Wall clock time and date at job start Tue Mar 31 2020 08:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46896 * 111.00324 * 2 1 4 4 C 1.50695 * 109.47376 * 66.03856 * 3 2 1 5 5 H 1.08000 * 120.00256 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00120 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99870 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 120.00336 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.46784 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47032 * 119.99667 * 8 6 4 11 11 H 1.48494 * 109.46963 * 240.00223 * 8 6 4 12 12 C 1.46901 * 110.99958 * 236.04000 * 2 1 3 13 13 C 1.50704 * 109.47283 * 293.95333 * 12 2 1 14 14 C 1.39354 * 119.46483 * 269.98460 * 13 12 2 15 15 C 1.36226 * 121.00825 * 180.02562 * 14 13 12 16 16 C 1.40213 * 119.48337 * 359.97438 * 15 14 13 17 17 C 1.40729 * 122.21350 * 180.02562 * 16 15 14 18 18 C 1.36141 * 118.70347 * 180.02562 * 17 16 15 19 19 N 1.32635 * 121.89370 * 0.02629 * 18 17 16 20 20 C 1.31358 * 122.75444 * 359.67041 * 19 18 17 21 21 Cl 1.73609 * 120.07456 * 180.30713 * 20 19 18 22 22 C 1.40586 * 119.85133 * 0.58158 * 20 19 18 23 23 C 1.36193 * 119.45504 * 89.99844 * 13 12 2 24 24 H 1.08997 * 109.47347 * 183.95956 * 1 2 3 25 25 H 1.09001 * 109.46833 * 303.95999 * 1 2 3 26 26 H 1.09000 * 109.46702 * 63.95606 * 1 2 3 27 27 H 1.09000 * 109.47175 * 186.04875 * 3 2 1 28 28 H 1.09009 * 109.46815 * 306.04466 * 3 2 1 29 29 H 0.97003 * 119.99755 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.46884 * 173.95524 * 12 2 1 31 31 H 1.08998 * 109.47116 * 53.96034 * 12 2 1 32 32 H 1.08003 * 119.49300 * 359.96866 * 14 13 12 33 33 H 1.08000 * 120.25828 * 179.97438 * 15 14 13 34 34 H 1.07998 * 120.64794 * 0.02836 * 17 16 15 35 35 H 1.07995 * 119.05192 * 179.97438 * 18 17 16 36 36 H 1.08003 * 120.24727 * 0.02846 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0745 1.5114 2.0487 6 6 2.0268 3.3495 1.5283 7 7 2.7113 4.0021 0.6143 8 14 1.5829 4.1871 3.1380 9 1 0.8166 3.2441 3.9916 10 1 2.8249 4.5946 3.8428 11 1 0.7551 5.3879 2.8592 12 6 1.9955 -0.7661 -1.1375 13 6 1.6370 -2.2206 -0.9726 14 6 2.5092 -3.0688 -0.2932 15 6 2.2168 -4.3888 -0.1264 16 6 1.0196 -4.9015 -0.6459 17 6 0.6601 -6.2549 -0.5065 18 6 -0.5196 -6.6763 -1.0397 19 7 -1.3328 -5.8494 -1.6833 20 6 -1.0656 -4.5737 -1.8466 21 17 -2.1843 -3.5521 -2.6945 22 6 0.1310 -4.0387 -1.3384 23 6 0.4659 -2.6845 -1.4904 24 1 -0.3634 -1.0252 0.0710 25 1 -0.3633 0.5741 0.8524 26 1 -0.3633 0.4512 -0.9233 27 1 3.0798 1.3443 -0.1083 28 1 1.5612 1.9273 -0.8310 29 1 2.9859 4.9183 0.7763 30 1 3.0797 -0.6612 -1.1755 31 1 1.5612 -0.3874 -2.0628 32 1 3.4315 -2.6738 0.1064 33 1 2.9018 -5.0354 0.4019 34 1 1.3073 -6.9457 0.0133 35 1 -0.8009 -7.7138 -0.9364 36 1 -0.1999 -2.0153 -2.0152 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231974444.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:58 Heat of formation + Delta-G solvation = 31.277503 kcal Electronic energy + Delta-G solvation = -19851.608047 eV Core-core repulsion = 16746.570018 eV Total energy + Delta-G solvation = -3105.038029 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.92145 -39.37961 -37.85770 -37.48399 -34.80268 -33.78331 -32.56742 -31.08156 -29.12373 -28.29432 -25.91837 -25.11084 -23.76939 -23.16553 -22.01257 -18.98777 -18.59891 -18.05401 -17.80260 -16.81617 -16.37218 -16.16697 -15.77837 -15.65475 -15.59759 -14.94452 -14.86891 -14.66382 -13.94193 -13.52770 -13.38234 -13.28155 -12.90986 -12.84383 -12.72176 -12.55452 -12.48399 -12.46153 -12.32556 -12.04706 -11.82015 -11.28731 -10.97114 -10.69508 -10.62030 -10.08848 -9.14161 -8.93800 -8.20442 -6.30090 -0.78568 -0.20206 0.68390 0.80469 1.41410 1.42251 1.55537 1.94200 2.40993 2.90935 3.12548 3.36998 3.47174 3.54135 3.65892 3.83211 3.86694 4.06226 4.28658 4.33682 4.46935 4.51293 4.65101 4.70459 4.74315 4.76437 4.95906 4.97718 5.05266 5.17870 5.27174 5.36528 5.48955 5.57741 5.64661 5.79796 6.03483 6.27425 6.57624 6.68617 6.85704 7.39572 8.90626 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.024074 B = 0.003614 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.818163 B = 7745.863477 C = 8250.919713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.538 5.538 3 C 0.207 3.793 4 C -0.522 4.522 5 H 0.062 0.938 6 C 0.003 3.997 7 N -0.934 5.934 8 Si 0.967 3.033 9 H -0.265 1.265 10 H -0.277 1.277 11 H -0.280 1.280 12 C 0.086 3.914 13 C -0.059 4.059 14 C -0.081 4.081 15 C -0.100 4.100 16 C -0.034 4.034 17 C -0.129 4.129 18 C 0.072 3.928 19 N -0.501 5.501 20 C 0.194 3.806 21 Cl -0.029 7.029 22 C -0.105 4.105 23 C -0.097 4.097 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.013 0.987 27 H 0.011 0.989 28 H -0.036 1.036 29 H 0.264 0.736 30 H 0.083 0.917 31 H 0.035 0.965 32 H 0.142 0.858 33 H 0.173 0.827 34 H 0.186 0.814 35 H 0.194 0.806 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.974 -21.907 -3.446 22.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.262 5.262 3 C 0.081 3.919 4 C -0.560 4.560 5 H 0.080 0.920 6 C -0.195 4.195 7 N -0.574 5.574 8 Si 0.792 3.208 9 H -0.189 1.189 10 H -0.203 1.203 11 H -0.205 1.205 12 C -0.042 4.042 13 C -0.059 4.059 14 C -0.100 4.100 15 C -0.117 4.117 16 C -0.039 4.039 17 C -0.148 4.148 18 C -0.071 4.071 19 N -0.212 5.212 20 C 0.017 3.983 21 Cl 0.000 7.000 22 C -0.108 4.108 23 C -0.117 4.117 24 H 0.088 0.912 25 H 0.076 0.924 26 H 0.031 0.969 27 H 0.029 0.971 28 H -0.018 1.018 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.053 0.947 32 H 0.160 0.840 33 H 0.190 0.810 34 H 0.203 0.797 35 H 0.211 0.789 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.577 -22.339 -3.418 22.880 hybrid contribution 0.081 1.976 -0.142 1.983 sum -3.496 -20.363 -3.560 20.965 Atomic orbital electron populations 1.22233 0.87940 1.00829 0.99839 1.62056 1.07953 1.15289 1.40916 1.19429 0.94038 0.83377 0.95092 1.21477 1.34779 0.97460 1.02326 0.92007 1.25870 0.95030 0.98017 1.00560 1.70085 1.39406 1.11891 1.36040 0.85362 0.78096 0.78184 0.79154 1.18861 1.20283 1.20547 1.21150 1.00801 0.89988 0.92242 1.19644 0.94511 0.95124 0.96669 1.21168 0.99747 0.93513 0.95571 1.21280 0.95544 0.95586 0.99326 1.18471 0.94759 0.94235 0.96471 1.22404 0.98357 0.94486 0.99590 1.22634 0.90585 0.99937 0.93937 1.66731 1.35136 1.03038 1.16336 1.21950 0.89751 0.90392 0.96233 1.98400 1.61610 1.64754 1.75267 1.18592 0.94868 0.95419 1.01936 1.20911 0.96823 0.93798 1.00207 0.91214 0.92392 0.96893 0.97087 1.01818 0.92675 0.89874 0.94729 0.84035 0.80959 0.79714 0.78929 0.85370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.57 8.91 127.69 1.14 2.71 16 2 N -0.54 -22.88 4.74 -931.65 -4.42 -27.30 16 3 C 0.21 10.84 4.72 85.56 0.40 11.24 16 4 C -0.52 -29.33 8.46 25.60 0.22 -29.12 16 5 H 0.06 3.43 7.12 -2.91 -0.02 3.41 16 6 C 0.00 0.18 5.46 84.65 0.46 0.65 16 7 N -0.93 -55.60 13.29 21.45 0.28 -55.32 16 8 Si 0.97 43.99 29.54 68.60 2.03 46.02 16 9 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 12 C 0.09 2.96 5.09 85.56 0.44 3.40 16 13 C -0.06 -1.70 4.87 -20.07 -0.10 -1.79 16 14 C -0.08 -1.93 9.59 22.07 0.21 -1.71 16 15 C -0.10 -1.88 9.81 22.28 0.22 -1.66 16 16 C -0.03 -0.72 5.75 -21.29 -0.12 -0.84 16 17 C -0.13 -1.94 9.88 22.39 0.22 -1.72 16 18 C 0.07 1.23 11.06 84.08 0.93 2.16 16 19 N -0.50 -12.25 10.29 -186.39 -1.92 -14.17 16 20 C 0.19 5.11 7.36 85.34 0.63 5.74 16 21 Cl -0.03 -0.73 27.77 -2.72 -0.08 -0.81 16 22 C -0.10 -2.74 5.74 -21.29 -0.12 -2.86 16 23 C -0.10 -2.71 7.30 22.30 0.16 -2.55 16 24 H 0.07 2.42 6.15 -2.39 -0.01 2.40 16 25 H 0.06 2.47 6.76 -2.39 -0.02 2.45 16 26 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.01 0.61 7.93 -2.39 -0.02 0.59 16 28 H -0.04 -2.05 8.12 -2.38 -0.02 -2.07 16 29 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 30 H 0.08 2.80 7.87 -2.39 -0.02 2.78 16 31 H 0.03 1.20 8.05 -2.39 -0.02 1.18 16 32 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 33 H 0.17 1.89 8.06 -2.91 -0.02 1.86 16 34 H 0.19 1.18 8.06 -2.91 -0.02 1.16 16 35 H 0.19 1.83 8.06 -2.91 -0.02 1.80 16 36 H 0.13 3.63 7.00 -2.91 -0.02 3.61 16 Total: -1.00 -67.03 318.63 1.67 -65.35 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: 1.09 Total: 2.57 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: 4.69 Total: -16.35 kcal Atomic # 7 Polarization: -90.73 SS G_CDS: -6.05 Total: -96.78 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -0.08 Total: -0.81 kcal Total: -67.03 1.67 -65.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231974444.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.631 kcal (2) G-P(sol) polarization free energy of solvation -67.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds