Wall clock time and date at job start Tue Mar 31 2020 07:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38738 * 120.83329 * 2 1 4 4 F 1.35093 * 120.39941 * 0.04536 * 3 2 1 5 5 C 1.38483 * 119.19373 * 180.02562 * 3 2 1 6 6 N 1.31878 * 120.89544 * 0.02570 * 5 3 2 7 7 C 1.31768 * 121.82803 * 359.97438 * 6 5 3 8 8 C 1.38966 * 120.70698 * 0.02629 * 7 6 5 9 9 N 1.39731 * 120.48092 * 179.70585 * 8 7 6 10 10 C 1.39807 * 119.99576 * 259.74864 * 9 8 7 11 11 C 1.39426 * 119.91741 * 1.11806 * 10 9 8 12 12 C 1.38358 * 120.46533 * 179.97438 * 11 10 9 13 13 C 1.38009 * 120.28927 * 0.03413 * 12 11 10 14 14 F 1.35104 * 120.08676 * 179.97438 * 13 12 11 15 15 C 1.41014 * 119.82443 * 359.97438 * 13 12 11 16 16 C 1.41291 * 120.22753 * 179.97438 * 15 13 12 17 17 H 1.08001 * 120.00103 * 25.85302 * 16 15 13 18 18 C 1.39920 * 120.00252 * 205.85119 * 16 15 13 19 19 N 1.30853 * 119.99953 * 18.36992 * 18 16 15 20 20 Si 1.86806 * 120.00247 * 198.37522 * 18 16 15 21 21 H 1.48506 * 109.46823 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.46846 * 119.99765 * 20 18 16 23 23 H 1.48497 * 109.46638 * 240.00058 * 20 18 16 24 24 C 1.38183 * 119.91576 * 180.83585 * 10 9 8 25 25 H 1.08998 * 109.47404 * 269.95435 * 1 2 3 26 26 H 1.09005 * 109.46620 * 29.95805 * 1 2 3 27 27 H 1.08996 * 109.46797 * 149.95331 * 1 2 3 28 28 H 1.08003 * 119.55241 * 180.02562 * 5 3 2 29 29 H 1.07995 * 119.64721 * 180.02562 * 7 6 5 30 30 H 0.97000 * 120.00169 * 79.74344 * 9 8 7 31 31 H 1.08001 * 119.77163 * 359.97438 * 11 10 9 32 32 H 1.07998 * 119.85399 * 180.02562 * 12 11 10 33 33 H 0.97001 * 120.00458 * 179.97438 * 19 18 16 34 34 H 1.07998 * 120.14886 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2181 1.1913 0.0000 4 9 1.5679 2.3755 0.0009 5 6 3.6023 1.1517 -0.0005 6 7 4.2468 0.0011 -0.0016 7 6 3.6097 -1.1523 -0.0016 8 6 2.2207 -1.1957 -0.0011 9 7 1.5499 -2.4215 -0.0073 10 6 1.0247 -2.9248 -1.2013 11 6 1.1916 -2.2135 -2.3888 12 6 0.6770 -2.7013 -3.5769 13 6 -0.0087 -3.8988 -3.5989 14 9 -0.5099 -4.3710 -4.7612 15 6 -0.1847 -4.6281 -2.4049 16 6 -0.8858 -5.8548 -2.4175 17 1 -0.9262 -6.4444 -3.3215 18 6 -1.5276 -6.3058 -1.2589 19 7 -1.7940 -5.4675 -0.2901 20 14 -2.0040 -8.1046 -1.0950 21 1 -1.5953 -8.8385 -2.3197 22 1 -1.3210 -8.6919 0.0856 23 1 -3.4747 -8.2132 -0.9210 24 6 0.3466 -4.1288 -1.2024 25 1 -0.3634 -0.0008 1.0276 26 1 -0.3633 0.8904 -0.5132 27 1 -0.3633 -0.8895 -0.5145 28 1 4.1617 2.0756 -0.0001 29 1 4.1730 -2.0737 -0.0020 30 1 1.4487 -2.9232 0.8166 31 1 1.7263 -1.2751 -2.3813 32 1 0.8124 -2.1424 -4.4910 33 1 -2.2393 -5.7801 0.5130 34 1 0.2211 -4.6815 -0.2832 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216196055.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:01 Heat of formation + Delta-G solvation = -37.628496 kcal Electronic energy + Delta-G solvation = -22201.372737 eV Core-core repulsion = 18541.550039 eV Total energy + Delta-G solvation = -3659.822697 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.96860 -47.16835 -40.32748 -37.86334 -35.37076 -33.67544 -32.88165 -30.16758 -29.83477 -28.14519 -26.78983 -25.39862 -23.04570 -22.26664 -21.54657 -20.34689 -17.91516 -17.48161 -17.22462 -16.36375 -16.28633 -15.98081 -15.76649 -15.26867 -14.99142 -14.08910 -13.98633 -13.85952 -13.53473 -13.09119 -12.98187 -12.81803 -12.62900 -12.61864 -11.92275 -11.75278 -11.66845 -11.56077 -11.38773 -11.15521 -10.66954 -10.31159 -9.88116 -9.59143 -9.44560 -9.28541 -9.00494 -8.76128 -7.66973 -6.97787 -6.48750 -4.52231 0.90665 1.07842 2.61545 2.77795 3.01334 3.06745 3.09900 3.56779 3.74511 3.84348 4.15277 4.44270 4.49889 4.69131 4.75140 5.04587 5.40115 5.54041 5.65606 5.71683 5.86075 5.91293 6.02297 6.12266 6.34933 6.38462 6.52325 6.76955 6.83872 7.01361 7.09299 7.47132 7.48884 7.72737 7.81830 7.90505 8.14429 8.31573 8.50895 8.65985 8.77756 10.01952 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.022347 B = 0.004412 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.676769 B = 6345.507420 C = 6759.399778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.078 4.078 3 C 0.047 3.953 4 F -0.132 7.132 5 C 0.062 3.938 6 N -0.457 5.457 7 C 0.085 3.915 8 C 0.154 3.846 9 N -0.708 5.708 10 C 0.205 3.795 11 C -0.269 4.269 12 C -0.090 4.090 13 C -0.055 4.055 14 F -0.166 7.166 15 C 0.118 3.882 16 C -0.452 4.452 17 H 0.084 0.916 18 C 0.079 3.921 19 N -0.785 5.785 20 Si 0.909 3.091 21 H -0.258 1.258 22 H -0.271 1.271 23 H -0.273 1.273 24 C -0.204 4.204 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.094 0.906 28 H 0.164 0.836 29 H 0.164 0.836 30 H 0.406 0.594 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.282 0.718 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.253 7.511 4.753 10.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.089 4.089 3 C 0.025 3.975 4 F -0.111 7.111 5 C -0.096 4.096 6 N -0.165 5.165 7 C -0.074 4.074 8 C 0.057 3.943 9 N -0.341 5.341 10 C 0.109 3.891 11 C -0.292 4.292 12 C -0.110 4.110 13 C -0.075 4.075 14 F -0.145 7.145 15 C 0.114 3.886 16 C -0.481 4.481 17 H 0.102 0.898 18 C -0.140 4.140 19 N -0.410 5.410 20 Si 0.733 3.267 21 H -0.182 1.182 22 H -0.196 1.196 23 H -0.199 1.199 24 C -0.228 4.228 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.113 0.887 28 H 0.181 0.819 29 H 0.181 0.819 30 H 0.244 0.756 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.093 0.907 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.038 7.661 4.853 10.895 hybrid contribution -1.448 -0.669 0.259 1.616 sum 4.590 6.992 5.113 9.803 Atomic orbital electron populations 1.20743 0.88808 1.04705 1.03003 1.21049 0.98571 0.91491 0.97762 1.18665 0.91509 0.81129 1.06170 1.91484 1.81579 1.44011 1.93981 1.22805 0.89526 0.97683 0.99578 1.67704 1.39502 0.97680 1.11600 1.23369 0.91502 0.96341 0.96222 1.18206 0.90985 0.86459 0.98643 1.41702 1.63681 1.19348 1.09395 1.17546 0.94175 0.93388 0.83969 1.19658 1.15277 1.02765 0.91491 1.20248 0.98695 0.94904 0.97137 1.17790 1.10256 0.96952 0.82538 1.91261 1.86976 1.88969 1.47296 1.17304 0.90044 0.92066 0.89211 1.19547 1.27435 1.03608 0.97522 0.89772 1.25897 0.93612 0.99699 0.94758 1.69841 1.29223 1.35679 1.06231 0.86231 0.78713 0.82129 0.79592 1.18180 1.19567 1.19853 1.20474 1.06128 0.96709 0.99470 0.90570 0.91228 0.88748 0.81894 0.81906 0.75635 0.88999 0.88138 0.90747 0.85754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.69 9.67 36.01 0.35 -1.35 16 2 C -0.08 -1.15 5.50 -104.06 -0.57 -1.73 16 3 C 0.05 0.64 7.28 -39.31 -0.29 0.36 16 4 F -0.13 -1.76 16.61 2.25 0.04 -1.72 16 5 C 0.06 0.79 11.17 -17.44 -0.19 0.59 16 6 N -0.46 -6.37 10.35 -13.01 -0.13 -6.50 16 7 C 0.08 1.20 11.12 -17.31 -0.19 1.01 16 8 C 0.15 2.33 4.51 -83.61 -0.38 1.95 16 9 N -0.71 -11.71 4.83 -8.35 -0.04 -11.75 16 10 C 0.20 4.20 5.48 -83.80 -0.46 3.74 16 11 C -0.27 -5.64 8.94 -39.09 -0.35 -5.99 16 12 C -0.09 -2.01 10.00 -39.62 -0.40 -2.40 16 13 C -0.05 -1.36 7.31 -38.61 -0.28 -1.64 16 14 F -0.17 -4.17 16.72 2.25 0.04 -4.13 16 15 C 0.12 3.02 5.56 -106.78 -0.59 2.43 16 16 C -0.45 -11.69 8.76 -37.79 -0.33 -12.02 16 17 H 0.08 2.18 7.76 -52.49 -0.41 1.77 16 18 C 0.08 1.89 5.11 -17.34 -0.09 1.80 16 19 N -0.79 -18.86 11.10 55.55 0.62 -18.24 16 20 Si 0.91 17.89 29.60 -169.99 -5.03 12.85 16 21 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 22 H -0.27 -5.18 7.11 56.52 0.40 -4.77 16 23 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 24 C -0.20 -4.77 8.52 -38.70 -0.33 -5.10 16 25 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.07 0.95 7.73 -51.93 -0.40 0.55 16 27 H 0.09 1.63 6.25 -51.93 -0.32 1.31 16 28 H 0.16 1.56 8.06 -52.48 -0.42 1.14 16 29 H 0.16 2.08 8.06 -52.49 -0.42 1.65 16 30 H 0.41 6.11 8.83 -40.82 -0.36 5.75 16 31 H 0.09 1.82 6.70 -52.49 -0.35 1.47 16 32 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 33 H 0.28 6.11 8.30 -40.82 -0.34 5.77 16 34 H 0.12 2.95 6.30 -52.49 -0.33 2.62 16 LS Contribution 303.63 15.07 4.58 4.58 Total: -1.00 -26.42 303.63 -7.04 -33.47 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -3.00 Total: 9.80 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -4.10 Total: -18.36 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.44 Total: -36.49 kcal Atomic # 9 Polarization: -5.92 SS G_CDS: 0.08 Total: -5.85 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.85 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -26.42 -7.04 -33.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216196055.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.163 kcal (2) G-P(sol) polarization free energy of solvation -26.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds