Wall clock time and date at job start Tue Mar 31 2020 08:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31577 * 1 3 3 Si 1.86805 * 119.99677 * 2 1 4 4 H 1.48496 * 109.47057 * 239.99823 * 3 2 1 5 5 H 1.48503 * 109.47151 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47038 * 120.00149 * 3 2 1 7 7 C 1.38629 * 120.00592 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00428 * 180.02562 * 7 2 1 9 9 O 1.34929 * 120.00009 * 359.97438 * 7 2 1 10 10 C 1.42893 * 117.00448 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.61492 * 330.36188 * 10 9 7 12 12 C 1.54689 * 109.61950 * 209.99614 * 10 9 7 13 13 C 1.52560 * 108.66471 * 351.21933 * 12 10 9 14 14 C 1.39375 * 114.47444 * 148.66627 * 13 12 10 15 15 C 1.38046 * 120.25741 * 195.51216 * 14 13 12 16 16 C 1.38448 * 120.59565 * 0.60643 * 15 14 13 17 17 C 1.37952 * 119.55000 * 355.72514 * 16 15 14 18 18 C 1.37300 * 126.44865 * 337.96003 * 13 12 10 19 19 C 1.44883 * 121.52210 * 328.86602 * 18 13 12 20 20 C 1.22469 * 144.05435 * 358.18338 * 19 18 13 21 21 C 1.44546 * 142.22639 * 35.62496 * 20 19 18 22 22 C 1.39083 * 121.53106 * 183.86899 * 21 20 19 23 23 C 1.38288 * 118.90977 * 176.04068 * 22 21 20 24 24 C 1.38405 * 120.00560 * 0.10487 * 23 22 21 25 25 C 1.38455 * 120.82782 * 1.11381 * 24 23 22 26 26 C 1.38143 * 119.65728 * 359.69498 * 25 24 23 27 27 H 0.97001 * 120.00431 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.60717 * 231.45864 * 12 10 9 29 29 H 1.09001 * 109.60066 * 110.96702 * 12 10 9 30 30 H 1.07993 * 119.87490 * 15.82195 * 14 13 12 31 31 H 1.07998 * 119.70928 * 180.33383 * 15 14 13 32 32 H 1.08002 * 120.22722 * 176.00917 * 16 15 14 33 33 H 1.08000 * 120.35711 * 180.31412 * 17 16 15 34 34 H 1.07998 * 120.54204 * 356.00802 * 22 21 20 35 35 H 1.07997 * 119.99241 * 180.13981 * 23 22 21 36 36 H 1.08002 * 119.58439 * 181.08614 * 24 23 22 37 37 H 1.08007 * 120.16914 * 179.71340 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.1034 1.6965 -1.2124 5 1 1.2846 2.7465 0.0006 6 1 3.1035 1.6965 1.2125 7 6 2.0090 -1.2005 -0.0005 8 1 3.0890 -1.2005 -0.0001 9 8 1.3345 -2.3691 -0.0005 10 6 2.1128 -3.5675 -0.0005 11 1 3.0605 -3.3883 -0.5083 12 6 1.3374 -4.6904 -0.7290 13 6 -0.0811 -4.2027 -1.0076 14 6 -0.6538 -4.7242 -2.1663 15 6 -1.7814 -4.1407 -2.7083 16 6 -2.3507 -3.0253 -2.1179 17 6 -1.8373 -2.5476 -0.9299 18 6 -0.7432 -3.1985 -0.3455 19 6 -0.4915 -2.9194 1.0537 20 6 0.1474 -3.2747 2.0362 21 6 1.4302 -3.8101 2.4326 22 6 1.7001 -4.1486 3.7543 23 6 2.9155 -4.7332 4.0599 24 6 3.8407 -4.9705 3.0583 25 6 3.5767 -4.6085 1.7482 26 6 2.3725 -4.0086 1.4342 27 1 -0.4851 0.8400 0.0004 28 1 1.3016 -5.5786 -0.0983 29 1 1.8342 -4.9268 -1.6699 30 1 -0.2167 -5.5912 -2.6392 31 1 -2.2211 -4.5554 -3.6033 32 1 -3.1938 -2.5352 -2.5819 33 1 -2.2744 -1.6815 -0.4554 34 1 0.9726 -3.9575 4.5293 35 1 3.1424 -5.0052 5.0801 36 1 4.7806 -5.4435 3.3017 37 1 4.3083 -4.7944 0.9757 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224380023.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:25:46 Heat of formation + Delta-G solvation = 116.956766 kcal Electronic energy + Delta-G solvation = -22797.603383 eV Core-core repulsion = 19666.420784 eV Total energy + Delta-G solvation = -3131.182599 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.105 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -41.12885 -39.77964 -38.02973 -34.93222 -34.27238 -33.15636 -32.21638 -32.09158 -30.10574 -28.40007 -26.58386 -25.22351 -23.62460 -23.12831 -22.22306 -21.74748 -19.72478 -18.78325 -17.62530 -17.31579 -16.68878 -16.36463 -16.00269 -15.89176 -15.37493 -15.14066 -14.93165 -14.73047 -14.38846 -14.21637 -13.88193 -13.45923 -13.40310 -13.11337 -12.97159 -12.60330 -12.49351 -12.23786 -12.17951 -12.04148 -11.92446 -11.77127 -11.27875 -10.83048 -10.31109 -9.85055 -9.66161 -9.46465 -9.36328 -8.57756 -8.02627 -5.68174 -0.06185 0.16068 0.49056 0.62499 0.97569 1.35722 1.40127 1.45710 2.28514 2.37472 2.95093 3.26262 3.28045 3.65239 3.87434 3.99220 4.09066 4.23258 4.25211 4.30839 4.33806 4.40356 4.43925 4.52187 4.67854 4.74188 4.79768 4.88418 4.94237 5.02657 5.15472 5.25468 5.27996 5.31341 5.35317 5.54860 5.60743 5.69441 5.74443 5.82508 5.91583 6.14790 6.25769 6.30079 6.85321 7.38268 8.11928 9.14463 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.011261 B = 0.009101 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.852281 B = 3075.932141 C = 4643.205061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C -0.021 4.021 3 Si 0.979 3.021 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.280 1.280 7 C -0.381 4.381 8 H 0.056 0.944 9 O -0.266 6.266 10 C 0.104 3.896 11 H 0.062 0.938 12 C -0.061 4.061 13 C -0.093 4.093 14 C -0.128 4.128 15 C -0.126 4.126 16 C -0.136 4.136 17 C -0.109 4.109 18 C 0.100 3.900 19 C -0.037 4.037 20 C -0.266 4.266 21 C 0.049 3.951 22 C -0.125 4.125 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.119 4.119 26 C -0.110 4.110 27 H 0.251 0.749 28 H 0.085 0.915 29 H 0.110 0.890 30 H 0.158 0.842 31 H 0.155 0.845 32 H 0.140 0.860 33 H 0.104 0.896 34 H 0.130 0.870 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.407 -12.554 -0.929 13.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.217 4.217 3 Si 0.804 3.196 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.206 1.206 7 C -0.460 4.460 8 H 0.074 0.926 9 O -0.181 6.181 10 C 0.045 3.955 11 H 0.079 0.921 12 C -0.098 4.098 13 C -0.093 4.093 14 C -0.146 4.146 15 C -0.143 4.143 16 C -0.154 4.154 17 C -0.127 4.127 18 C 0.100 3.900 19 C -0.038 4.038 20 C -0.266 4.266 21 C 0.049 3.951 22 C -0.143 4.143 23 C -0.137 4.137 24 C -0.136 4.136 25 C -0.136 4.136 26 C -0.110 4.110 27 H 0.060 0.940 28 H 0.104 0.896 29 H 0.128 0.872 30 H 0.175 0.825 31 H 0.173 0.827 32 H 0.158 0.842 33 H 0.122 0.878 34 H 0.148 0.852 35 H 0.175 0.825 36 H 0.176 0.824 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.139 -12.501 -1.018 12.929 hybrid contribution 0.121 2.079 0.557 2.156 sum 3.260 -10.422 -0.460 10.929 Atomic orbital electron populations 1.70160 1.06127 1.25711 1.51993 1.25654 0.96575 1.00249 0.99185 0.85219 0.77528 0.78490 0.78371 1.19417 1.20891 1.20612 1.21119 0.90059 0.84482 1.50330 0.92645 1.86001 1.29780 1.10450 1.91879 1.21643 0.94723 0.88469 0.90630 0.92056 1.21554 0.90277 0.96480 1.01514 1.20169 0.95772 0.95909 0.97417 1.21699 0.97486 1.00841 0.94531 1.21414 0.96269 0.95968 1.00695 1.21369 1.01225 0.97823 0.94955 1.21594 0.95401 0.98194 0.97516 1.15686 0.94849 0.93493 0.85988 1.23749 0.95435 0.97114 0.87461 1.23986 0.96684 0.99629 1.06287 1.16170 0.86360 0.98221 0.94383 1.21497 0.98869 0.99517 0.94386 1.21489 0.92527 0.98644 1.00995 1.21561 1.00466 0.99707 0.91907 1.21312 0.95187 0.98916 0.98224 1.21156 0.94253 0.98841 0.96785 0.94047 0.89616 0.87184 0.82464 0.82738 0.84222 0.87756 0.85226 0.82512 0.82373 0.83614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.27 13.13 21.61 0.28 -53.99 16 2 C -0.02 -1.19 5.49 84.82 0.47 -0.73 16 3 Si 0.98 46.43 29.55 68.60 2.03 48.46 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 6 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 7 C -0.38 -22.10 9.79 67.91 0.66 -21.44 16 8 H 0.06 3.13 7.64 -2.91 -0.02 3.11 16 9 O -0.27 -14.33 2.89 -81.99 -0.24 -14.56 16 10 C 0.10 4.49 2.78 30.95 0.09 4.57 16 11 H 0.06 2.54 7.72 -2.39 -0.02 2.52 16 12 C -0.06 -2.17 5.86 31.02 0.18 -1.99 16 13 C -0.09 -3.70 5.50 -19.21 -0.11 -3.80 16 14 C -0.13 -4.01 9.40 22.50 0.21 -3.80 16 15 C -0.13 -3.74 10.01 22.27 0.22 -3.52 16 16 C -0.14 -4.78 10.07 22.25 0.22 -4.55 16 17 C -0.11 -4.90 9.65 22.65 0.22 -4.68 16 18 C 0.10 4.76 4.02 -21.35 -0.09 4.68 16 19 C -0.04 -1.98 10.42 29.53 0.31 -1.67 16 20 C -0.27 -13.67 12.95 29.44 0.38 -13.29 16 21 C 0.05 2.14 5.70 -21.35 -0.12 2.01 16 22 C -0.12 -4.42 9.87 22.48 0.22 -4.20 16 23 C -0.12 -3.21 10.06 22.32 0.22 -2.99 16 24 C -0.12 -3.03 10.01 22.36 0.22 -2.80 16 25 C -0.12 -3.65 9.69 22.30 0.22 -3.43 16 26 C -0.11 -4.41 4.70 -19.25 -0.09 -4.50 16 27 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 28 H 0.09 2.76 7.61 -2.39 -0.02 2.74 16 29 H 0.11 3.11 7.96 -2.39 -0.02 3.09 16 30 H 0.16 3.57 8.03 -2.91 -0.02 3.55 16 31 H 0.15 3.25 8.06 -2.91 -0.02 3.22 16 32 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 33 H 0.10 5.12 8.06 -2.91 -0.02 5.09 16 34 H 0.13 4.26 8.06 -2.91 -0.02 4.23 16 35 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 36 H 0.16 2.70 8.06 -2.91 -0.02 2.67 16 37 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -74.50 316.50 6.61 -67.90 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 1.08 Total: 18.32 kcal Atomic # 6 Polarization: -69.57 SS G_CDS: 3.45 Total: -66.12 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.28 Total: -53.99 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.24 Total: -14.56 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -74.50 6.61 -67.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224380023.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.854 kcal (2) G-P(sol) polarization free energy of solvation -74.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds