Wall clock time and date at job start Tue Mar 31 2020 05:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 120.00455 * 2 1 4 4 H 1.08998 * 109.47149 * 245.00191 * 3 2 1 5 5 O 1.42904 * 109.47061 * 5.00407 * 3 2 1 6 6 C 1.35628 * 117.00183 * 271.91792 * 5 3 2 7 7 C 1.38671 * 120.15916 * 5.55501 * 6 5 3 8 8 C 1.38091 * 120.09227 * 180.02562 * 7 6 5 9 9 C 1.38683 * 120.41691 * 359.69407 * 8 7 6 10 10 C 1.37709 * 120.32015 * 0.56187 * 9 8 7 11 11 C 1.39850 * 119.89698 * 359.46570 * 10 9 8 12 12 C 1.47531 * 120.19798 * 180.23261 * 11 10 9 13 13 O 1.21810 * 119.99404 * 180.02562 * 12 11 10 14 14 C 1.41827 * 120.00414 * 0.02562 * 12 11 10 15 15 H 1.07996 * 119.99977 * 0.02562 * 14 12 11 16 16 C 1.40323 * 119.99810 * 180.02562 * 14 12 11 17 17 N 1.30539 * 120.00568 * 359.97438 * 16 14 12 18 18 Si 1.86808 * 119.99632 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47171 * 59.99831 * 18 16 14 20 20 H 1.48506 * 109.46605 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47233 * 299.99832 * 18 16 14 22 22 C 1.50700 * 109.46955 * 125.00295 * 3 2 1 23 23 O 1.20826 * 120.00075 * 245.00375 * 22 3 2 24 24 O 1.34231 * 120.00293 * 64.99954 * 22 3 2 25 25 C 1.45196 * 117.00058 * 179.97438 * 24 22 3 26 26 H 1.07995 * 120.00176 * 179.97438 * 1 2 3 27 27 H 1.08004 * 119.99722 * 359.97438 * 1 2 3 28 28 H 1.08007 * 119.99211 * 180.02562 * 2 1 3 29 29 H 1.08004 * 119.95782 * 359.97438 * 7 6 5 30 30 H 1.08001 * 119.79121 * 179.97438 * 8 7 6 31 31 H 1.08003 * 119.84121 * 180.27735 * 9 8 7 32 32 H 1.07996 * 120.05031 * 179.74204 * 10 9 8 33 33 H 0.96997 * 120.00580 * 180.02562 * 17 16 14 34 34 H 1.09002 * 109.47166 * 60.00550 * 25 24 22 35 35 H 1.09007 * 109.46851 * 179.97438 * 25 24 22 36 36 H 1.08993 * 109.47542 * 300.00521 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 2.6214 1.4025 -0.9314 5 8 1.1395 2.3887 0.1175 6 6 0.6193 2.8820 -1.0338 7 6 0.8973 2.2653 -2.2443 8 6 0.3675 2.7691 -3.4158 9 6 -0.4501 3.8891 -3.3921 10 6 -0.7331 4.5180 -2.2001 11 6 -0.2032 4.0194 -1.0058 12 6 -0.5062 4.6850 0.2754 13 8 -0.0422 4.2479 1.3134 14 6 -1.3377 5.8338 0.2987 15 1 -1.7493 6.2211 -0.6216 16 6 -1.6254 6.4671 1.5174 17 7 -1.1282 5.9987 2.6298 18 14 -2.7211 7.9798 1.5480 19 1 -4.0569 7.6346 0.9989 20 1 -2.8693 8.4553 2.9470 21 1 -2.1085 9.0515 0.7226 22 6 3.0206 1.3324 1.1638 23 8 2.8667 2.1352 2.0537 24 8 4.0438 0.4650 1.2120 25 6 4.9259 0.5493 2.3623 26 1 -0.5400 -0.9352 -0.0004 27 1 -0.5400 0.9354 0.0004 28 1 1.8499 -0.9354 -0.0004 29 1 1.5298 1.3903 -2.2711 30 1 0.5875 2.2852 -4.3560 31 1 -0.8632 4.2726 -4.3134 32 1 -1.3669 5.3923 -2.1872 33 1 -1.3274 6.4362 3.4723 34 1 4.3526 0.3767 3.2732 35 1 5.7075 -0.2057 2.2768 36 1 5.3794 1.5397 2.4006 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233524051.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:14 Heat of formation + Delta-G solvation = -121.225597 kcal Electronic energy + Delta-G solvation = -23053.221127 eV Core-core repulsion = 19468.568152 eV Total energy + Delta-G solvation = -3584.652975 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.103 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.04348 -40.98088 -38.93797 -37.90284 -37.50798 -34.84767 -34.57570 -32.16563 -30.96863 -29.92593 -28.72979 -27.71159 -24.59877 -23.51873 -22.56058 -21.60541 -20.92960 -19.14601 -18.68424 -18.43696 -17.97522 -17.86696 -17.25843 -16.90908 -16.20156 -16.07379 -15.34619 -15.04208 -14.95247 -14.76024 -14.47596 -14.28458 -14.10945 -13.63522 -13.26533 -13.22437 -13.06300 -12.75396 -12.73053 -12.57356 -12.19156 -12.12594 -12.09926 -11.91777 -11.83777 -11.68343 -10.95384 -10.51435 -9.72228 -9.44540 -9.04704 -8.25469 -7.00310 0.26402 0.55475 0.77295 1.05974 1.35598 1.40225 1.46041 1.51814 2.21747 2.30994 2.50787 2.91457 3.48931 3.62377 3.73074 3.82977 4.01524 4.05434 4.25944 4.26786 4.29725 4.34291 4.57042 4.60034 4.64186 4.79727 4.86319 5.12861 5.16198 5.23500 5.38169 5.43018 5.53200 5.63693 5.71787 5.95382 6.05277 6.47254 6.63432 6.75171 6.90423 8.36549 8.58811 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.015045 B = 0.005690 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.607558 B = 4920.050796 C = 6265.276026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.187 4.187 3 C 0.107 3.893 4 H 0.143 0.857 5 O -0.286 6.286 6 C 0.126 3.874 7 C -0.217 4.217 8 C -0.068 4.068 9 C -0.161 4.161 10 C -0.064 4.064 11 C -0.189 4.189 12 C 0.361 3.639 13 O -0.569 6.569 14 C -0.552 4.552 15 H 0.094 0.906 16 C 0.021 3.979 17 N -0.796 5.796 18 Si 0.996 3.004 19 H -0.249 1.249 20 H -0.273 1.273 21 H -0.250 1.250 22 C 0.465 3.535 23 O -0.522 6.522 24 O -0.344 6.344 25 C 0.027 3.973 26 H 0.142 0.858 27 H 0.066 0.934 28 H 0.173 0.827 29 H 0.155 0.845 30 H 0.169 0.831 31 H 0.159 0.841 32 H 0.133 0.867 33 H 0.278 0.722 34 H 0.056 0.944 35 H 0.151 0.849 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.438 -11.753 -11.650 17.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.204 4.204 3 C 0.049 3.951 4 H 0.160 0.840 5 O -0.199 6.199 6 C 0.081 3.919 7 C -0.235 4.235 8 C -0.086 4.086 9 C -0.179 4.179 10 C -0.082 4.082 11 C -0.190 4.190 12 C 0.258 3.742 13 O -0.460 6.460 14 C -0.583 4.583 15 H 0.112 0.888 16 C -0.197 4.197 17 N -0.425 5.425 18 Si 0.814 3.186 19 H -0.172 1.172 20 H -0.198 1.198 21 H -0.174 1.174 22 C 0.307 3.693 23 O -0.409 6.409 24 O -0.260 6.260 25 C -0.066 4.066 26 H 0.160 0.840 27 H 0.085 0.915 28 H 0.191 0.809 29 H 0.173 0.827 30 H 0.187 0.813 31 H 0.177 0.823 32 H 0.151 0.849 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.168 0.832 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.667 -11.704 -10.480 17.066 hybrid contribution -0.301 0.943 0.887 1.328 sum 6.367 -10.761 -9.594 15.760 Atomic orbital electron populations 1.24118 0.96490 1.02706 0.95543 1.23231 0.96297 0.96165 1.04740 1.20932 0.89834 0.87996 0.96289 0.83979 1.86528 1.56081 1.47744 1.29567 1.19593 0.94018 0.92856 0.85450 1.21458 1.07157 1.03717 0.91214 1.21459 0.94242 0.94870 0.98049 1.21420 1.01240 0.97531 0.97733 1.21488 0.96910 0.98997 0.90824 1.21252 1.02333 0.96783 0.98665 1.18830 0.82717 0.86136 0.86508 1.90564 1.53051 1.66757 1.35655 1.21406 1.29395 1.12263 0.95273 0.88824 1.27299 0.96434 1.01756 0.94199 1.70170 1.35032 1.37543 0.99798 0.85114 0.78634 0.76367 0.78516 1.17237 1.19758 1.17400 1.23491 0.80733 0.78024 0.87031 1.90811 1.72408 1.38256 1.39421 1.86434 1.37423 1.54495 1.47662 1.23654 0.92601 1.04563 0.85751 0.83970 0.91506 0.80948 0.82729 0.81341 0.82342 0.84886 0.91216 0.92480 0.83160 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.52 13.60 67.78 0.92 -3.60 16 2 C -0.19 -5.04 8.95 25.65 0.23 -4.81 16 3 C 0.11 3.70 2.69 29.10 0.08 3.78 16 4 H 0.14 3.83 6.11 -2.39 -0.01 3.81 16 5 O -0.29 -13.89 6.36 -60.49 -0.38 -14.28 16 6 C 0.13 5.61 5.44 22.90 0.12 5.74 16 7 C -0.22 -6.79 8.54 22.34 0.19 -6.60 16 8 C -0.07 -1.76 10.04 22.34 0.22 -1.54 16 9 C -0.16 -4.68 10.02 22.25 0.22 -4.45 16 10 C -0.06 -2.55 9.43 22.53 0.21 -2.34 16 11 C -0.19 -9.55 5.90 -19.91 -0.12 -9.67 16 12 C 0.36 22.86 6.91 25.61 0.18 23.03 16 13 O -0.57 -41.46 13.71 16.18 0.22 -41.24 16 14 C -0.55 -32.83 8.86 23.67 0.21 -32.62 16 15 H 0.09 4.88 6.02 -2.91 -0.02 4.87 16 16 C 0.02 1.20 5.50 85.39 0.47 1.67 16 17 N -0.80 -51.09 11.73 21.88 0.26 -50.84 16 18 Si 1.00 41.81 29.56 68.60 2.03 43.84 16 19 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 20 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 21 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 22 C 0.47 17.48 7.27 71.24 0.52 18.00 16 23 O -0.52 -26.12 16.26 28.38 0.46 -25.66 16 24 O -0.34 -9.38 10.55 -51.43 -0.54 -9.92 16 25 C 0.03 0.58 10.56 113.37 1.20 1.77 16 26 H 0.14 3.09 8.06 -2.91 -0.02 3.06 16 27 H 0.07 2.68 6.11 -2.91 -0.02 2.66 16 28 H 0.17 3.13 8.06 -2.91 -0.02 3.10 16 29 H 0.16 3.68 5.75 -2.91 -0.02 3.66 16 30 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 31 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 32 H 0.13 5.15 6.20 -2.91 -0.02 5.14 16 33 H 0.28 16.08 8.29 -92.71 -0.77 15.31 16 34 H 0.06 1.31 8.13 -2.39 -0.02 1.30 16 35 H 0.15 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.06 1.31 8.13 -2.39 -0.02 1.29 16 Total: -1.00 -94.21 318.33 7.81 -86.40 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 1.12 Total: 23.33 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: 4.66 Total: -11.63 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 0.26 Total: -50.84 kcal Atomic # 8 Polarization: -90.85 SS G_CDS: -0.24 Total: -91.10 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -94.21 7.81 -86.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233524051.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.825 kcal (2) G-P(sol) polarization free energy of solvation -94.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds