Wall clock time and date at job start Tue Mar 31 2020 05:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00193 * 2 1 4 4 H 1.09000 * 109.46847 * 245.27240 * 3 2 1 5 5 O 1.42903 * 109.46811 * 5.27381 * 3 2 1 6 6 C 1.35665 * 116.99477 * 271.91813 * 5 3 2 7 7 C 1.39162 * 119.90749 * 5.09382 * 6 5 3 8 8 C 1.37597 * 120.09329 * 179.76325 * 7 6 5 9 9 C 1.39947 * 119.89944 * 0.50514 * 8 7 6 10 10 C 1.47578 * 120.08957 * 179.72579 * 9 8 7 11 11 O 1.21817 * 119.99783 * 180.02562 * 10 9 8 12 12 C 1.41763 * 119.99930 * 0.02562 * 10 9 8 13 13 H 1.07995 * 120.00052 * 6.82413 * 12 10 9 14 14 C 1.40345 * 119.99942 * 186.81916 * 12 10 9 15 15 N 1.30529 * 119.99748 * 353.88623 * 14 12 10 16 16 Si 1.86794 * 119.99870 * 173.88619 * 14 12 10 17 17 H 1.48500 * 109.47058 * 94.98542 * 16 14 12 18 18 H 1.48502 * 109.47049 * 214.98726 * 16 14 12 19 19 H 1.48498 * 109.47300 * 334.98776 * 16 14 12 20 20 C 1.39949 * 119.81704 * 359.74719 * 9 8 7 21 21 C 1.37586 * 119.90750 * 359.97438 * 20 9 8 22 22 C 1.50704 * 109.47144 * 125.26999 * 3 2 1 23 23 O 1.20815 * 119.99908 * 245.00147 * 22 3 2 24 24 O 1.34231 * 119.99895 * 65.00225 * 22 3 2 25 25 C 1.45191 * 117.00273 * 180.02562 * 24 22 3 26 26 H 1.08007 * 120.00362 * 179.72377 * 1 2 3 27 27 H 1.08004 * 120.00048 * 359.73039 * 1 2 3 28 28 H 1.08004 * 119.99520 * 180.26905 * 2 1 3 29 29 H 1.07998 * 119.95198 * 359.97438 * 7 6 5 30 30 H 1.07994 * 120.04661 * 180.25538 * 8 7 6 31 31 H 0.97001 * 119.99453 * 179.97438 * 15 14 12 32 32 H 1.08004 * 120.04375 * 180.02562 * 20 9 8 33 33 H 1.07994 * 119.95790 * 179.97438 * 21 20 9 34 34 H 1.08997 * 109.47376 * 59.99582 * 25 24 22 35 35 H 1.09003 * 109.47633 * 179.97438 * 25 24 22 36 36 H 1.09001 * 109.46791 * 299.99900 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 2.6174 1.4047 -0.9335 5 8 1.1398 2.3884 0.1238 6 6 0.6149 2.8844 -1.0246 7 6 0.9003 2.2699 -2.2401 8 6 0.3660 2.7668 -3.4067 9 6 -0.4569 3.8982 -3.3707 10 6 -1.0272 4.4384 -4.6200 11 8 -1.7429 5.4236 -4.5868 12 6 -0.7422 3.8107 -5.8588 13 1 -0.2006 2.8766 -5.8788 14 6 -1.1640 4.4032 -7.0591 15 7 -1.9200 5.4669 -7.0314 16 14 -0.6435 3.6695 -8.6961 17 1 -1.7042 2.7539 -9.1879 18 1 -0.4338 4.7594 -9.6827 19 1 0.6214 2.9119 -8.5193 20 6 -0.7370 4.5163 -2.1467 21 6 -0.2033 4.0094 -0.9842 22 6 3.0252 1.3299 1.1600 23 8 2.8750 2.1305 2.0522 24 8 4.0487 0.4624 1.2020 25 6 4.9348 0.5432 2.3493 26 1 -0.5401 -0.9353 -0.0045 27 1 -0.5400 0.9353 0.0044 28 1 1.8499 -0.9354 -0.0044 29 1 1.5392 1.3996 -2.2675 30 1 0.5846 2.2869 -4.3491 31 1 -2.2113 5.8765 -7.8610 32 1 -1.3719 5.3894 -2.1146 33 1 -0.4186 4.4859 -0.0393 34 1 4.3648 0.3680 3.2617 35 1 5.7162 -0.2113 2.2589 36 1 5.3884 1.5336 2.3889 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233526458.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:20 Heat of formation + Delta-G solvation = -126.232730 kcal Electronic energy + Delta-G solvation = -22067.708536 eV Core-core repulsion = 18482.838435 eV Total energy + Delta-G solvation = -3584.870101 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.103 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.10757 -41.01747 -39.42231 -37.81205 -37.41483 -34.82091 -34.74706 -32.16098 -31.25471 -30.10672 -28.67596 -27.70093 -24.41890 -23.81922 -22.56400 -21.74394 -20.85079 -19.32500 -18.77184 -18.54380 -18.10988 -17.88028 -17.41651 -16.95284 -16.26282 -15.97091 -15.51437 -15.09999 -14.81450 -14.68709 -14.44176 -14.31710 -14.26060 -14.01248 -13.42235 -13.26778 -13.10974 -13.02289 -12.82312 -12.54915 -12.44234 -12.15290 -12.03028 -11.88944 -11.76783 -11.60027 -10.97697 -10.49497 -9.96694 -9.61067 -9.13882 -8.34522 -7.05793 0.15429 0.44297 0.76248 0.98294 1.39822 1.40648 1.42681 1.58215 2.19798 2.22660 2.35772 2.83057 3.49456 3.57060 3.71188 3.74275 3.91631 3.99006 4.24012 4.28295 4.31714 4.31931 4.47168 4.51901 4.67395 4.71069 4.92064 5.07013 5.14672 5.18498 5.27441 5.41254 5.50518 5.56054 5.72316 5.75506 5.98500 6.28727 6.54057 6.70995 6.81189 8.25838 8.49988 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.026613 B = 0.003358 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.848360 B = 8335.434474 C = 8776.082726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.194 4.194 3 C 0.116 3.884 4 H 0.143 0.857 5 O -0.300 6.300 6 C 0.125 3.875 7 C -0.200 4.200 8 C -0.049 4.049 9 C -0.172 4.172 10 C 0.364 3.636 11 O -0.601 6.601 12 C -0.542 4.542 13 H 0.100 0.900 14 C 0.021 3.979 15 N -0.790 5.790 16 Si 0.996 3.004 17 H -0.259 1.259 18 H -0.271 1.271 19 H -0.241 1.241 20 C -0.066 4.066 21 C -0.157 4.157 22 C 0.476 3.524 23 O -0.522 6.522 24 O -0.346 6.346 25 C 0.027 3.973 26 H 0.134 0.866 27 H 0.084 0.916 28 H 0.166 0.834 29 H 0.164 0.836 30 H 0.144 0.856 31 H 0.282 0.718 32 H 0.114 0.886 33 H 0.141 0.859 34 H 0.064 0.936 35 H 0.141 0.859 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.257 -16.147 11.907 24.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.212 4.212 3 C 0.059 3.941 4 H 0.160 0.840 5 O -0.214 6.214 6 C 0.080 3.920 7 C -0.218 4.218 8 C -0.068 4.068 9 C -0.173 4.173 10 C 0.264 3.736 11 O -0.496 6.496 12 C -0.572 4.572 13 H 0.118 0.882 14 C -0.198 4.198 15 N -0.419 5.419 16 Si 0.815 3.185 17 H -0.183 1.183 18 H -0.196 1.196 19 H -0.164 1.164 20 C -0.084 4.084 21 C -0.175 4.175 22 C 0.319 3.681 23 O -0.411 6.411 24 O -0.262 6.262 25 C -0.065 4.065 26 H 0.152 0.848 27 H 0.102 0.898 28 H 0.183 0.817 29 H 0.182 0.818 30 H 0.161 0.839 31 H 0.092 0.908 32 H 0.132 0.868 33 H 0.158 0.842 34 H 0.083 0.917 35 H 0.159 0.841 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.791 -15.255 12.407 23.458 hybrid contribution -0.132 0.453 -0.465 0.662 sum 12.659 -14.803 11.942 22.847 Atomic orbital electron populations 1.24177 0.96293 1.03300 0.95002 1.23188 0.96484 0.96242 1.05283 1.20838 0.89305 0.86979 0.97009 0.84042 1.86047 1.57034 1.48880 1.29416 1.19075 0.94775 0.93422 0.84719 1.21411 1.05894 1.03656 0.90866 1.21399 0.93141 0.93332 0.98890 1.21511 1.01230 0.98329 0.96238 1.18821 0.81333 0.85055 0.88376 1.90447 1.40012 1.30002 1.89160 1.21459 1.34123 1.09354 0.92260 0.88246 1.27333 0.92320 0.94142 1.05964 1.70120 1.23786 1.17313 1.30639 0.85021 0.80333 0.78695 0.74499 1.18341 1.19606 1.16372 1.21094 0.97340 0.98589 0.91413 1.20364 1.01611 0.96778 0.98774 1.23179 0.80548 0.77896 0.86503 1.90698 1.72948 1.38341 1.39064 1.86460 1.37319 1.54549 1.47892 1.23673 0.92458 1.04682 0.85731 0.84816 0.89771 0.81676 0.81845 0.83852 0.90784 0.86834 0.84166 0.91746 0.84076 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 13.60 67.78 0.92 -1.97 16 2 C -0.19 -3.31 8.96 25.65 0.23 -3.08 16 3 C 0.12 2.51 2.69 29.10 0.08 2.58 16 4 H 0.14 2.46 6.07 -2.39 -0.01 2.45 16 5 O -0.30 -8.77 8.27 -70.78 -0.59 -9.36 16 6 C 0.12 3.99 5.43 22.72 0.12 4.11 16 7 C -0.20 -5.99 8.54 22.34 0.19 -5.80 16 8 C -0.05 -1.86 9.43 22.53 0.21 -1.65 16 9 C -0.17 -8.16 5.89 -19.98 -0.12 -8.28 16 10 C 0.36 21.35 6.90 25.61 0.18 21.53 16 11 O -0.60 -40.64 14.92 -4.72 -0.07 -40.71 16 12 C -0.54 -29.71 8.83 23.65 0.21 -29.50 16 13 H 0.10 4.73 6.06 -2.91 -0.02 4.71 16 14 C 0.02 1.13 5.49 85.40 0.47 1.60 16 15 N -0.79 -46.82 11.76 21.89 0.26 -46.57 16 16 Si 1.00 38.34 29.57 68.60 2.03 40.36 16 17 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 18 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 19 H -0.24 -8.44 7.11 99.48 0.71 -7.73 16 20 C -0.07 -2.89 9.59 22.53 0.22 -2.67 16 21 C -0.16 -5.67 9.97 22.34 0.22 -5.45 16 22 C 0.48 11.02 7.27 71.24 0.52 11.54 16 23 O -0.52 -16.01 16.25 28.42 0.46 -15.55 16 24 O -0.35 -5.90 10.55 -51.42 -0.54 -6.44 16 25 C 0.03 0.31 10.56 113.37 1.20 1.51 16 26 H 0.13 1.87 8.06 -2.91 -0.02 1.84 16 27 H 0.08 2.09 6.10 -2.91 -0.02 2.07 16 28 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 29 H 0.16 3.50 5.73 -2.91 -0.02 3.49 16 30 H 0.14 5.02 6.21 -2.91 -0.02 5.00 16 31 H 0.28 14.90 8.29 -92.71 -0.77 14.13 16 32 H 0.11 5.30 7.65 -2.91 -0.02 5.27 16 33 H 0.14 4.52 8.06 -2.91 -0.02 4.50 16 34 H 0.06 0.77 8.13 -2.39 -0.02 0.75 16 35 H 0.14 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.06 0.78 8.13 -2.39 -0.02 0.76 16 Total: -1.00 -79.72 320.47 7.31 -72.41 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 1.12 Total: 21.37 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: 4.65 Total: -15.52 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: 0.26 Total: -46.57 kcal Atomic # 8 Polarization: -71.33 SS G_CDS: -0.74 Total: -72.06 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.36 kcal Total: -79.72 7.31 -72.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233526458.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.822 kcal (2) G-P(sol) polarization free energy of solvation -79.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds