Wall clock time and date at job start Tue Mar 31 2020 07:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37845 * 120.43598 * 2 1 4 4 N 1.32031 * 120.87568 * 180.28562 * 3 2 1 5 5 C 1.32189 * 121.87156 * 359.73895 * 4 3 2 6 6 F 1.35103 * 119.60518 * 179.97438 * 5 4 3 7 7 C 1.38210 * 120.78410 * 359.97438 * 5 4 3 8 8 C 1.39378 * 119.04216 * 0.02562 * 7 5 4 9 9 N 1.39234 * 120.84789 * 179.97438 * 8 7 5 10 10 C 1.39830 * 120.00286 * 7.55034 * 9 8 7 11 11 C 1.39415 * 119.91311 * 41.63653 * 10 9 8 12 12 C 1.38362 * 120.46495 * 179.97438 * 11 10 9 13 13 C 1.38020 * 120.28875 * 0.04831 * 12 11 10 14 14 F 1.35105 * 120.08602 * 179.97438 * 13 12 11 15 15 C 1.41010 * 119.81931 * 359.97370 * 13 12 11 16 16 C 1.41297 * 120.22511 * 179.72391 * 15 13 12 17 17 H 1.08006 * 119.99748 * 330.68601 * 16 15 13 18 18 C 1.39919 * 120.00228 * 150.67920 * 16 15 13 19 19 N 1.30858 * 119.99589 * 350.84493 * 18 16 15 20 20 Si 1.86798 * 120.00216 * 170.83786 * 18 16 15 21 21 H 1.48500 * 109.46964 * 0.02562 * 20 18 16 22 22 H 1.48491 * 109.47015 * 120.00184 * 20 18 16 23 23 H 1.48502 * 109.47167 * 240.00540 * 20 18 16 24 24 C 1.38184 * 119.91599 * 221.68194 * 10 9 8 25 25 H 1.08999 * 109.47501 * 270.22959 * 1 2 3 26 26 H 1.08997 * 109.47103 * 30.23300 * 1 2 3 27 27 H 1.09002 * 109.47081 * 150.23121 * 1 2 3 28 28 H 1.07994 * 119.56174 * 0.02562 * 3 2 1 29 29 H 1.07998 * 120.47943 * 179.97438 * 7 5 4 30 30 H 0.97010 * 119.99534 * 187.54669 * 9 8 7 31 31 H 1.08000 * 119.77310 * 0.02673 * 11 10 9 32 32 H 1.07997 * 119.86075 * 180.02562 * 12 11 10 33 33 H 0.96999 * 119.99650 * 180.02562 * 19 18 16 34 34 H 1.07994 * 120.14310 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2053 1.1885 0.0000 4 7 3.5256 1.1986 -0.0056 5 6 4.2321 0.0814 -0.0064 6 9 5.5816 0.1452 -0.0128 7 6 3.6068 -1.1511 -0.0007 8 6 2.2140 -1.2031 0.0053 9 7 1.5451 -2.4242 0.0107 10 6 2.2628 -3.6138 0.1691 11 6 3.2991 -3.6820 1.0992 12 6 4.0163 -4.8534 1.2658 13 6 3.7134 -5.9684 0.5108 14 9 4.4167 -7.1100 0.6765 15 6 2.6679 -5.9128 -0.4338 16 6 2.3544 -7.0474 -1.2154 17 1 3.1256 -7.7612 -1.4648 18 6 1.0448 -7.2463 -1.6661 19 7 0.0770 -6.4866 -1.2204 20 14 0.6780 -8.5960 -2.9042 21 1 1.9351 -9.3084 -3.2468 22 1 -0.2904 -9.5564 -2.3170 23 1 0.0977 -7.9966 -4.1327 24 6 1.9436 -4.7185 -0.5972 25 1 -0.3634 0.0041 1.0276 26 1 -0.3633 0.8879 -0.5174 27 1 -0.3633 -0.8921 -0.5102 28 1 1.6653 2.1237 0.0004 29 1 4.1889 -2.0607 -0.0017 30 1 0.5812 -2.4497 -0.0955 31 1 3.5432 -2.8146 1.6946 32 1 4.8169 -4.8955 1.9894 33 1 -0.8309 -6.6247 -1.5326 34 1 1.1416 -4.6649 -1.3184 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212853683.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:04 Heat of formation + Delta-G solvation = -50.248487 kcal Electronic energy + Delta-G solvation = -22069.627054 eV Core-core repulsion = 18409.257113 eV Total energy + Delta-G solvation = -3660.369941 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.00186 -49.22060 -41.53316 -39.62659 -37.06056 -35.49060 -33.74997 -32.22476 -31.66558 -29.39611 -27.85786 -27.36179 -24.50444 -23.71995 -22.75671 -22.19149 -19.69398 -19.36737 -18.47200 -18.06770 -17.37681 -17.05695 -16.82798 -16.53654 -16.24818 -16.12382 -15.96292 -15.04556 -15.03770 -14.62342 -14.49645 -14.43241 -13.97917 -13.74829 -13.44852 -13.31609 -13.22463 -12.95671 -12.78995 -12.72779 -12.53780 -12.06479 -11.95241 -11.50823 -11.19437 -10.65344 -9.96493 -9.68063 -9.53456 -8.79258 -8.35908 -6.52104 -0.02115 0.17387 0.76837 0.85282 1.37505 1.44381 1.51266 2.17057 2.17902 2.55431 2.68503 2.72759 3.39213 3.63462 3.81588 3.96416 3.97119 4.18270 4.34216 4.47738 4.53938 4.68221 4.81771 4.86370 4.90425 4.95657 5.07320 5.17249 5.24677 5.31907 5.55438 5.61855 5.73063 5.87543 5.93546 6.22710 6.54149 6.59352 6.72741 6.77754 6.81409 8.23411 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.018593 B = 0.004722 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.594478 B = 5927.850811 C = 6911.642120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.211 4.211 3 C 0.168 3.832 4 N -0.570 5.570 5 C 0.316 3.684 6 F -0.124 7.124 7 C -0.273 4.273 8 C 0.262 3.738 9 N -0.654 5.654 10 C 0.157 3.843 11 C -0.226 4.226 12 C -0.101 4.101 13 C -0.063 4.063 14 F -0.169 7.169 15 C 0.074 3.926 16 C -0.488 4.488 17 H 0.071 0.929 18 C 0.040 3.960 19 N -0.818 5.818 20 Si 0.984 3.016 21 H -0.265 1.265 22 H -0.263 1.263 23 H -0.258 1.258 24 C -0.171 4.171 25 H 0.082 0.918 26 H 0.099 0.901 27 H 0.060 0.940 28 H 0.205 0.795 29 H 0.144 0.856 30 H 0.419 0.581 31 H 0.125 0.875 32 H 0.132 0.868 33 H 0.293 0.707 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.956 10.871 0.625 11.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.218 4.218 3 C 0.013 3.987 4 N -0.288 5.288 5 C 0.165 3.835 6 F -0.103 7.103 7 C -0.300 4.300 8 C 0.149 3.851 9 N -0.276 5.276 10 C 0.063 3.937 11 C -0.247 4.247 12 C -0.121 4.121 13 C -0.084 4.084 14 F -0.148 7.148 15 C 0.070 3.930 16 C -0.518 4.518 17 H 0.089 0.911 18 C -0.176 4.176 19 N -0.444 5.444 20 Si 0.805 3.195 21 H -0.189 1.189 22 H -0.188 1.188 23 H -0.183 1.183 24 C -0.194 4.194 25 H 0.101 0.899 26 H 0.118 0.882 27 H 0.078 0.922 28 H 0.221 0.779 29 H 0.161 0.839 30 H 0.259 0.741 31 H 0.143 0.857 32 H 0.150 0.850 33 H 0.104 0.896 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.605 11.531 0.633 12.098 hybrid contribution -0.166 -1.997 -0.382 2.040 sum -3.770 9.533 0.251 10.255 Atomic orbital electron populations 1.20619 0.87337 1.04062 1.03554 1.20761 0.99358 0.91028 1.10692 1.22729 0.86542 0.98568 0.90910 1.67091 1.10609 1.29821 1.21277 1.17845 0.78190 0.89787 0.97696 1.91561 1.28292 1.97056 1.93434 1.21601 0.94908 0.98515 1.14928 1.17849 0.90546 0.86443 0.90222 1.42052 1.09480 1.00924 1.75170 1.17554 0.94797 0.85703 0.95643 1.20374 1.02158 0.98252 1.03957 1.20646 1.00563 0.91572 0.99304 1.18244 1.01575 0.83525 1.05036 1.91249 1.78178 1.50092 1.95306 1.17760 0.90505 0.94029 0.90696 1.19708 0.95889 1.06924 1.29244 0.91108 1.26641 0.94909 0.99352 0.96676 1.69773 1.02063 1.36360 1.36165 0.85105 0.79044 0.77552 0.77784 1.18886 1.18807 1.18256 1.20975 1.05081 0.91128 1.02169 0.89895 0.88229 0.92153 0.77894 0.83877 0.74103 0.85677 0.84982 0.89630 0.85790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.52 9.69 71.24 0.69 -0.83 16 2 C -0.21 -4.83 5.91 -19.64 -0.12 -4.95 16 3 C 0.17 3.71 10.85 84.57 0.92 4.62 16 4 N -0.57 -16.73 10.37 -197.23 -2.05 -18.78 16 5 C 0.32 10.27 8.40 84.63 0.71 10.98 16 6 F -0.12 -4.13 17.29 44.97 0.78 -3.36 16 7 C -0.27 -9.03 8.07 22.54 0.18 -8.85 16 8 C 0.26 7.85 6.43 38.56 0.25 8.10 16 9 N -0.65 -21.23 5.39 -180.17 -0.97 -22.20 16 10 C 0.16 6.40 5.89 38.14 0.22 6.62 16 11 C -0.23 -8.98 7.41 22.58 0.17 -8.81 16 12 C -0.10 -4.31 10.00 22.25 0.22 -4.08 16 13 C -0.06 -3.14 7.31 22.90 0.17 -2.97 16 14 F -0.17 -8.49 16.76 44.97 0.75 -7.74 16 15 C 0.07 3.84 5.55 -21.26 -0.12 3.72 16 16 C -0.49 -25.78 8.75 23.43 0.21 -25.58 16 17 H 0.07 3.78 7.77 -2.91 -0.02 3.76 16 18 C 0.04 1.90 5.28 85.25 0.45 2.35 16 19 N -0.82 -38.98 10.81 21.82 0.24 -38.75 16 20 Si 0.98 36.62 29.57 68.60 2.03 38.65 16 21 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 22 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 23 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 24 C -0.17 -8.11 8.57 22.84 0.20 -7.92 16 25 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.10 1.01 8.09 -2.39 -0.02 0.99 16 27 H 0.06 1.00 6.57 -2.39 -0.02 0.98 16 28 H 0.20 2.65 8.06 -2.91 -0.02 2.62 16 29 H 0.14 5.18 5.49 -2.91 -0.02 5.17 16 30 H 0.42 11.94 6.94 -92.70 -0.64 11.30 16 31 H 0.13 4.49 6.63 -2.91 -0.02 4.47 16 32 H 0.13 4.84 8.06 -2.91 -0.02 4.82 16 33 H 0.29 12.41 8.30 -92.71 -0.77 11.65 16 34 H 0.12 6.03 6.21 -2.91 -0.02 6.01 16 Total: -1.00 -58.64 299.87 5.46 -53.19 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 0.53 Total: 26.59 kcal Atomic # 6 Polarization: -31.75 SS G_CDS: 4.15 Total: -27.60 kcal Atomic # 7 Polarization: -76.95 SS G_CDS: -2.78 Total: -79.73 kcal Atomic # 9 Polarization: -12.63 SS G_CDS: 1.53 Total: -11.09 kcal Atomic # 14 Polarization: 36.62 SS G_CDS: 2.03 Total: 38.65 kcal Total: -58.64 5.46 -53.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212853683.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.940 kcal (2) G-P(sol) polarization free energy of solvation -58.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds