Wall clock time and date at job start Tue Mar 31 2020 06:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30856 * 1 3 3 Si 1.86797 * 120.00382 * 2 1 4 4 H 1.48501 * 109.47337 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47085 * 300.00031 * 3 2 1 6 6 H 1.48503 * 109.46790 * 59.99804 * 3 2 1 7 7 C 1.39914 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00093 * 198.11321 * 7 2 1 9 9 C 1.41293 * 119.99863 * 18.10847 * 7 2 1 10 10 C 1.40617 * 120.22960 * 24.55390 * 9 7 2 11 11 C 1.38195 * 119.70955 * 180.24334 * 10 9 7 12 12 N 1.39771 * 119.91803 * 179.73236 * 11 10 9 13 13 C 1.39993 * 119.99847 * 186.40602 * 12 11 10 14 14 C 1.38715 * 120.08593 * 255.07978 * 13 12 11 15 15 C 1.38416 * 119.97213 * 179.72192 * 14 13 12 16 16 F 1.35100 * 119.92665 * 180.27057 * 15 14 13 17 17 C 1.38466 * 120.14898 * 0.55281 * 15 14 13 18 18 C 1.38276 * 120.16723 * 359.72155 * 17 15 14 19 19 C 1.38637 * 120.03024 * 0.02562 * 18 17 15 20 20 N 1.40117 * 120.07379 * 179.97438 * 19 18 17 21 21 C 1.39447 * 120.16206 * 359.46476 * 11 10 9 22 22 C 1.38343 * 120.46288 * 0.27320 * 21 11 10 23 23 C 1.38022 * 120.29596 * 359.97438 * 22 21 11 24 24 F 1.35092 * 120.09065 * 179.97438 * 23 22 21 25 25 H 0.96999 * 120.00049 * 0.02562 * 1 2 3 26 26 H 1.08007 * 120.14416 * 0.02562 * 10 9 7 27 27 H 0.97001 * 120.00116 * 6.68878 * 12 11 10 28 28 H 1.07998 * 120.00987 * 359.97438 * 14 13 12 29 29 H 1.08000 * 119.90962 * 179.70003 * 17 15 14 30 30 H 1.08000 * 119.98229 * 179.97438 * 18 17 15 31 31 H 0.97000 * 119.99785 * 180.02562 * 20 19 18 32 32 H 0.97000 * 120.00361 * 0.02562 * 20 19 18 33 33 H 1.08004 * 119.76336 * 180.29066 * 21 11 10 34 34 H 1.08004 * 119.85530 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 3.7027 1.3463 0.0006 5 1 1.8839 2.3964 -1.2126 6 1 1.8839 2.3963 1.2125 7 6 2.0081 -1.2117 -0.0005 8 1 3.0479 -1.2351 0.2902 9 6 1.3540 -2.4048 -0.3814 10 6 0.2289 -2.3576 -1.2236 11 6 -0.4056 -3.5308 -1.5852 12 7 -1.5276 -3.4885 -2.4176 13 6 -2.2513 -4.6585 -2.6768 14 6 -2.1310 -5.2930 -3.9045 15 6 -2.8432 -6.4529 -4.1562 16 9 -2.7211 -7.0730 -5.3503 17 6 -3.6850 -6.9758 -3.1891 18 6 -3.8138 -6.3451 -1.9653 19 6 -3.0998 -5.1859 -1.7036 20 7 -3.2301 -4.5458 -0.4640 21 6 0.0742 -4.7571 -1.1264 22 6 1.1839 -4.8120 -0.3020 23 6 1.8291 -3.6517 0.0752 24 9 2.9120 -3.7101 0.8808 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1399 -1.4083 -1.5833 27 1 -1.8025 -2.6493 -2.8189 28 1 -1.4788 -4.8843 -4.6621 29 1 -4.2425 -7.8783 -3.3914 30 1 -4.4715 -6.7554 -1.2133 31 1 -2.7303 -3.7346 -0.2822 32 1 -3.8199 -4.9139 0.2123 33 1 -0.4238 -5.6704 -1.4169 34 1 1.5469 -5.7671 0.0480 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214216856.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:05 Heat of formation + Delta-G solvation = -45.513366 kcal Electronic energy + Delta-G solvation = -22092.568002 eV Core-core repulsion = 18432.403391 eV Total energy + Delta-G solvation = -3660.164611 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.53302 -47.13078 -39.60236 -37.45989 -34.73974 -33.92619 -33.39356 -30.12215 -29.77337 -28.16209 -26.64701 -25.34409 -22.76196 -21.83222 -21.42457 -20.19650 -17.85399 -17.19008 -16.99952 -16.74432 -16.16856 -15.90932 -15.28066 -15.13123 -14.93728 -14.77237 -14.07654 -13.92633 -13.61158 -13.18234 -13.07465 -12.69021 -12.61457 -12.42892 -11.84961 -11.68462 -11.52780 -11.35590 -11.10661 -11.04240 -10.57810 -10.21269 -10.18384 -9.53980 -9.45966 -9.06865 -8.66836 -7.62382 -7.23205 -6.93929 -6.38052 -4.48345 1.35552 1.57379 2.66117 2.83850 3.02485 3.08626 3.13156 3.78563 3.86143 3.98276 4.10781 4.49226 4.67328 4.99044 5.10896 5.45145 5.51015 5.66554 5.96033 5.98872 6.09207 6.18051 6.35570 6.46902 6.49504 6.80201 6.88839 6.95665 7.08840 7.16734 7.52287 7.57028 7.69543 7.83148 7.96594 8.01328 8.22934 8.46034 8.58255 8.70074 8.83891 10.04440 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.021743 B = 0.004335 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.489477 B = 6457.087942 C = 6847.524291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.079 3.921 3 Si 0.909 3.091 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.452 4.452 8 H 0.083 0.917 9 C 0.116 3.884 10 C -0.209 4.209 11 C 0.202 3.798 12 N -0.707 5.707 13 C 0.121 3.879 14 C -0.114 4.114 15 C 0.035 3.965 16 F -0.150 7.150 17 C -0.111 4.111 18 C -0.176 4.176 19 C 0.212 3.788 20 N -0.862 5.862 21 C -0.262 4.262 22 C -0.092 4.092 23 C -0.058 4.058 24 F -0.167 7.167 25 H 0.281 0.719 26 H 0.126 0.874 27 H 0.400 0.600 28 H 0.133 0.867 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.409 0.591 32 H 0.394 0.606 33 H 0.096 0.904 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.520 -5.868 -3.785 11.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.481 4.481 8 H 0.101 0.899 9 C 0.112 3.888 10 C -0.233 4.233 11 C 0.105 3.895 12 N -0.338 5.338 13 C 0.022 3.978 14 C -0.136 4.136 15 C 0.013 3.987 16 F -0.129 7.129 17 C -0.131 4.131 18 C -0.200 4.200 19 C 0.103 3.897 20 N -0.400 5.400 21 C -0.284 4.284 22 C -0.112 4.112 23 C -0.079 4.079 24 F -0.146 7.146 25 H 0.091 0.909 26 H 0.144 0.856 27 H 0.237 0.763 28 H 0.151 0.849 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.240 0.760 32 H 0.222 0.778 33 H 0.114 0.886 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.676 -5.861 -3.759 11.124 hybrid contribution 0.377 1.026 0.159 1.104 sum -8.299 -4.835 -3.599 10.257 Atomic orbital electron populations 1.69837 1.07588 1.29237 1.34524 1.25886 0.94742 1.01375 0.91965 0.86236 0.81227 0.80605 0.78604 1.18219 1.19603 1.19893 1.19546 0.98570 0.90997 1.39013 0.89884 1.17304 0.91380 0.90735 0.89395 1.20552 1.01722 0.95412 1.05576 1.17651 0.86495 0.94181 0.91137 1.41714 1.29794 1.07089 1.55234 1.16650 0.96650 0.92029 0.92466 1.21245 0.99619 0.94177 0.98550 1.17216 1.03549 0.95167 0.82752 1.91438 1.95422 1.82201 1.43887 1.20774 0.98904 1.00529 0.92894 1.20251 1.04854 0.96781 0.98071 1.18231 0.92480 0.91854 0.87105 1.42571 1.52187 1.31676 1.13595 1.19715 1.02732 0.94856 1.11136 1.20261 0.96316 0.95581 0.99063 1.17795 0.91991 0.94691 1.03405 1.91250 1.53713 1.97280 1.72396 0.90862 0.85612 0.76340 0.84897 0.85286 0.85442 0.75973 0.77817 0.88608 0.88287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.96 10.98 55.55 0.61 -18.35 16 2 C 0.08 1.90 5.13 -17.34 -0.09 1.81 16 3 Si 0.91 18.11 29.60 -169.99 -5.03 13.08 16 4 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 5 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 6 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 7 C -0.45 -11.84 8.78 -37.79 -0.33 -12.17 16 8 H 0.08 2.18 7.73 -52.49 -0.41 1.78 16 9 C 0.12 3.01 5.58 -106.78 -0.60 2.42 16 10 C -0.21 -4.96 8.53 -38.70 -0.33 -5.29 16 11 C 0.20 4.22 5.83 -83.80 -0.49 3.73 16 12 N -0.71 -12.18 4.78 -8.29 -0.04 -12.22 16 13 C 0.12 1.90 4.54 -83.49 -0.38 1.52 16 14 C -0.11 -1.72 9.94 -39.34 -0.39 -2.11 16 15 C 0.03 0.50 7.29 -39.43 -0.29 0.21 16 16 F -0.15 -2.19 17.26 2.25 0.04 -2.15 16 17 C -0.11 -1.38 10.02 -39.48 -0.40 -1.77 16 18 C -0.18 -2.16 9.89 -39.42 -0.39 -2.55 16 19 C 0.21 3.04 6.33 -83.46 -0.53 2.51 16 20 N -0.86 -11.61 9.05 32.56 0.29 -11.32 16 21 C -0.26 -5.59 9.20 -39.09 -0.36 -5.95 16 22 C -0.09 -2.09 10.00 -39.62 -0.40 -2.49 16 23 C -0.06 -1.46 7.31 -38.60 -0.28 -1.75 16 24 F -0.17 -4.26 16.70 2.25 0.04 -4.22 16 25 H 0.28 6.12 8.30 -40.82 -0.34 5.78 16 26 H 0.13 3.04 6.17 -52.48 -0.32 2.72 16 27 H 0.40 6.43 8.84 -40.82 -0.36 6.07 16 28 H 0.13 1.94 8.06 -52.49 -0.42 1.51 16 29 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 31 H 0.41 6.41 7.50 -40.82 -0.31 6.10 16 32 H 0.39 4.19 8.85 -40.82 -0.36 3.83 16 33 H 0.10 1.96 6.78 -52.48 -0.36 1.60 16 34 H 0.10 2.03 8.06 -52.48 -0.42 1.60 16 LS Contribution 304.46 15.07 4.59 4.59 Total: -1.00 -26.74 304.46 -7.68 -34.42 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -2.94 Total: 18.04 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -5.24 Total: -21.88 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.86 Total: -41.88 kcal Atomic # 9 Polarization: -6.45 SS G_CDS: 0.08 Total: -6.37 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.08 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -26.74 -7.68 -34.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214216856.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.090 kcal (2) G-P(sol) polarization free energy of solvation -26.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds