Wall clock time and date at job start Tue Mar 31 2020 07:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38738 * 120.83329 * 2 1 4 4 F 1.35093 * 120.39941 * 0.04536 * 3 2 1 5 5 C 1.38483 * 119.19373 * 180.02562 * 3 2 1 6 6 N 1.31878 * 120.89544 * 0.02570 * 5 3 2 7 7 C 1.31768 * 121.82803 * 359.97438 * 6 5 3 8 8 C 1.38966 * 120.70698 * 0.02629 * 7 6 5 9 9 N 1.39731 * 120.48092 * 179.70585 * 8 7 6 10 10 C 1.39807 * 119.99576 * 259.74864 * 9 8 7 11 11 C 1.39426 * 119.91741 * 1.11806 * 10 9 8 12 12 C 1.38358 * 120.46533 * 179.97438 * 11 10 9 13 13 C 1.38009 * 120.28927 * 0.03413 * 12 11 10 14 14 F 1.35104 * 120.08676 * 179.97438 * 13 12 11 15 15 C 1.41014 * 119.82443 * 359.97438 * 13 12 11 16 16 C 1.41291 * 120.22753 * 179.97438 * 15 13 12 17 17 H 1.08001 * 120.00103 * 25.85302 * 16 15 13 18 18 C 1.39920 * 120.00252 * 205.85119 * 16 15 13 19 19 N 1.30853 * 119.99953 * 18.36992 * 18 16 15 20 20 Si 1.86806 * 120.00247 * 198.37522 * 18 16 15 21 21 H 1.48506 * 109.46823 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.46846 * 119.99765 * 20 18 16 23 23 H 1.48497 * 109.46638 * 240.00058 * 20 18 16 24 24 C 1.38183 * 119.91576 * 180.83585 * 10 9 8 25 25 H 1.08998 * 109.47404 * 269.95435 * 1 2 3 26 26 H 1.09005 * 109.46620 * 29.95805 * 1 2 3 27 27 H 1.08996 * 109.46797 * 149.95331 * 1 2 3 28 28 H 1.08003 * 119.55241 * 180.02562 * 5 3 2 29 29 H 1.07995 * 119.64721 * 180.02562 * 7 6 5 30 30 H 0.97000 * 120.00169 * 79.74344 * 9 8 7 31 31 H 1.08001 * 119.77163 * 359.97438 * 11 10 9 32 32 H 1.07998 * 119.85399 * 180.02562 * 12 11 10 33 33 H 0.97001 * 120.00458 * 179.97438 * 19 18 16 34 34 H 1.07998 * 120.14886 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2181 1.1913 0.0000 4 9 1.5679 2.3755 0.0009 5 6 3.6023 1.1517 -0.0005 6 7 4.2468 0.0011 -0.0016 7 6 3.6097 -1.1523 -0.0016 8 6 2.2207 -1.1957 -0.0011 9 7 1.5499 -2.4215 -0.0073 10 6 1.0247 -2.9248 -1.2013 11 6 1.1916 -2.2135 -2.3888 12 6 0.6770 -2.7013 -3.5769 13 6 -0.0087 -3.8988 -3.5989 14 9 -0.5099 -4.3710 -4.7612 15 6 -0.1847 -4.6281 -2.4049 16 6 -0.8858 -5.8548 -2.4175 17 1 -0.9262 -6.4444 -3.3215 18 6 -1.5276 -6.3058 -1.2589 19 7 -1.7940 -5.4675 -0.2901 20 14 -2.0040 -8.1046 -1.0950 21 1 -1.5953 -8.8385 -2.3197 22 1 -1.3210 -8.6919 0.0856 23 1 -3.4747 -8.2132 -0.9210 24 6 0.3466 -4.1288 -1.2024 25 1 -0.3634 -0.0008 1.0276 26 1 -0.3633 0.8904 -0.5132 27 1 -0.3633 -0.8895 -0.5145 28 1 4.1617 2.0756 -0.0001 29 1 4.1730 -2.0737 -0.0020 30 1 1.4487 -2.9232 0.8166 31 1 1.7263 -1.2751 -2.3813 32 1 0.8124 -2.1424 -4.4910 33 1 -2.2393 -5.7801 0.5130 34 1 0.2211 -4.6815 -0.2832 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216196055.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:00 Heat of formation + Delta-G solvation = -50.756545 kcal Electronic energy + Delta-G solvation = -22201.942012 eV Core-core repulsion = 18541.550039 eV Total energy + Delta-G solvation = -3660.391972 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.02000 -49.08171 -41.50393 -39.47371 -36.85597 -35.36624 -34.13959 -31.65670 -31.44837 -29.45442 -28.17754 -27.22430 -24.28712 -23.41020 -23.28147 -22.00844 -19.47922 -18.69646 -18.56301 -17.93696 -17.75047 -17.35872 -16.94574 -16.73913 -16.57797 -15.88848 -15.74798 -14.96162 -14.92977 -14.42215 -14.37224 -14.27330 -13.92445 -13.72473 -13.71799 -13.46683 -13.34117 -13.00382 -12.83096 -12.74204 -12.36098 -12.02771 -11.37945 -11.31436 -11.00111 -10.58948 -10.34489 -9.92211 -9.49920 -8.75114 -8.13661 -6.42777 -0.18550 -0.04981 0.88549 0.97784 1.39607 1.48978 1.54007 2.20839 2.35648 2.55382 2.66502 3.04787 3.44627 3.54881 3.60350 3.67360 3.91272 4.12180 4.29246 4.46387 4.55352 4.58782 4.63978 4.74026 4.98703 5.02732 5.04540 5.15525 5.18792 5.34416 5.51833 5.71388 5.77899 5.97833 6.06425 6.36962 6.68870 6.72338 6.80445 6.88473 6.99877 8.26396 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.022347 B = 0.004412 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.676769 B = 6345.507420 C = 6759.399778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.084 4.084 3 C 0.046 3.954 4 F -0.129 7.129 5 C 0.077 3.923 6 N -0.465 5.465 7 C 0.090 3.910 8 C 0.132 3.868 9 N -0.695 5.695 10 C 0.225 3.775 11 C -0.262 4.262 12 C -0.086 4.086 13 C -0.096 4.096 14 F -0.176 7.176 15 C 0.093 3.907 16 C -0.493 4.493 17 H 0.068 0.932 18 C 0.046 3.954 19 N -0.807 5.807 20 Si 0.979 3.021 21 H -0.265 1.265 22 H -0.257 1.257 23 H -0.265 1.265 24 C -0.220 4.220 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.198 0.802 29 H 0.175 0.825 30 H 0.413 0.587 31 H 0.110 0.890 32 H 0.122 0.878 33 H 0.292 0.708 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.337 8.757 5.960 12.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C 0.024 3.976 4 F -0.108 7.108 5 C -0.081 4.081 6 N -0.173 5.173 7 C -0.069 4.069 8 C 0.036 3.964 9 N -0.327 5.327 10 C 0.127 3.873 11 C -0.285 4.285 12 C -0.105 4.105 13 C -0.117 4.117 14 F -0.155 7.155 15 C 0.089 3.911 16 C -0.522 4.522 17 H 0.086 0.914 18 C -0.171 4.171 19 N -0.432 5.432 20 Si 0.799 3.201 21 H -0.189 1.189 22 H -0.181 1.181 23 H -0.190 1.190 24 C -0.244 4.244 25 H 0.107 0.893 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.214 0.786 29 H 0.192 0.808 30 H 0.252 0.748 31 H 0.128 0.872 32 H 0.140 0.860 33 H 0.103 0.897 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.144 8.941 6.089 12.964 hybrid contribution -1.697 -0.836 -0.062 1.893 sum 5.447 8.105 6.027 11.476 Atomic orbital electron populations 1.20680 0.89036 1.03613 1.03568 1.21096 0.98560 0.91960 0.97802 1.18670 0.91879 0.80763 1.06330 1.91497 1.81610 1.43699 1.93958 1.23342 0.89299 0.98463 0.97038 1.67815 1.39486 0.97916 1.12089 1.23495 0.90981 0.97113 0.95272 1.18256 0.91394 0.85699 1.01022 1.41550 1.62864 1.19940 1.08361 1.17484 0.92332 0.92099 0.85375 1.19847 1.14508 1.03060 0.91068 1.20516 0.97494 0.93934 0.98591 1.18100 1.12674 0.98514 0.82383 1.91214 1.87375 1.89283 1.47648 1.17653 0.90545 0.92545 0.90357 1.19667 1.29769 1.04591 0.98186 0.91412 1.26604 0.92949 1.03662 0.93855 1.69848 1.29288 1.37355 1.06733 0.85207 0.78701 0.76656 0.79500 1.18885 1.18084 1.18979 1.20389 1.07463 0.98031 0.98514 0.89286 0.90372 0.91646 0.78565 0.80815 0.74826 0.87246 0.85983 0.89702 0.86521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.12 9.67 71.24 0.69 -2.43 16 2 C -0.08 -2.29 5.50 -19.50 -0.11 -2.40 16 3 C 0.05 1.10 7.28 22.45 0.16 1.27 16 4 F -0.13 -3.05 16.61 44.97 0.75 -2.30 16 5 C 0.08 1.65 11.17 84.74 0.95 2.60 16 6 N -0.46 -11.46 10.35 -195.08 -2.02 -13.48 16 7 C 0.09 2.31 11.12 84.88 0.94 3.25 16 8 C 0.13 3.73 4.51 38.30 0.17 3.90 16 9 N -0.70 -22.22 4.83 -180.33 -0.87 -23.09 16 10 C 0.23 9.17 5.48 38.14 0.21 9.38 16 11 C -0.26 -10.73 8.94 22.58 0.20 -10.52 16 12 C -0.09 -3.81 10.00 22.24 0.22 -3.59 16 13 C -0.10 -4.93 7.31 22.90 0.17 -4.76 16 14 F -0.18 -9.21 16.72 44.97 0.75 -8.46 16 15 C 0.09 4.94 5.56 -21.26 -0.12 4.83 16 16 C -0.49 -26.64 8.76 23.43 0.21 -26.43 16 17 H 0.07 3.73 7.76 -2.91 -0.02 3.71 16 18 C 0.05 2.25 5.11 85.25 0.44 2.69 16 19 N -0.81 -39.33 11.10 21.82 0.24 -39.09 16 20 Si 0.98 37.04 29.60 68.60 2.03 39.07 16 21 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 22 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 23 H -0.27 -9.61 7.11 99.48 0.71 -8.91 16 24 C -0.22 -10.51 8.52 22.84 0.19 -10.32 16 25 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.08 2.00 7.73 -2.38 -0.02 1.98 16 27 H 0.06 2.21 6.25 -2.39 -0.01 2.20 16 28 H 0.20 2.84 8.06 -2.91 -0.02 2.82 16 29 H 0.17 4.01 8.06 -2.91 -0.02 3.99 16 30 H 0.41 12.06 8.83 -92.71 -0.82 11.24 16 31 H 0.11 4.10 6.70 -2.91 -0.02 4.08 16 32 H 0.12 4.78 8.06 -2.91 -0.02 4.75 16 33 H 0.29 12.66 8.30 -92.71 -0.77 11.89 16 34 H 0.12 5.67 6.30 -2.91 -0.02 5.65 16 Total: -1.00 -57.71 303.63 5.56 -52.16 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: 0.35 Total: 27.73 kcal Atomic # 6 Polarization: -36.87 SS G_CDS: 4.33 Total: -32.54 kcal Atomic # 7 Polarization: -73.01 SS G_CDS: -2.65 Total: -75.66 kcal Atomic # 9 Polarization: -12.25 SS G_CDS: 1.50 Total: -10.76 kcal Atomic # 14 Polarization: 37.04 SS G_CDS: 2.03 Total: 39.07 kcal Total: -57.71 5.56 -52.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216196055.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.402 kcal (2) G-P(sol) polarization free energy of solvation -57.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds