Wall clock time and date at job start Tue Mar 31 2020 05:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00193 * 2 1 4 4 H 1.09000 * 109.46847 * 245.27240 * 3 2 1 5 5 O 1.42903 * 109.46811 * 5.27381 * 3 2 1 6 6 C 1.35665 * 116.99477 * 271.91813 * 5 3 2 7 7 C 1.39162 * 119.90749 * 5.09382 * 6 5 3 8 8 C 1.37597 * 120.09329 * 179.76325 * 7 6 5 9 9 C 1.39947 * 119.89944 * 0.50514 * 8 7 6 10 10 C 1.47578 * 120.08957 * 179.72579 * 9 8 7 11 11 O 1.21817 * 119.99783 * 180.02562 * 10 9 8 12 12 C 1.41763 * 119.99930 * 0.02562 * 10 9 8 13 13 H 1.07995 * 120.00052 * 6.82413 * 12 10 9 14 14 C 1.40345 * 119.99942 * 186.81916 * 12 10 9 15 15 N 1.30529 * 119.99748 * 353.88623 * 14 12 10 16 16 Si 1.86794 * 119.99870 * 173.88619 * 14 12 10 17 17 H 1.48500 * 109.47058 * 94.98542 * 16 14 12 18 18 H 1.48502 * 109.47049 * 214.98726 * 16 14 12 19 19 H 1.48498 * 109.47300 * 334.98776 * 16 14 12 20 20 C 1.39949 * 119.81704 * 359.74719 * 9 8 7 21 21 C 1.37586 * 119.90750 * 359.97438 * 20 9 8 22 22 C 1.50704 * 109.47144 * 125.26999 * 3 2 1 23 23 O 1.20815 * 119.99908 * 245.00147 * 22 3 2 24 24 O 1.34231 * 119.99895 * 65.00225 * 22 3 2 25 25 C 1.45191 * 117.00273 * 180.02562 * 24 22 3 26 26 H 1.08007 * 120.00362 * 179.72377 * 1 2 3 27 27 H 1.08004 * 120.00048 * 359.73039 * 1 2 3 28 28 H 1.08004 * 119.99520 * 180.26905 * 2 1 3 29 29 H 1.07998 * 119.95198 * 359.97438 * 7 6 5 30 30 H 1.07994 * 120.04661 * 180.25538 * 8 7 6 31 31 H 0.97001 * 119.99453 * 179.97438 * 15 14 12 32 32 H 1.08004 * 120.04375 * 180.02562 * 20 9 8 33 33 H 1.07994 * 119.95790 * 179.97438 * 21 20 9 34 34 H 1.08997 * 109.47376 * 59.99582 * 25 24 22 35 35 H 1.09003 * 109.47633 * 179.97438 * 25 24 22 36 36 H 1.09001 * 109.46791 * 299.99900 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 2.6174 1.4047 -0.9335 5 8 1.1398 2.3884 0.1238 6 6 0.6149 2.8844 -1.0246 7 6 0.9003 2.2699 -2.2401 8 6 0.3660 2.7668 -3.4067 9 6 -0.4569 3.8982 -3.3707 10 6 -1.0272 4.4384 -4.6200 11 8 -1.7429 5.4236 -4.5868 12 6 -0.7422 3.8107 -5.8588 13 1 -0.2006 2.8766 -5.8788 14 6 -1.1640 4.4032 -7.0591 15 7 -1.9200 5.4669 -7.0314 16 14 -0.6435 3.6695 -8.6961 17 1 -1.7042 2.7539 -9.1879 18 1 -0.4338 4.7594 -9.6827 19 1 0.6214 2.9119 -8.5193 20 6 -0.7370 4.5163 -2.1467 21 6 -0.2033 4.0094 -0.9842 22 6 3.0252 1.3299 1.1600 23 8 2.8750 2.1305 2.0522 24 8 4.0487 0.4624 1.2020 25 6 4.9348 0.5432 2.3493 26 1 -0.5401 -0.9353 -0.0045 27 1 -0.5400 0.9353 0.0044 28 1 1.8499 -0.9354 -0.0044 29 1 1.5392 1.3996 -2.2675 30 1 0.5846 2.2869 -4.3491 31 1 -2.2113 5.8765 -7.8610 32 1 -1.3719 5.3894 -2.1146 33 1 -0.4186 4.4859 -0.0393 34 1 4.3648 0.3680 3.2617 35 1 5.7162 -0.2113 2.2589 36 1 5.3884 1.5336 2.3889 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233526458.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:20 Heat of formation + Delta-G solvation = -105.231262 kcal Electronic energy + Delta-G solvation = -22066.797844 eV Core-core repulsion = 18482.838435 eV Total energy + Delta-G solvation = -3583.959409 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.103 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.04521 -39.81310 -37.79935 -36.64581 -35.80611 -33.79808 -32.72747 -30.66447 -29.77803 -29.05698 -27.24353 -26.44298 -22.80500 -22.44667 -21.54312 -20.34394 -19.47042 -18.18124 -17.68413 -17.09480 -16.90445 -16.66517 -16.00673 -15.56934 -15.01203 -14.31973 -14.06123 -14.00917 -13.58851 -13.49746 -13.09741 -12.92658 -12.70893 -12.49704 -12.30296 -12.04533 -11.68916 -11.55189 -11.31687 -11.17307 -11.11003 -10.92344 -10.67517 -10.49624 -10.38087 -10.01420 -9.62231 -9.00505 -8.49120 -7.58807 -7.51963 -6.35299 -4.93960 1.63489 1.73931 1.92837 1.97718 2.29895 3.01897 3.10415 3.13945 3.44795 3.95199 3.98058 4.36351 4.48205 4.60699 4.68738 4.79217 4.87801 5.09027 5.19239 5.28844 5.32181 5.68130 5.75401 5.80019 5.97550 5.99711 6.08049 6.16636 6.34217 6.43942 6.56676 6.74004 6.98272 7.19065 7.21125 7.31025 7.46574 7.69675 7.99386 8.75325 8.79874 10.27021 10.48869 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.026613 B = 0.003358 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.848360 B = 8335.434474 C = 8776.082726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.202 4.202 3 C 0.128 3.872 4 H 0.121 0.879 5 O -0.289 6.289 6 C 0.103 3.897 7 C -0.217 4.217 8 C -0.056 4.056 9 C -0.130 4.130 10 C 0.388 3.612 11 O -0.543 6.543 12 C -0.517 4.517 13 H 0.074 0.926 14 C 0.079 3.921 15 N -0.734 5.734 16 Si 0.906 3.094 17 H -0.269 1.269 18 H -0.276 1.276 19 H -0.260 1.260 20 C -0.057 4.057 21 C -0.154 4.154 22 C 0.471 3.529 23 O -0.483 6.483 24 O -0.354 6.354 25 C 0.036 3.964 26 H 0.109 0.891 27 H 0.111 0.889 28 H 0.133 0.867 29 H 0.122 0.878 30 H 0.134 0.866 31 H 0.274 0.726 32 H 0.134 0.866 33 H 0.124 0.876 34 H 0.064 0.936 35 H 0.104 0.896 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.591 -12.513 12.018 20.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.220 4.220 3 C 0.070 3.930 4 H 0.138 0.862 5 O -0.204 6.204 6 C 0.059 3.941 7 C -0.235 4.235 8 C -0.074 4.074 9 C -0.132 4.132 10 C 0.284 3.716 11 O -0.433 6.433 12 C -0.549 4.549 13 H 0.092 0.908 14 C -0.144 4.144 15 N -0.363 5.363 16 Si 0.730 3.270 17 H -0.195 1.195 18 H -0.201 1.201 19 H -0.184 1.184 20 C -0.075 4.075 21 C -0.173 4.173 22 C 0.311 3.689 23 O -0.367 6.367 24 O -0.271 6.271 25 C -0.057 4.057 26 H 0.127 0.873 27 H 0.129 0.871 28 H 0.150 0.850 29 H 0.140 0.860 30 H 0.152 0.848 31 H 0.086 0.914 32 H 0.152 0.848 33 H 0.142 0.858 34 H 0.083 0.917 35 H 0.123 0.877 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.093 -11.578 12.495 19.801 hybrid contribution 0.594 -0.594 -0.715 1.104 sum 10.688 -12.173 11.780 20.029 Atomic orbital electron populations 1.24098 0.95906 1.03293 0.94333 1.23013 0.96742 0.96279 1.05995 1.20423 0.89379 0.87106 0.96061 0.86170 1.86052 1.56455 1.47729 1.30118 1.19095 0.96436 0.94598 0.83980 1.21149 1.06689 1.03172 0.92511 1.21356 0.94094 0.94699 0.97258 1.21881 0.98019 0.95576 0.97684 1.18071 0.82013 0.85626 0.85855 1.90507 1.37322 1.27568 1.87862 1.20920 1.33777 1.08302 0.91855 0.90767 1.26009 0.93143 0.94153 1.01100 1.69962 1.22207 1.15275 1.28852 0.86364 0.80014 0.79539 0.81097 1.19459 1.20080 1.18428 1.21244 0.96780 0.98756 0.90703 1.20304 1.01604 0.96071 0.99283 1.23114 0.80299 0.78297 0.87140 1.90702 1.71846 1.36612 1.37584 1.86463 1.37977 1.55822 1.46848 1.23320 0.92290 1.03485 0.86647 0.87269 0.87094 0.84953 0.86002 0.84843 0.91448 0.84815 0.85777 0.91727 0.87738 0.91663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 13.60 29.02 0.39 -1.15 16 2 C -0.20 -2.13 8.96 -36.03 -0.32 -2.46 16 3 C 0.13 1.61 2.69 -29.03 -0.08 1.53 16 4 H 0.12 1.33 6.07 -51.93 -0.32 1.01 16 5 O -0.29 -4.55 8.27 -38.60 -0.32 -4.87 16 6 C 0.10 1.73 5.43 -38.89 -0.21 1.52 16 7 C -0.22 -3.54 8.54 -39.47 -0.34 -3.88 16 8 C -0.06 -1.08 9.43 -39.18 -0.37 -1.45 16 9 C -0.13 -2.99 5.89 -104.81 -0.62 -3.61 16 10 C 0.39 10.82 6.90 -34.43 -0.24 10.58 16 11 O -0.54 -17.08 14.92 5.08 0.08 -17.00 16 12 C -0.52 -13.90 8.83 -37.44 -0.33 -14.23 16 13 H 0.07 1.79 6.06 -52.49 -0.32 1.47 16 14 C 0.08 2.10 5.49 -17.31 -0.10 2.00 16 15 N -0.73 -20.89 11.76 55.57 0.65 -20.24 16 16 Si 0.91 18.85 29.57 -169.99 -5.03 13.82 16 17 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 18 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 19 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 20 C -0.06 -1.18 9.59 -39.18 -0.38 -1.55 16 21 C -0.15 -2.78 9.97 -39.47 -0.39 -3.17 16 22 C 0.47 6.07 7.27 36.01 0.26 6.34 16 23 O -0.48 -7.73 16.25 -25.45 -0.41 -8.15 16 24 O -0.35 -3.63 10.55 -39.26 -0.41 -4.04 16 25 C 0.04 0.26 10.56 101.05 1.07 1.33 16 26 H 0.11 0.95 8.06 -52.48 -0.42 0.53 16 27 H 0.11 1.47 6.10 -52.48 -0.32 1.15 16 28 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 29 H 0.12 1.61 5.73 -52.49 -0.30 1.31 16 30 H 0.13 2.47 6.21 -52.49 -0.33 2.14 16 31 H 0.27 6.98 8.29 -40.82 -0.34 6.64 16 32 H 0.13 2.84 7.65 -52.48 -0.40 2.44 16 33 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 34 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 35 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 LS Contribution 320.47 15.07 4.83 4.83 Total: -1.00 -34.04 320.47 -5.91 -39.95 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -3.65 Total: 3.91 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -1.64 Total: -8.21 kcal Atomic # 7 Polarization: -20.89 SS G_CDS: 0.65 Total: -20.24 kcal Atomic # 8 Polarization: -32.99 SS G_CDS: -1.07 Total: -34.06 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.04 -5.91 -39.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233526458.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.279 kcal (2) G-P(sol) polarization free energy of solvation -34.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds