Wall clock time and date at job start Tue Mar 31 2020 05:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 120.00455 * 2 1 4 4 H 1.08998 * 109.47149 * 245.00191 * 3 2 1 5 5 O 1.42904 * 109.47061 * 5.00407 * 3 2 1 6 6 C 1.35628 * 117.00183 * 271.91792 * 5 3 2 7 7 C 1.38671 * 120.15916 * 5.55501 * 6 5 3 8 8 C 1.38091 * 120.09227 * 180.02562 * 7 6 5 9 9 C 1.38683 * 120.41691 * 359.69407 * 8 7 6 10 10 C 1.37709 * 120.32015 * 0.56187 * 9 8 7 11 11 C 1.39850 * 119.89698 * 359.46570 * 10 9 8 12 12 C 1.47531 * 120.19798 * 180.23261 * 11 10 9 13 13 O 1.21810 * 119.99404 * 180.02562 * 12 11 10 14 14 C 1.41827 * 120.00414 * 0.02562 * 12 11 10 15 15 H 1.07996 * 119.99977 * 0.02562 * 14 12 11 16 16 C 1.40323 * 119.99810 * 180.02562 * 14 12 11 17 17 N 1.30539 * 120.00568 * 359.97438 * 16 14 12 18 18 Si 1.86808 * 119.99632 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47171 * 59.99831 * 18 16 14 20 20 H 1.48506 * 109.46605 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47233 * 299.99832 * 18 16 14 22 22 C 1.50700 * 109.46955 * 125.00295 * 3 2 1 23 23 O 1.20826 * 120.00075 * 245.00375 * 22 3 2 24 24 O 1.34231 * 120.00293 * 64.99954 * 22 3 2 25 25 C 1.45196 * 117.00058 * 179.97438 * 24 22 3 26 26 H 1.07995 * 120.00176 * 179.97438 * 1 2 3 27 27 H 1.08004 * 119.99722 * 359.97438 * 1 2 3 28 28 H 1.08007 * 119.99211 * 180.02562 * 2 1 3 29 29 H 1.08004 * 119.95782 * 359.97438 * 7 6 5 30 30 H 1.08001 * 119.79121 * 179.97438 * 8 7 6 31 31 H 1.08003 * 119.84121 * 180.27735 * 9 8 7 32 32 H 1.07996 * 120.05031 * 179.74204 * 10 9 8 33 33 H 0.96997 * 120.00580 * 180.02562 * 17 16 14 34 34 H 1.09002 * 109.47166 * 60.00550 * 25 24 22 35 35 H 1.09007 * 109.46851 * 179.97438 * 25 24 22 36 36 H 1.08993 * 109.47542 * 300.00521 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 2.6214 1.4025 -0.9314 5 8 1.1395 2.3887 0.1175 6 6 0.6193 2.8820 -1.0338 7 6 0.8973 2.2653 -2.2443 8 6 0.3675 2.7691 -3.4158 9 6 -0.4501 3.8891 -3.3921 10 6 -0.7331 4.5180 -2.2001 11 6 -0.2032 4.0194 -1.0058 12 6 -0.5062 4.6850 0.2754 13 8 -0.0422 4.2479 1.3134 14 6 -1.3377 5.8338 0.2987 15 1 -1.7493 6.2211 -0.6216 16 6 -1.6254 6.4671 1.5174 17 7 -1.1282 5.9987 2.6298 18 14 -2.7211 7.9798 1.5480 19 1 -4.0569 7.6346 0.9989 20 1 -2.8693 8.4553 2.9470 21 1 -2.1085 9.0515 0.7226 22 6 3.0206 1.3324 1.1638 23 8 2.8667 2.1352 2.0537 24 8 4.0438 0.4650 1.2120 25 6 4.9259 0.5493 2.3623 26 1 -0.5400 -0.9352 -0.0004 27 1 -0.5400 0.9354 0.0004 28 1 1.8499 -0.9354 -0.0004 29 1 1.5298 1.3903 -2.2711 30 1 0.5875 2.2852 -4.3560 31 1 -0.8632 4.2726 -4.3134 32 1 -1.3669 5.3923 -2.1872 33 1 -1.3274 6.4362 3.4723 34 1 4.3526 0.3767 3.2732 35 1 5.7075 -0.2057 2.2768 36 1 5.3794 1.5397 2.4006 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233524051.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:14 Heat of formation + Delta-G solvation = -96.678474 kcal Electronic energy + Delta-G solvation = -23052.156684 eV Core-core repulsion = 19468.568152 eV Total energy + Delta-G solvation = -3583.588532 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.103 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.62420 -39.52905 -37.34900 -36.12939 -35.93689 -33.47254 -32.52780 -30.57105 -29.58010 -28.63489 -26.90718 -26.37049 -22.95912 -22.04900 -21.24617 -19.83297 -19.62658 -17.67915 -17.30771 -16.71598 -16.52682 -16.38792 -15.62768 -15.40142 -14.79003 -14.48648 -13.89221 -13.76389 -13.31597 -13.23033 -13.11657 -12.72187 -12.43755 -12.14089 -11.89204 -11.60157 -11.35313 -11.34110 -11.23508 -10.90301 -10.77552 -10.69684 -10.58404 -10.33573 -10.24752 -10.06054 -9.29593 -8.88429 -8.23024 -7.53217 -7.28601 -6.16475 -4.77770 1.77615 1.94628 2.05256 2.43350 2.67571 3.12516 3.17737 3.19479 3.86247 4.07437 4.08008 4.66772 4.73173 4.86768 4.97754 5.12092 5.20768 5.28666 5.37219 5.40135 5.51363 5.63199 5.88297 5.91846 5.95745 6.13797 6.25704 6.41384 6.63947 6.64322 6.74267 6.86186 6.91257 7.13238 7.34209 7.41722 7.89831 8.02807 8.11455 8.90205 8.94633 10.44897 10.68197 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.015045 B = 0.005690 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.607558 B = 4920.050796 C = 6265.276026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.201 4.201 3 C 0.121 3.879 4 H 0.111 0.889 5 O -0.239 6.239 6 C 0.140 3.860 7 C -0.224 4.224 8 C -0.093 4.093 9 C -0.170 4.170 10 C -0.060 4.060 11 C -0.127 4.127 12 C 0.385 3.615 13 O -0.507 6.507 14 C -0.522 4.522 15 H 0.071 0.929 16 C 0.080 3.920 17 N -0.735 5.735 18 Si 0.904 3.096 19 H -0.265 1.265 20 H -0.279 1.279 21 H -0.265 1.265 22 C 0.460 3.540 23 O -0.456 6.456 24 O -0.362 6.362 25 C 0.037 3.963 26 H 0.106 0.894 27 H 0.113 0.887 28 H 0.129 0.871 29 H 0.122 0.878 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.136 0.864 33 H 0.273 0.727 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.196 -10.342 -7.879 14.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.219 4.219 3 C 0.062 3.938 4 H 0.129 0.871 5 O -0.150 6.150 6 C 0.095 3.905 7 C -0.243 4.243 8 C -0.111 4.111 9 C -0.188 4.188 10 C -0.078 4.078 11 C -0.129 4.129 12 C 0.278 3.722 13 O -0.394 6.394 14 C -0.554 4.554 15 H 0.089 0.911 16 C -0.142 4.142 17 N -0.364 5.364 18 Si 0.728 3.272 19 H -0.190 1.190 20 H -0.204 1.204 21 H -0.190 1.190 22 C 0.299 3.701 23 O -0.338 6.338 24 O -0.280 6.280 25 C -0.057 4.057 26 H 0.124 0.876 27 H 0.131 0.869 28 H 0.147 0.853 29 H 0.139 0.861 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.154 0.846 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.119 0.881 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.411 -10.263 -6.652 13.809 hybrid contribution -0.359 0.646 -0.196 0.765 sum 6.052 -9.617 -6.847 13.267 Atomic orbital electron populations 1.24114 0.96023 1.03222 0.94426 1.23010 0.96679 0.96316 1.05918 1.20450 0.89922 0.87814 0.95579 0.87133 1.86595 1.54783 1.45850 1.27803 1.19396 0.94059 0.92989 0.84101 1.21105 1.07258 1.03283 0.92630 1.20801 0.97258 0.96322 0.96761 1.20995 1.01971 0.97876 0.97971 1.21432 0.97047 0.98724 0.90594 1.21643 0.97685 0.93839 0.99711 1.18033 0.83520 0.85704 0.84966 1.90628 1.50817 1.64999 1.32914 1.20844 1.28929 1.11787 0.93817 0.91080 1.25952 0.95200 0.97869 0.95218 1.69969 1.32727 1.35062 0.98667 0.86488 0.80917 0.81784 0.78043 1.19005 1.20381 1.19014 1.23081 0.80415 0.78868 0.87715 1.90828 1.70613 1.35416 1.36940 1.86431 1.38475 1.56356 1.46691 1.23253 0.92363 1.03166 0.86913 0.87566 0.86869 0.85308 0.86072 0.86715 0.86622 0.84592 0.91584 0.91798 0.88120 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 13.60 29.01 0.39 -1.74 16 2 C -0.20 -2.89 8.95 -36.03 -0.32 -3.21 16 3 C 0.12 2.09 2.69 -29.04 -0.08 2.02 16 4 H 0.11 1.60 6.11 -51.93 -0.32 1.28 16 5 O -0.24 -5.46 6.36 -48.82 -0.31 -5.77 16 6 C 0.14 3.02 5.44 -38.61 -0.21 2.81 16 7 C -0.22 -3.79 8.54 -39.48 -0.34 -4.13 16 8 C -0.09 -1.43 10.04 -39.47 -0.40 -1.82 16 9 C -0.17 -2.77 10.02 -39.61 -0.40 -3.16 16 10 C -0.06 -1.19 9.43 -39.17 -0.37 -1.56 16 11 C -0.13 -3.05 5.90 -104.69 -0.62 -3.67 16 12 C 0.38 11.25 6.91 -34.42 -0.24 11.02 16 13 O -0.51 -16.83 13.71 -16.74 -0.23 -17.06 16 14 C -0.52 -14.65 8.86 -37.43 -0.33 -14.98 16 15 H 0.07 1.78 6.02 -52.49 -0.32 1.47 16 16 C 0.08 2.23 5.50 -17.32 -0.10 2.13 16 17 N -0.74 -22.00 11.73 55.57 0.65 -21.35 16 18 Si 0.90 19.75 29.56 -169.99 -5.03 14.73 16 19 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 20 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 C 0.46 8.43 7.27 36.01 0.26 8.69 16 23 O -0.46 -10.61 16.26 -25.46 -0.41 -11.02 16 24 O -0.36 -5.15 10.55 -39.26 -0.41 -5.57 16 25 C 0.04 0.41 10.56 101.05 1.07 1.48 16 26 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 27 H 0.11 2.13 6.11 -52.48 -0.32 1.81 16 28 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 29 H 0.12 1.70 5.75 -52.48 -0.30 1.40 16 30 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.12 1.52 8.06 -52.48 -0.42 1.09 16 32 H 0.14 2.60 6.20 -52.49 -0.33 2.27 16 33 H 0.27 7.38 8.29 -40.82 -0.34 7.05 16 34 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 LS Contribution 318.33 15.07 4.80 4.80 Total: -1.00 -37.01 318.33 -6.29 -43.30 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -3.67 Total: 4.07 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -1.67 Total: -6.13 kcal Atomic # 7 Polarization: -22.00 SS G_CDS: 0.65 Total: -21.35 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -1.37 Total: -39.41 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.03 Total: 14.73 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -37.01 -6.29 -43.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233524051.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.383 kcal (2) G-P(sol) polarization free energy of solvation -37.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds