Wall clock time and date at job start Tue Mar 31 2020 08:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31577 * 1 3 3 Si 1.86805 * 119.99677 * 2 1 4 4 H 1.48496 * 109.47057 * 239.99823 * 3 2 1 5 5 H 1.48503 * 109.47151 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47038 * 120.00149 * 3 2 1 7 7 C 1.38629 * 120.00592 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00428 * 180.02562 * 7 2 1 9 9 O 1.34929 * 120.00009 * 359.97438 * 7 2 1 10 10 C 1.42893 * 117.00448 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.61492 * 330.36188 * 10 9 7 12 12 C 1.54689 * 109.61950 * 209.99614 * 10 9 7 13 13 C 1.52560 * 108.66471 * 351.21933 * 12 10 9 14 14 C 1.39375 * 114.47444 * 148.66627 * 13 12 10 15 15 C 1.38046 * 120.25741 * 195.51216 * 14 13 12 16 16 C 1.38448 * 120.59565 * 0.60643 * 15 14 13 17 17 C 1.37952 * 119.55000 * 355.72514 * 16 15 14 18 18 C 1.37300 * 126.44865 * 337.96003 * 13 12 10 19 19 C 1.44883 * 121.52210 * 328.86602 * 18 13 12 20 20 C 1.22469 * 144.05435 * 358.18338 * 19 18 13 21 21 C 1.44546 * 142.22639 * 35.62496 * 20 19 18 22 22 C 1.39083 * 121.53106 * 183.86899 * 21 20 19 23 23 C 1.38288 * 118.90977 * 176.04068 * 22 21 20 24 24 C 1.38405 * 120.00560 * 0.10487 * 23 22 21 25 25 C 1.38455 * 120.82782 * 1.11381 * 24 23 22 26 26 C 1.38143 * 119.65728 * 359.69498 * 25 24 23 27 27 H 0.97001 * 120.00431 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.60717 * 231.45864 * 12 10 9 29 29 H 1.09001 * 109.60066 * 110.96702 * 12 10 9 30 30 H 1.07993 * 119.87490 * 15.82195 * 14 13 12 31 31 H 1.07998 * 119.70928 * 180.33383 * 15 14 13 32 32 H 1.08002 * 120.22722 * 176.00917 * 16 15 14 33 33 H 1.08000 * 120.35711 * 180.31412 * 17 16 15 34 34 H 1.07998 * 120.54204 * 356.00802 * 22 21 20 35 35 H 1.07997 * 119.99241 * 180.13981 * 23 22 21 36 36 H 1.08002 * 119.58439 * 181.08614 * 24 23 22 37 37 H 1.08007 * 120.16914 * 179.71340 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.1034 1.6965 -1.2124 5 1 1.2846 2.7465 0.0006 6 1 3.1035 1.6965 1.2125 7 6 2.0090 -1.2005 -0.0005 8 1 3.0890 -1.2005 -0.0001 9 8 1.3345 -2.3691 -0.0005 10 6 2.1128 -3.5675 -0.0005 11 1 3.0605 -3.3883 -0.5083 12 6 1.3374 -4.6904 -0.7290 13 6 -0.0811 -4.2027 -1.0076 14 6 -0.6538 -4.7242 -2.1663 15 6 -1.7814 -4.1407 -2.7083 16 6 -2.3507 -3.0253 -2.1179 17 6 -1.8373 -2.5476 -0.9299 18 6 -0.7432 -3.1985 -0.3455 19 6 -0.4915 -2.9194 1.0537 20 6 0.1474 -3.2747 2.0362 21 6 1.4302 -3.8101 2.4326 22 6 1.7001 -4.1486 3.7543 23 6 2.9155 -4.7332 4.0599 24 6 3.8407 -4.9705 3.0583 25 6 3.5767 -4.6085 1.7482 26 6 2.3725 -4.0086 1.4342 27 1 -0.4851 0.8400 0.0004 28 1 1.3016 -5.5786 -0.0983 29 1 1.8342 -4.9268 -1.6699 30 1 -0.2167 -5.5912 -2.6392 31 1 -2.2211 -4.5554 -3.6033 32 1 -3.1938 -2.5352 -2.5819 33 1 -2.2744 -1.6815 -0.4554 34 1 0.9726 -3.9575 4.5293 35 1 3.1424 -5.0052 5.0801 36 1 4.7806 -5.4435 3.3017 37 1 4.3083 -4.7944 0.9757 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224380023.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:25:57 Heat of formation + Delta-G solvation = 132.228962 kcal Electronic energy + Delta-G solvation = -22796.941130 eV Core-core repulsion = 19666.420784 eV Total energy + Delta-G solvation = -3130.520346 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.105 amu Computer time = 10.23 seconds Orbital eigenvalues (eV) -39.65969 -38.40450 -36.37194 -33.28384 -32.66488 -31.29224 -30.80134 -30.70613 -28.64537 -26.91619 -24.60727 -23.69883 -22.25694 -21.68478 -20.82595 -20.25481 -17.85073 -17.22777 -16.24350 -15.64912 -15.21160 -14.74290 -14.53993 -14.29373 -13.86825 -13.65195 -13.42140 -13.21302 -12.91339 -12.78851 -12.40851 -11.96761 -11.76256 -11.50618 -11.28043 -11.01124 -10.98590 -10.76881 -10.59942 -10.42285 -10.29577 -10.09648 -9.63710 -9.19478 -8.44225 -8.32871 -8.09519 -7.99080 -7.77201 -7.02912 -5.94448 -3.56705 1.39420 1.72862 1.81881 2.06561 2.48250 3.30822 3.34313 3.35187 3.77412 4.30895 4.35882 4.84840 5.13218 5.25696 5.33421 5.38479 5.40636 5.49099 5.57930 5.63267 5.66940 5.78342 5.86319 5.91279 6.02187 6.12333 6.18893 6.31986 6.36266 6.43607 6.55609 6.69928 6.72302 6.78291 6.87608 6.90825 7.10252 7.18041 7.24015 7.35873 7.47607 7.49187 7.68141 8.42474 8.56127 9.48706 10.05931 11.23135 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.011261 B = 0.009101 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.852281 B = 3075.932141 C = 4643.205061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.035 3.965 3 Si 0.917 3.083 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.281 1.281 7 C -0.370 4.370 8 H 0.060 0.940 9 O -0.251 6.251 10 C 0.120 3.880 11 H 0.062 0.938 12 C -0.069 4.069 13 C -0.071 4.071 14 C -0.135 4.135 15 C -0.134 4.134 16 C -0.138 4.138 17 C -0.077 4.077 18 C 0.132 3.868 19 C 0.005 3.995 20 C -0.238 4.238 21 C 0.091 3.909 22 C -0.114 4.114 23 C -0.128 4.128 24 C -0.133 4.133 25 C -0.116 4.116 26 C -0.089 4.089 27 H 0.256 0.744 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.133 0.867 34 H 0.124 0.876 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.249 -10.343 -0.141 10.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.164 4.164 3 Si 0.745 3.255 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.207 1.207 7 C -0.449 4.449 8 H 0.078 0.922 9 O -0.166 6.166 10 C 0.061 3.939 11 H 0.080 0.920 12 C -0.106 4.106 13 C -0.071 4.071 14 C -0.153 4.153 15 C -0.152 4.152 16 C -0.156 4.156 17 C -0.095 4.095 18 C 0.132 3.868 19 C 0.004 3.996 20 C -0.238 4.238 21 C 0.091 3.909 22 C -0.132 4.132 23 C -0.147 4.147 24 C -0.151 4.151 25 C -0.134 4.134 26 C -0.090 4.090 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.135 0.865 31 H 0.128 0.872 32 H 0.132 0.868 33 H 0.151 0.849 34 H 0.142 0.858 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.969 -10.267 -0.230 10.316 hybrid contribution 0.748 1.534 0.276 1.729 sum 1.718 -8.733 0.046 8.901 Atomic orbital electron populations 1.69958 1.04938 1.25605 1.50937 1.24753 0.95607 0.97151 0.98934 0.86168 0.78705 0.82407 0.78212 1.20614 1.20999 1.20678 1.20827 0.90082 0.82951 1.51000 0.92245 1.85952 1.28970 1.10067 1.91563 1.21319 0.94642 0.88940 0.89039 0.91990 1.21503 0.91361 0.97450 1.00294 1.19835 0.94907 0.96000 0.96326 1.21225 0.97662 1.00414 0.96020 1.20922 0.97097 0.97271 0.99955 1.21049 1.00903 0.97353 0.96293 1.21696 0.94189 0.98121 0.95509 1.15337 0.93404 0.91613 0.86421 1.22724 0.94835 0.95907 0.86128 1.22876 0.95753 0.99409 1.05779 1.15794 0.86878 0.95859 0.92347 1.21287 0.97173 0.99184 0.95580 1.21034 0.94132 1.00674 0.98810 1.21040 0.99241 1.01764 0.93103 1.20968 0.96260 0.99816 0.96370 1.21162 0.92900 0.97146 0.97766 0.93418 0.90790 0.90155 0.86531 0.87170 0.86752 0.84886 0.85780 0.86500 0.86769 0.86167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.01 13.13 55.48 0.73 -24.28 16 2 C 0.04 0.98 5.49 -17.52 -0.10 0.89 16 3 Si 0.92 22.01 29.55 -169.99 -5.02 16.98 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.37 -10.35 9.79 30.88 0.30 -10.05 16 8 H 0.06 1.63 7.64 -52.49 -0.40 1.23 16 9 O -0.25 -6.48 2.89 -16.51 -0.05 -6.53 16 10 C 0.12 2.55 2.78 -26.18 -0.07 2.48 16 11 H 0.06 1.27 7.72 -51.93 -0.40 0.87 16 12 C -0.07 -1.24 5.86 -26.07 -0.15 -1.40 16 13 C -0.07 -1.41 5.50 -103.61 -0.57 -1.98 16 14 C -0.14 -2.28 9.40 -39.23 -0.37 -2.65 16 15 C -0.13 -2.18 10.01 -39.57 -0.40 -2.58 16 16 C -0.14 -2.44 10.07 -39.61 -0.40 -2.84 16 17 C -0.08 -1.63 9.65 -39.00 -0.38 -2.01 16 18 C 0.13 2.99 4.02 -106.92 -0.43 2.56 16 19 C 0.00 0.11 10.42 -37.69 -0.39 -0.28 16 20 C -0.24 -5.71 12.95 -37.83 -0.49 -6.20 16 21 C 0.09 1.94 5.70 -106.92 -0.61 1.33 16 22 C -0.11 -2.04 9.87 -39.25 -0.39 -2.43 16 23 C -0.13 -1.94 10.06 -39.50 -0.40 -2.34 16 24 C -0.13 -1.97 10.01 -39.44 -0.39 -2.37 16 25 C -0.12 -1.93 9.69 -39.54 -0.38 -2.31 16 26 C -0.09 -1.79 4.70 -103.67 -0.49 -2.28 16 27 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.07 1.22 7.61 -51.93 -0.40 0.83 16 29 H 0.08 1.23 7.96 -51.93 -0.41 0.82 16 30 H 0.12 1.59 8.03 -52.49 -0.42 1.17 16 31 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.13 2.93 8.06 -52.49 -0.42 2.51 16 34 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 35 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.12 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 316.50 15.07 4.77 4.77 Total: -1.00 -31.39 316.50 -9.80 -41.19 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -4.13 Total: 2.30 kcal Atomic # 6 Polarization: -28.34 SS G_CDS: -6.10 Total: -34.44 kcal Atomic # 7 Polarization: -25.01 SS G_CDS: 0.73 Total: -24.28 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: -0.05 Total: -6.53 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.39 -9.80 -41.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224380023.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.420 kcal (2) G-P(sol) polarization free energy of solvation -31.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.23 seconds