Wall clock time and date at job start Tue Mar 31 2020 06:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30856 * 1 3 3 Si 1.86797 * 120.00382 * 2 1 4 4 H 1.48501 * 109.47337 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47085 * 300.00031 * 3 2 1 6 6 H 1.48503 * 109.46790 * 59.99804 * 3 2 1 7 7 C 1.39914 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00093 * 198.11321 * 7 2 1 9 9 C 1.41293 * 119.99863 * 18.10847 * 7 2 1 10 10 C 1.40617 * 120.22960 * 24.55390 * 9 7 2 11 11 C 1.38195 * 119.70955 * 180.24334 * 10 9 7 12 12 N 1.39771 * 119.91803 * 179.73236 * 11 10 9 13 13 C 1.39993 * 119.99847 * 186.40602 * 12 11 10 14 14 C 1.38715 * 120.08593 * 255.07978 * 13 12 11 15 15 C 1.38416 * 119.97213 * 179.72192 * 14 13 12 16 16 F 1.35100 * 119.92665 * 180.27057 * 15 14 13 17 17 C 1.38466 * 120.14898 * 0.55281 * 15 14 13 18 18 C 1.38276 * 120.16723 * 359.72155 * 17 15 14 19 19 C 1.38637 * 120.03024 * 0.02562 * 18 17 15 20 20 N 1.40117 * 120.07379 * 179.97438 * 19 18 17 21 21 C 1.39447 * 120.16206 * 359.46476 * 11 10 9 22 22 C 1.38343 * 120.46288 * 0.27320 * 21 11 10 23 23 C 1.38022 * 120.29596 * 359.97438 * 22 21 11 24 24 F 1.35092 * 120.09065 * 179.97438 * 23 22 21 25 25 H 0.96999 * 120.00049 * 0.02562 * 1 2 3 26 26 H 1.08007 * 120.14416 * 0.02562 * 10 9 7 27 27 H 0.97001 * 120.00116 * 6.68878 * 12 11 10 28 28 H 1.07998 * 120.00987 * 359.97438 * 14 13 12 29 29 H 1.08000 * 119.90962 * 179.70003 * 17 15 14 30 30 H 1.08000 * 119.98229 * 179.97438 * 18 17 15 31 31 H 0.97000 * 119.99785 * 180.02562 * 20 19 18 32 32 H 0.97000 * 120.00361 * 0.02562 * 20 19 18 33 33 H 1.08004 * 119.76336 * 180.29066 * 21 11 10 34 34 H 1.08004 * 119.85530 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 3.7027 1.3463 0.0006 5 1 1.8839 2.3964 -1.2126 6 1 1.8839 2.3963 1.2125 7 6 2.0081 -1.2117 -0.0005 8 1 3.0479 -1.2351 0.2902 9 6 1.3540 -2.4048 -0.3814 10 6 0.2289 -2.3576 -1.2236 11 6 -0.4056 -3.5308 -1.5852 12 7 -1.5276 -3.4885 -2.4176 13 6 -2.2513 -4.6585 -2.6768 14 6 -2.1310 -5.2930 -3.9045 15 6 -2.8432 -6.4529 -4.1562 16 9 -2.7211 -7.0730 -5.3503 17 6 -3.6850 -6.9758 -3.1891 18 6 -3.8138 -6.3451 -1.9653 19 6 -3.0998 -5.1859 -1.7036 20 7 -3.2301 -4.5458 -0.4640 21 6 0.0742 -4.7571 -1.1264 22 6 1.1839 -4.8120 -0.3020 23 6 1.8291 -3.6517 0.0752 24 9 2.9120 -3.7101 0.8808 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1399 -1.4083 -1.5833 27 1 -1.8025 -2.6493 -2.8189 28 1 -1.4788 -4.8843 -4.6621 29 1 -4.2425 -7.8783 -3.3914 30 1 -4.4715 -6.7554 -1.2133 31 1 -2.7303 -3.7346 -0.2822 32 1 -3.8199 -4.9139 0.2123 33 1 -0.4238 -5.6704 -1.4169 34 1 1.5469 -5.7671 0.0480 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214216856.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:03 Heat of formation + Delta-G solvation = -59.831638 kcal Electronic energy + Delta-G solvation = -22093.188889 eV Core-core repulsion = 18432.403391 eV Total energy + Delta-G solvation = -3660.785498 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -49.63841 -49.06618 -40.84789 -39.07454 -36.29862 -35.13535 -34.97230 -31.61674 -31.41259 -29.44308 -28.03454 -27.19444 -23.97406 -23.23258 -22.98990 -21.81302 -19.43968 -18.55347 -18.19150 -17.93572 -17.80342 -17.63621 -16.68433 -16.55902 -16.32240 -15.97404 -15.86792 -15.59008 -14.85711 -14.69429 -14.38517 -14.26552 -13.76042 -13.67665 -13.58242 -13.42116 -13.28003 -12.94607 -12.75707 -12.32510 -12.12895 -11.98029 -11.33855 -11.27891 -11.19298 -10.67895 -9.85544 -9.47758 -8.73902 -8.36772 -8.01013 -6.41115 0.26579 0.47983 0.91827 1.01715 1.38707 1.49441 1.53077 2.20471 2.54904 2.68204 2.77398 3.03376 3.57112 3.62360 3.93544 4.13689 4.16307 4.29824 4.45628 4.55378 4.72529 4.93303 5.04895 5.09068 5.15909 5.25256 5.32352 5.34637 5.43680 5.76840 5.80850 5.89694 6.03765 6.10418 6.40721 6.54707 6.76199 6.82062 6.94497 7.00655 7.08574 8.26611 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.021743 B = 0.004335 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.489477 B = 6457.087942 C = 6847.524291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.046 3.954 3 Si 0.978 3.022 4 H -0.266 1.266 5 H -0.258 1.258 6 H -0.263 1.263 7 C -0.494 4.494 8 H 0.066 0.934 9 C 0.092 3.908 10 C -0.225 4.225 11 C 0.223 3.777 12 N -0.695 5.695 13 C 0.089 3.911 14 C -0.120 4.120 15 C 0.022 3.978 16 F -0.155 7.155 17 C -0.098 4.098 18 C -0.165 4.165 19 C 0.206 3.794 20 N -0.860 5.860 21 C -0.255 4.255 22 C -0.087 4.087 23 C -0.100 4.100 24 F -0.177 7.177 25 H 0.291 0.709 26 H 0.117 0.883 27 H 0.405 0.595 28 H 0.129 0.871 29 H 0.160 0.840 30 H 0.161 0.839 31 H 0.399 0.601 32 H 0.408 0.592 33 H 0.112 0.888 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.434 -6.797 -4.151 13.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.171 4.171 3 Si 0.799 3.201 4 H -0.190 1.190 5 H -0.182 1.182 6 H -0.188 1.188 7 C -0.523 4.523 8 H 0.084 0.916 9 C 0.088 3.912 10 C -0.250 4.250 11 C 0.124 3.876 12 N -0.325 5.325 13 C -0.008 4.008 14 C -0.141 4.141 15 C 0.000 4.000 16 F -0.134 7.134 17 C -0.117 4.117 18 C -0.189 4.189 19 C 0.097 3.903 20 N -0.398 5.398 21 C -0.277 4.277 22 C -0.107 4.107 23 C -0.121 4.121 24 F -0.156 7.156 25 H 0.102 0.898 26 H 0.135 0.865 27 H 0.241 0.759 28 H 0.147 0.853 29 H 0.178 0.822 30 H 0.178 0.822 31 H 0.227 0.773 32 H 0.238 0.762 33 H 0.130 0.870 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.648 -6.826 -4.139 13.308 hybrid contribution 0.811 1.164 0.209 1.434 sum -9.836 -5.662 -3.930 12.010 Atomic orbital electron populations 1.69842 1.08512 1.30697 1.34008 1.26588 0.95571 1.03901 0.91057 0.85217 0.79250 0.76360 0.79288 1.19004 1.18236 1.18808 1.19662 0.98265 0.92692 1.41652 0.91592 1.17644 0.92370 0.91180 0.90023 1.20450 1.02071 0.96043 1.06388 1.17606 0.86654 0.93189 0.90170 1.41597 1.28653 1.08242 1.53971 1.16774 0.98215 0.92258 0.93591 1.21232 0.99930 0.94701 0.98232 1.17379 1.04275 0.95156 0.83185 1.91430 1.95520 1.82175 1.44238 1.21137 0.97583 1.00956 0.92011 1.20607 1.04111 0.95506 0.98651 1.18395 0.92547 0.92499 0.86874 1.42572 1.52174 1.31178 1.13859 1.19877 1.02130 0.95468 1.10267 1.20519 0.96057 0.95655 0.98438 1.18098 0.93050 0.95637 1.05275 1.91202 1.54258 1.97350 1.72831 0.89785 0.86523 0.75859 0.85305 0.82230 0.82190 0.77296 0.76189 0.86978 0.86133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.31 10.98 21.82 0.24 -39.07 16 2 C 0.05 2.24 5.13 85.24 0.44 2.68 16 3 Si 0.98 37.52 29.60 68.60 2.03 39.55 16 4 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 5 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 6 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 7 C -0.49 -27.00 8.78 23.43 0.21 -26.80 16 8 H 0.07 3.68 7.73 -2.91 -0.02 3.66 16 9 C 0.09 4.94 5.58 -21.26 -0.12 4.83 16 10 C -0.23 -10.97 8.53 22.84 0.19 -10.78 16 11 C 0.22 9.29 5.83 38.16 0.22 9.51 16 12 N -0.70 -23.49 4.78 -180.15 -0.86 -24.35 16 13 C 0.09 2.67 4.54 38.25 0.17 2.85 16 14 C -0.12 -3.42 9.94 22.43 0.22 -3.19 16 15 C 0.02 0.57 7.29 22.37 0.16 0.73 16 16 F -0.15 -4.18 17.26 44.97 0.78 -3.41 16 17 C -0.10 -2.02 10.02 22.33 0.22 -1.80 16 18 C -0.17 -3.38 9.89 22.37 0.22 -3.16 16 19 C 0.21 5.36 6.33 38.21 0.24 5.60 16 20 N -0.86 -21.32 9.05 -50.92 -0.46 -21.78 16 21 C -0.25 -10.63 9.20 22.59 0.21 -10.42 16 22 C -0.09 -3.93 10.00 22.24 0.22 -3.71 16 23 C -0.10 -5.19 7.31 22.90 0.17 -5.02 16 24 F -0.18 -9.38 16.70 44.97 0.75 -8.63 16 25 H 0.29 12.66 8.30 -92.71 -0.77 11.89 16 26 H 0.12 5.81 6.17 -2.91 -0.02 5.79 16 27 H 0.40 12.90 8.84 -92.71 -0.82 12.08 16 28 H 0.13 3.68 8.06 -2.91 -0.02 3.65 16 29 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 30 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 31 H 0.40 12.00 7.50 -92.71 -0.70 11.30 16 32 H 0.41 7.59 8.85 -92.71 -0.82 6.77 16 33 H 0.11 4.33 6.78 -2.91 -0.02 4.31 16 34 H 0.12 4.80 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -58.91 304.46 4.12 -54.79 By element: Atomic # 1 Polarization: 42.72 SS G_CDS: -1.14 Total: 41.59 kcal Atomic # 6 Polarization: -41.48 SS G_CDS: 2.79 Total: -38.69 kcal Atomic # 7 Polarization: -84.12 SS G_CDS: -1.08 Total: -85.20 kcal Atomic # 9 Polarization: -13.56 SS G_CDS: 1.53 Total: -12.03 kcal Atomic # 14 Polarization: 37.52 SS G_CDS: 2.03 Total: 39.55 kcal Total: -58.91 4.12 -54.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214216856.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.046 kcal (2) G-P(sol) polarization free energy of solvation -58.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds