Wall clock time and date at job start Tue Mar 31 2020 07:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36122 * 120.12622 * 2 1 4 4 C 1.39302 * 121.06098 * 180.02562 * 3 2 1 5 5 C 1.36181 * 120.86476 * 0.02562 * 4 3 2 6 6 C 1.40375 * 119.62140 * 0.02562 * 5 4 3 7 7 C 1.40823 * 121.36375 * 180.02562 * 6 5 4 8 8 C 1.36500 * 118.17320 * 179.66597 * 7 6 5 9 9 C 1.50703 * 120.03356 * 180.27725 * 8 7 6 10 10 N 1.46505 * 109.47296 * 99.46370 * 9 8 7 11 11 C 1.46500 * 119.99841 * 275.43047 * 10 9 8 12 12 C 1.36934 * 119.99959 * 95.43128 * 10 9 8 13 13 H 1.07998 * 120.00253 * 25.19156 * 12 10 9 14 14 C 1.38811 * 119.99969 * 205.19853 * 12 10 9 15 15 N 1.31620 * 119.99656 * 12.99458 * 14 12 10 16 16 Si 1.86800 * 120.00235 * 193.00039 * 14 12 10 17 17 H 1.48509 * 109.46787 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47248 * 119.99373 * 16 14 12 19 19 H 1.48500 * 109.46942 * 239.99816 * 16 14 12 20 20 C 1.39514 * 119.93295 * 0.57579 * 8 7 6 21 21 Cl 1.73596 * 119.14375 * 179.69684 * 20 8 7 22 22 N 1.31186 * 121.71182 * 359.42760 * 20 8 7 23 23 C 1.33717 * 121.30716 * 0.26386 * 22 20 8 24 24 H 1.09000 * 109.46887 * 269.98056 * 1 2 3 25 25 H 1.08998 * 109.47213 * 29.97694 * 1 2 3 26 26 H 1.08994 * 109.46963 * 149.98230 * 1 2 3 27 27 H 1.08000 * 119.47335 * 0.02562 * 3 2 1 28 28 H 1.07999 * 119.56752 * 180.02562 * 4 3 2 29 29 H 1.07999 * 120.19272 * 180.02562 * 5 4 3 30 30 H 1.07994 * 120.90893 * 359.97438 * 7 6 5 31 31 H 1.09003 * 109.46803 * 219.46224 * 9 8 7 32 32 H 1.09000 * 109.46912 * 339.46488 * 9 8 7 33 33 H 1.08997 * 109.46889 * 91.16740 * 11 10 9 34 34 H 1.09000 * 109.46839 * 211.17346 * 11 10 9 35 35 H 1.09002 * 109.47249 * 331.16917 * 11 10 9 36 36 H 0.97011 * 119.99386 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.1773 0.0000 4 6 3.5830 1.2001 -0.0005 5 6 4.3006 0.0427 -0.0016 6 6 3.6291 -1.1900 -0.0027 7 6 4.3344 -2.4089 -0.0033 8 6 3.6158 -3.5694 0.0027 9 6 4.3278 -4.8975 0.0086 10 7 4.3592 -5.4288 1.3736 11 6 5.4138 -5.0078 2.2993 12 6 3.4029 -6.3187 1.7841 13 1 2.8919 -6.9350 1.0591 14 6 3.0900 -6.4287 3.1320 15 7 3.5131 -5.5174 3.9822 16 14 2.0687 -7.8701 3.7392 17 1 1.7199 -8.7474 2.5928 18 1 2.8498 -8.6451 4.7363 19 1 0.8239 -7.3634 4.3709 20 6 2.2213 -3.5247 -0.0031 21 17 1.3278 -5.0131 -0.0034 22 7 1.5678 -2.3872 -0.0030 23 6 2.2123 -1.2156 -0.0027 24 1 -0.3633 -0.0003 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5141 27 1 1.6436 2.1089 0.0004 28 1 4.1005 2.1480 -0.0001 29 1 5.3802 0.0730 -0.0016 30 1 5.4142 -2.4249 -0.0033 31 1 3.7999 -5.5957 -0.6410 32 1 5.3475 -4.7647 -0.3531 33 1 5.0777 -4.1361 2.8607 34 1 5.6368 -5.8211 2.9900 35 1 6.3115 -4.7532 1.7360 36 1 3.2948 -5.5946 4.9243 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231653081.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:24 Heat of formation + Delta-G solvation = 50.087455 kcal Electronic energy + Delta-G solvation = -20688.295457 eV Core-core repulsion = 17584.073089 eV Total energy + Delta-G solvation = -3104.222368 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.85677 -38.79563 -37.35573 -37.01998 -35.17358 -33.63232 -32.03524 -31.38269 -28.11107 -27.83133 -27.40557 -24.98902 -24.28880 -22.62540 -21.73765 -19.23010 -18.75217 -18.18116 -17.39659 -16.72021 -15.98446 -15.81360 -15.42431 -15.34683 -15.11716 -14.86956 -14.38330 -14.09998 -14.05637 -13.58668 -13.23550 -13.06439 -12.90579 -12.88041 -12.68896 -12.52740 -12.33477 -12.23912 -12.09430 -11.92549 -11.74999 -11.58846 -11.15747 -10.68334 -10.48094 -9.49583 -9.01965 -8.73984 -7.81123 -5.25414 -0.58068 -0.17131 0.98979 1.04009 1.41702 1.45066 1.52581 1.92440 2.52606 3.06727 3.35252 3.48337 3.63098 3.77980 3.84797 3.94044 4.05491 4.25185 4.37131 4.43663 4.54862 4.61115 4.78759 4.87364 4.89722 4.90353 4.97449 5.13482 5.18052 5.32489 5.34306 5.50895 5.52740 5.58010 5.68694 5.75854 5.97823 6.37111 6.74002 7.18717 7.87136 8.31075 9.23421 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.020286 B = 0.005645 C = 0.005158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.958274 B = 4958.543859 C = 5426.845926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.085 4.085 3 C -0.101 4.101 4 C -0.108 4.108 5 C -0.105 4.105 6 C -0.113 4.113 7 C -0.051 4.051 8 C -0.143 4.143 9 C 0.181 3.819 10 N -0.599 5.599 11 C 0.176 3.824 12 C -0.227 4.227 13 H 0.073 0.927 14 C -0.047 4.047 15 N -0.936 5.936 16 Si 0.943 3.057 17 H -0.264 1.264 18 H -0.289 1.289 19 H -0.301 1.301 20 C 0.210 3.790 21 Cl -0.030 7.030 22 N -0.500 5.500 23 C 0.102 3.898 24 H 0.065 0.935 25 H 0.094 0.906 26 H 0.055 0.945 27 H 0.162 0.838 28 H 0.166 0.834 29 H 0.157 0.843 30 H 0.169 0.831 31 H 0.066 0.934 32 H 0.084 0.916 33 H -0.006 1.006 34 H 0.022 0.978 35 H 0.039 0.961 36 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.813 13.646 -10.681 17.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.086 4.086 3 C -0.121 4.121 4 C -0.125 4.125 5 C -0.124 4.124 6 C -0.115 4.115 7 C -0.078 4.078 8 C -0.149 4.149 9 C 0.055 3.945 10 N -0.319 5.319 11 C 0.032 3.968 12 C -0.358 4.358 13 H 0.091 0.909 14 C -0.241 4.241 15 N -0.583 5.583 16 Si 0.772 3.228 17 H -0.189 1.189 18 H -0.216 1.216 19 H -0.229 1.229 20 C 0.031 3.969 21 Cl -0.001 7.001 22 N -0.212 5.212 23 C -0.020 4.020 24 H 0.084 0.916 25 H 0.113 0.887 26 H 0.074 0.926 27 H 0.179 0.821 28 H 0.183 0.817 29 H 0.175 0.825 30 H 0.187 0.813 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.012 0.988 34 H 0.041 0.959 35 H 0.058 0.942 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.801 13.548 -10.507 17.164 hybrid contribution -0.237 -1.241 1.044 1.639 sum 0.564 12.307 -9.463 15.535 Atomic orbital electron populations 1.20652 0.89662 1.03258 1.02369 1.19850 0.97463 0.90714 1.00524 1.21173 0.94994 0.97519 0.98415 1.21335 0.93862 0.99436 0.97888 1.21288 1.01384 0.90225 0.99491 1.19174 0.93621 0.96202 1.02516 1.21594 1.01380 0.89656 0.95210 1.21588 0.92465 1.00724 1.00154 1.20157 0.98512 0.88515 0.87340 1.44313 1.28903 1.48858 1.09834 1.20549 0.87856 0.97124 0.91320 1.19428 1.14177 1.10877 0.91305 0.90926 1.25609 1.00833 0.99906 0.97796 1.70207 1.51022 1.34808 1.02233 0.85546 0.78257 0.80456 0.78500 1.18861 1.21607 1.22850 1.21954 0.89678 0.88122 0.97183 1.98383 1.76527 1.29255 1.95962 1.67217 1.41039 0.97588 1.15317 1.18994 0.90896 0.91191 1.00906 0.91626 0.88691 0.92632 0.82067 0.81650 0.82501 0.81337 0.91607 0.89796 0.98773 0.95874 0.94227 0.94735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.61 9.80 71.23 0.70 -1.91 16 2 C -0.08 -2.43 5.89 -19.80 -0.12 -2.55 16 3 C -0.10 -2.11 9.58 22.03 0.21 -1.90 16 4 C -0.11 -2.01 9.95 22.05 0.22 -1.79 16 5 C -0.11 -2.42 9.77 22.31 0.22 -2.20 16 6 C -0.11 -3.63 5.74 -21.27 -0.12 -3.75 16 7 C -0.05 -1.70 9.50 22.50 0.21 -1.48 16 8 C -0.14 -5.60 5.44 -19.96 -0.11 -5.71 16 9 C 0.18 7.06 5.38 85.63 0.46 7.52 16 10 N -0.60 -28.71 2.90 -731.29 -2.12 -30.83 16 11 C 0.18 8.33 9.02 127.77 1.15 9.49 16 12 C -0.23 -12.04 7.78 84.03 0.65 -11.39 16 13 H 0.07 3.79 7.23 -2.91 -0.02 3.77 16 14 C -0.05 -2.61 5.06 84.86 0.43 -2.18 16 15 N -0.94 -55.86 10.87 21.65 0.24 -55.63 16 16 Si 0.94 45.98 29.57 68.60 2.03 48.01 16 17 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 19 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 20 C 0.21 8.99 7.26 85.10 0.62 9.61 16 21 Cl -0.03 -1.28 25.13 -2.72 -0.07 -1.35 16 22 N -0.50 -20.84 9.38 -179.53 -1.68 -22.53 16 23 C 0.10 3.68 6.58 40.27 0.27 3.95 16 24 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.09 1.70 8.08 -2.39 -0.02 1.68 16 26 H 0.05 1.64 7.55 -2.39 -0.02 1.62 16 27 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 28 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 29 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 30 H 0.17 4.32 8.05 -2.91 -0.02 4.30 16 31 H 0.07 2.55 7.12 -2.39 -0.02 2.53 16 32 H 0.08 2.68 7.83 -2.39 -0.02 2.66 16 33 H -0.01 -0.33 7.52 -2.39 -0.02 -0.34 16 34 H 0.02 1.18 7.23 -2.39 -0.02 1.16 16 35 H 0.04 1.51 7.93 -2.39 -0.02 1.50 16 36 H 0.24 14.33 8.31 -92.70 -0.77 13.56 16 Total: -1.00 -69.54 315.13 4.27 -65.26 By element: Atomic # 1 Polarization: 0.28 SS G_CDS: 1.09 Total: 1.37 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: 4.79 Total: -4.31 kcal Atomic # 7 Polarization: -105.41 SS G_CDS: -3.57 Total: -108.98 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.07 Total: -1.35 kcal Total: -69.54 4.27 -65.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231653081.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.351 kcal (2) G-P(sol) polarization free energy of solvation -69.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds