Wall clock time and date at job start Tue Mar 31 2020 08:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46896 * 111.00324 * 2 1 4 4 C 1.50695 * 109.47376 * 66.03856 * 3 2 1 5 5 H 1.08000 * 120.00256 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00120 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99870 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 120.00336 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.46784 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47032 * 119.99667 * 8 6 4 11 11 H 1.48494 * 109.46963 * 240.00223 * 8 6 4 12 12 C 1.46901 * 110.99958 * 236.04000 * 2 1 3 13 13 C 1.50704 * 109.47283 * 293.95333 * 12 2 1 14 14 C 1.39354 * 119.46483 * 269.98460 * 13 12 2 15 15 C 1.36226 * 121.00825 * 180.02562 * 14 13 12 16 16 C 1.40213 * 119.48337 * 359.97438 * 15 14 13 17 17 C 1.40729 * 122.21350 * 180.02562 * 16 15 14 18 18 C 1.36141 * 118.70347 * 180.02562 * 17 16 15 19 19 N 1.32635 * 121.89370 * 0.02629 * 18 17 16 20 20 C 1.31358 * 122.75444 * 359.67041 * 19 18 17 21 21 Cl 1.73609 * 120.07456 * 180.30713 * 20 19 18 22 22 C 1.40586 * 119.85133 * 0.58158 * 20 19 18 23 23 C 1.36193 * 119.45504 * 89.99844 * 13 12 2 24 24 H 1.08997 * 109.47347 * 183.95956 * 1 2 3 25 25 H 1.09001 * 109.46833 * 303.95999 * 1 2 3 26 26 H 1.09000 * 109.46702 * 63.95606 * 1 2 3 27 27 H 1.09000 * 109.47175 * 186.04875 * 3 2 1 28 28 H 1.09009 * 109.46815 * 306.04466 * 3 2 1 29 29 H 0.97003 * 119.99755 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.46884 * 173.95524 * 12 2 1 31 31 H 1.08998 * 109.47116 * 53.96034 * 12 2 1 32 32 H 1.08003 * 119.49300 * 359.96866 * 14 13 12 33 33 H 1.08000 * 120.25828 * 179.97438 * 15 14 13 34 34 H 1.07998 * 120.64794 * 0.02836 * 17 16 15 35 35 H 1.07995 * 119.05192 * 179.97438 * 18 17 16 36 36 H 1.08003 * 120.24727 * 0.02846 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0745 1.5114 2.0487 6 6 2.0268 3.3495 1.5283 7 7 2.7113 4.0021 0.6143 8 14 1.5829 4.1871 3.1380 9 1 0.8166 3.2441 3.9916 10 1 2.8249 4.5946 3.8428 11 1 0.7551 5.3879 2.8592 12 6 1.9955 -0.7661 -1.1375 13 6 1.6370 -2.2206 -0.9726 14 6 2.5092 -3.0688 -0.2932 15 6 2.2168 -4.3888 -0.1264 16 6 1.0196 -4.9015 -0.6459 17 6 0.6601 -6.2549 -0.5065 18 6 -0.5196 -6.6763 -1.0397 19 7 -1.3328 -5.8494 -1.6833 20 6 -1.0656 -4.5737 -1.8466 21 17 -2.1843 -3.5521 -2.6945 22 6 0.1310 -4.0387 -1.3384 23 6 0.4659 -2.6845 -1.4904 24 1 -0.3634 -1.0252 0.0710 25 1 -0.3633 0.5741 0.8524 26 1 -0.3633 0.4512 -0.9233 27 1 3.0798 1.3443 -0.1083 28 1 1.5612 1.9273 -0.8310 29 1 2.9859 4.9183 0.7763 30 1 3.0797 -0.6612 -1.1755 31 1 1.5612 -0.3874 -2.0628 32 1 3.4315 -2.6738 0.1064 33 1 2.9018 -5.0354 0.4019 34 1 1.3073 -6.9457 0.0133 35 1 -0.8009 -7.7138 -0.9364 36 1 -0.1999 -2.0153 -2.0152 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231974444.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:59 Heat of formation + Delta-G solvation = 49.429575 kcal Electronic energy + Delta-G solvation = -19850.820914 eV Core-core repulsion = 16746.570018 eV Total energy + Delta-G solvation = -3104.250896 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.99716 -38.21840 -36.86459 -36.10341 -33.12822 -32.46773 -31.48288 -30.04838 -27.26470 -26.88966 -24.35631 -24.13572 -22.52361 -22.11513 -20.36752 -18.05752 -17.25763 -16.85796 -16.30535 -15.43713 -15.09894 -14.78285 -14.58599 -14.50328 -14.12752 -13.99301 -13.59269 -13.29410 -12.40558 -12.34086 -11.97783 -11.90145 -11.76785 -11.48040 -11.40763 -11.20046 -11.04943 -10.88427 -10.68944 -10.48297 -10.03379 -9.94210 -9.77068 -9.27772 -9.07177 -8.48244 -8.10318 -7.33115 -6.06785 -4.08122 0.12650 0.74439 1.60601 1.74316 2.87789 3.28798 3.36450 3.41410 3.85777 4.26868 4.39472 4.40949 4.56884 4.68253 4.87598 4.98049 5.08263 5.16195 5.29040 5.30073 5.52792 5.61868 5.70256 5.86139 5.94786 6.05337 6.15332 6.27269 6.29451 6.31268 6.61231 6.71972 6.76084 7.20523 7.27323 7.55403 7.74513 8.00371 8.11818 8.47289 8.99707 9.56398 11.04091 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.024074 B = 0.003614 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.818163 B = 7745.863477 C = 8250.919713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.534 5.534 3 C 0.192 3.808 4 C -0.507 4.507 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.083 3.917 13 C -0.048 4.048 14 C -0.062 4.062 15 C -0.120 4.120 16 C -0.020 4.020 17 C -0.148 4.148 18 C 0.081 3.919 19 N -0.486 5.486 20 C 0.215 3.785 21 Cl -0.023 7.023 22 C -0.092 4.092 23 C -0.089 4.089 24 H 0.047 0.953 25 H 0.076 0.924 26 H 0.012 0.988 27 H 0.031 0.969 28 H -0.007 1.007 29 H 0.261 0.739 30 H 0.082 0.918 31 H 0.037 0.963 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.143 0.857 35 H 0.159 0.841 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.159 -19.352 -4.920 20.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.258 5.258 3 C 0.068 3.932 4 C -0.546 4.546 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.211 1.211 12 C -0.045 4.045 13 C -0.049 4.049 14 C -0.082 4.082 15 C -0.138 4.138 16 C -0.025 4.025 17 C -0.167 4.167 18 C -0.062 4.062 19 N -0.197 5.197 20 C 0.037 3.963 21 Cl 0.006 6.994 22 C -0.095 4.095 23 C -0.109 4.109 24 H 0.066 0.934 25 H 0.094 0.906 26 H 0.031 0.969 27 H 0.049 0.951 28 H 0.011 0.989 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.161 0.839 35 H 0.176 0.824 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.751 -19.767 -4.882 20.703 hybrid contribution 0.143 1.359 0.360 1.413 sum -3.608 -18.407 -4.521 19.295 Atomic orbital electron populations 1.22310 0.88761 0.99817 1.00711 1.62166 1.07191 1.17797 1.38631 1.19775 0.95426 0.81183 0.96862 1.21182 1.34833 0.96893 1.01643 0.91765 1.24986 0.95270 0.97324 0.97011 1.69967 1.38418 1.11432 1.34004 0.86445 0.78178 0.79335 0.83506 1.19641 1.20986 1.21090 1.21162 1.00912 0.88634 0.93781 1.19863 0.93498 0.96600 0.94926 1.21055 0.99547 0.92679 0.94905 1.20914 0.95790 0.96091 1.00962 1.18088 0.94666 0.93130 0.96647 1.21960 0.98452 0.95187 1.01131 1.21961 0.90641 0.98810 0.94811 1.66701 1.34039 1.03043 1.15893 1.21907 0.89392 0.89965 0.95036 1.98412 1.61456 1.64470 1.75074 1.18470 0.94282 0.95470 1.01262 1.20976 0.96970 0.93193 0.99806 0.93432 0.90551 0.96904 0.95090 0.98944 0.92944 0.89994 0.94504 0.84738 0.84741 0.83927 0.82363 0.84714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 8.91 60.07 0.54 1.16 16 2 N -0.53 -11.06 4.74 -245.82 -1.17 -12.23 16 3 C 0.19 4.85 4.72 -4.98 -0.02 4.82 16 4 C -0.51 -13.96 8.46 -34.44 -0.29 -14.25 16 5 H 0.06 1.76 7.12 -52.49 -0.37 1.39 16 6 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -26.26 13.29 55.43 0.74 -25.52 16 8 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.08 1.40 5.09 -4.97 -0.03 1.37 16 13 C -0.05 -0.70 4.87 -104.94 -0.51 -1.21 16 14 C -0.06 -0.80 9.59 -39.89 -0.38 -1.18 16 15 C -0.12 -1.33 9.81 -39.56 -0.39 -1.72 16 16 C -0.02 -0.24 5.75 -106.82 -0.61 -0.85 16 17 C -0.15 -1.43 9.88 -39.39 -0.39 -1.82 16 18 C 0.08 0.84 11.06 -17.96 -0.20 0.64 16 19 N -0.49 -6.38 10.29 -10.27 -0.11 -6.49 16 20 C 0.22 2.92 7.36 -16.87 -0.12 2.79 16 21 Cl -0.02 -0.29 27.77 -51.86 -1.44 -1.73 16 22 C -0.09 -1.25 5.74 -106.83 -0.61 -1.86 16 23 C -0.09 -1.25 7.30 -39.53 -0.29 -1.54 16 24 H 0.05 0.82 6.15 -51.93 -0.32 0.50 16 25 H 0.08 1.59 6.76 -51.93 -0.35 1.24 16 26 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.03 0.82 7.93 -51.93 -0.41 0.41 16 28 H -0.01 -0.20 8.12 -51.92 -0.42 -0.62 16 29 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.08 1.33 7.87 -51.93 -0.41 0.92 16 31 H 0.04 0.61 8.05 -51.93 -0.42 0.19 16 32 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 33 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 35 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.14 1.85 7.00 -52.48 -0.37 1.48 16 LS Contribution 318.63 15.07 4.80 4.80 Total: -1.00 -30.47 318.63 -9.93 -40.40 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -4.32 Total: -3.39 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -3.41 Total: -12.19 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: -0.54 Total: -44.24 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -1.44 Total: -1.73 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.47 -9.93 -40.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231974444.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.825 kcal (2) G-P(sol) polarization free energy of solvation -30.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds