1.1511 -0.0007 8 6 2.2140 -1.2031 0.0053 9 7 1.5451 -2.4242 0.0107 10 6 2.2628 -3.6138 0.1691 11 6 3.2991 -3.6820 1.0992 12 6 4.0163 -4.8534 1.2658 13 6 3.7134 -5.9684 0.5108 14 9 4.4167 -7.1100 0.6765 15 6 2.6679 -5.9128 -0.4338 16 6 2.3544 -7.0474 -1.2154 17 1 3.1256 -7.7612 -1.4648 18 6 1.0448 -7.2463 -1.6661 19 7 0.0770 -6.4866 -1.2204 20 14 0.6780 -8.5960 -2.9042 21 1 1.9351 -9.3084 -3.2468 22 1 -0.2904 -9.5564 -2.3170 23 1 0.0977 -7.9966 -4.1327 24 6 1.9436 -4.7185 -0.5972 25 1 -0.3634 0.0041 1.0276 26 1 -0.3633 0.8879 -0.5174 27 1 -0.3633 -0.8921 -0.5102 28 1 1.6653 2.1237 0.0004 29 1 4.1889 -2.0607 -0.0017 30 1 0.5812 -2.4497 -0.0955 31 1 3.5432 -2.8146 1.6946 32 1 4.8169 -4.8955 1.9894 33 1 -0.8309 -6.6247 -1.5326 34 1 1.1416 -4.6649 -1.3184 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212853683.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:05 Heat of formation + Delta-G solvation = -37.001164 kcal Electronic energy + Delta-G solvation = -22069.052607 eV Core-core repulsion = 18409.257113 eV Total energy + Delta-G solvation = -3659.795494 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.71766 -47.36852 -40.27760 -38.06526 -35.57664 -33.83085 -32.59753 -30.84242 -29.94721 -27.85545 -26.82387 -25.60598 -23.20711 -22.23495 -21.33846 -20.58330 -18.23830 -17.94547 -16.97222 -16.30369 -15.85918 -15.72591 -15.34691 -15.09127 -14.92458 -14.56896 -14.15592 -13.93640 -13.79295 -13.25505 -13.06181 -12.82291 -12.50213 -12.42342 -12.17954 -12.03532 -11.72390 -11.60766 -11.39568 -11.22924 -10.89890 -10.48331 -10.30271 -9.78984 -9.49730 -9.44219 -8.68470 -8.28778 -7.77139 -7.09886 -6.78604 -4.66573 1.15600 1.47834 2.43265 2.55896 2.95958 2.98299 3.02234 3.51368 3.77140 3.83415 3.92536 4.33542 4.73755 4.90805 5.00898 5.18776 5.36939 5.58655 5.61472 5.71784 5.76786 5.87081 5.92488 6.05272 6.19930 6.23990 6.59003 6.66154 6.81599 6.92230 6.97958 7.27442 7.33091 7.55257 7.73001 7.93676 7.94492 7.96168 8.32257 8.52849 8.58629 9.94727 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.018593 B = 0.004722 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.594478 B = 5927.850811 C = 6911.642120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.230 4.230 3 C 0.165 3.835 4 N -0.560 5.560 5 C 0.331 3.669 6 F -0.118 7.118 7 C -0.262 4.262 8 C 0.279 3.721 9 N -0.656 5.656 10 C 0.142 3.858 11 C -0.236 4.236 12 C -0.106 4.106 13 C -0.028 4.028 14 F -0.160 7.160 15 C 0.100 3.900 16 C -0.448 4.448 17 H 0.086 0.914 18 C 0.074 3.926 19 N -0.797 5.797 20 Si 0.918 3.082 21 H -0.258 1.258 22 H -0.272 1.272 23 H -0.271 1.271 24 C -0.156 4.156 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.160 0.840 29 H 0.161 0.839 30 H 0.410 0.590 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.283 0.717 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.300 8.791 0.600 9.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.237 4.237 3 C 0.009 3.991 4 N -0.278 5.278 5 C 0.179 3.821 6 F -0.097 7.097 7 C -0.288 4.288 8 C 0.165 3.835 9 N -0.276 5.276 10 C 0.049 3.951 11 C -0.257 4.257 12 C -0.126 4.126 13 C -0.049 4.049 14 F -0.139 7.139 15 C 0.096 3.904 16 C -0.477 4.477 17 H 0.104 0.896 18 C -0.144 4.144 19 N -0.423 5.423 20 Si 0.742 3.258 21 H -0.182 1.182 22 H -0.197 1.197 23 H -0.196 1.196 24 C -0.177 4.177 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.177 0.823 29 H 0.178 0.822 30 H 0.248 0.752 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.094 0.906 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.941 9.402 0.595 9.619 hybrid contribution -0.676 -1.580 -0.442 1.774 sum -2.617 7.822 0.153 8.250 Atomic orbital electron populations 1.20481 0.90098 1.02669 1.02236 1.20367 0.97495 0.92323 1.13540 1.21964 0.87479 0.96918 0.92766 1.67000 1.09155 1.30309 1.21321 1.17775 0.78218 0.89494 0.96620 1.91584 1.27803 1.97014 1.93279 1.21696 0.94301 0.98977 1.13835 1.17646 0.90736 0.85979 0.89137 1.42232 1.09246 1.01695 1.74420 1.17578 0.95310 0.85126 0.97110 1.20130 1.02891 0.98161 1.04516 1.20362 1.00234 0.92245 0.99743 1.17946 1.00622 0.82739 1.03561 1.91291 1.77996 1.49507 1.95154 1.17424 0.89599 0.93237 0.90158 1.19584 0.94964 1.06243 1.26900 0.89634 1.25924 0.95752 0.97255 0.95474 1.69759 1.01528 1.35358 1.35626 0.86084 0.79580 0.80305 0.79858 1.18182 1.19699 1.19568 1.21061 1.04825 0.90571 1.01279 0.91315 0.91161 0.91954 0.82250 0.82177 0.75203 0.87604 0.87427 0.90622 0.84826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.96 9.69 36.01 0.35 -0.61 16 2 C -0.23 -3.02 5.91 -104.28 -0.62 -3.64 16 3 C 0.16 2.14 10.85 -17.61 -0.19 1.95 16 4 N -0.56 -8.90 10.37 -13.69 -0.14 -9.05 16 5 C 0.33 5.54 8.40 -17.41 -0.15 5.39 16 6 F -0.12 -1.98 17.29 2.25 0.04 -1.94 16 7 C -0.26 -4.44 8.07 -39.17 -0.32 -4.75 16 8 C 0.28 4.44 6.43 -83.59 -0.54 3.91 16 9 N -0.66 -11.05 5.39 -8.30 -0.04 -11.10 16 10 C 0.14 2.89 5.89 -83.79 -0.49 2.39 16 11 C -0.24 -4.74 7.41 -39.10 -0.29 -5.03 16 12 C -0.11 -2.25 10.00 -39.62 -0.40 -2.64 16 13 C -0.03 -0.67 7.31 -38.61 -0.28 -0.96 16 14 F -0.16 -3.87 16.76 2.25 0.04 -3.83 16 15 C 0.10 2.49 5.55 -106.78 -0.59 1.90 16 16 C -0.45 -11.29 8.75 -37.79 -0.33 -11.62 16 17 H 0.09 2.15 7.77 -52.48 -0.41 1.74 16 18 C 0.07 1.72 5.28 -17.34 -0.09 1.63 16 19 N -0.80 -18.76 10.81 55.55 0.60 -18.15 16 20 Si 0.92 17.69 29.57 -169.99 -5.03 12.66 16 21 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 22 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 23 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 24 C -0.16 -3.59 8.57 -38.70 -0.33 -3.92 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 27 H 0.06 0.62 6.57 -51.93 -0.34 0.28 16 28 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 29 H 0.16 2.89 5.49 -52.49 -0.29 2.60 16 30 H 0.41 6.16 6.94 -40.82 -0.28 5.87 16 31 H 0.11 1.97 6.63 -52.49 -0.35 1.62 16 32 H 0.11 2.02 8.06 -52.49 -0.42 1.59 16 33 H 0.28 6.01 8.30 -40.82 -0.34 5.68 16 34 H 0.13 3.16 6.21 -52.49 -0.33 2.83 16 LS Contribution 299.87 15.07 4.52 4.52 Total: -1.00 -26.22 299.87 -7.10 -33.33 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -2.82 Total: 9.56 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -4.27 Total: -16.00 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.41 Total: -38.30 kcal Atomic # 9 Polarization: -5.84 SS G_CDS: 0.08 Total: -5.77 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.66 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -26.22 -7.10 -33.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212853683.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.676 kcal (2) G-P(sol) polarization free energy of solvation -26.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds