Wall clock time and date at job start Tue Mar 31 2020 08:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 111.00043 * 2 1 4 4 C 1.50702 * 109.47083 * 293.95407 * 3 2 1 5 5 H 1.07999 * 119.99727 * 359.97438 * 4 3 2 6 6 C 1.37868 * 120.00025 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00070 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99930 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47145 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47021 * 120.00101 * 8 6 4 11 11 H 1.48497 * 109.47362 * 239.99935 * 8 6 4 12 12 C 1.46899 * 111.00122 * 123.95328 * 2 1 3 13 13 C 1.50703 * 109.47090 * 66.04411 * 12 2 1 14 14 C 1.39341 * 119.57238 * 269.97554 * 13 12 2 15 15 C 1.36086 * 121.06120 * 180.32707 * 14 13 12 16 16 C 1.40574 * 119.74681 * 359.40385 * 15 14 13 17 17 N 1.33714 * 121.07854 * 180.31902 * 16 15 14 18 18 C 1.31116 * 121.35611 * 180.27926 * 17 16 15 19 19 C 1.39236 * 121.77411 * 359.97438 * 18 17 16 20 20 C 1.36749 * 119.91712 * 0.02562 * 19 18 17 21 21 Cl 1.73598 * 120.93644 * 179.97438 * 20 19 18 22 22 C 1.40908 * 118.12449 * 359.97438 * 20 19 18 23 23 C 1.36152 * 119.56892 * 90.00568 * 13 12 2 24 24 H 1.09005 * 109.47087 * 296.04808 * 1 2 3 25 25 H 1.09002 * 109.47223 * 56.04676 * 1 2 3 26 26 H 1.08997 * 109.47335 * 176.05012 * 1 2 3 27 27 H 1.08996 * 109.47305 * 53.95508 * 3 2 1 28 28 H 1.09002 * 109.46926 * 173.95508 * 3 2 1 29 29 H 0.97002 * 119.99723 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.46889 * 306.04617 * 12 2 1 31 31 H 1.09002 * 109.47160 * 186.04660 * 12 2 1 32 32 H 1.08003 * 119.46775 * 0.02562 * 14 13 12 33 33 H 1.08000 * 120.12527 * 179.73697 * 15 14 13 34 34 H 1.08007 * 119.11164 * 179.97438 * 18 17 16 35 35 H 1.07996 * 120.03934 * 179.97438 * 19 18 17 36 36 H 1.08000 * 120.19544 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0746 1.5112 -2.0488 6 6 2.0267 3.3494 -1.5285 7 7 2.7119 4.0018 -0.6150 8 14 1.5829 4.1867 -3.1383 9 1 0.8157 3.2441 -3.9914 10 1 0.7549 5.3876 -2.8598 11 1 2.8248 4.5943 -3.8431 12 6 1.9954 -0.7660 1.1376 13 6 1.6369 -2.2204 0.9729 14 6 0.4396 -2.6977 1.5022 15 6 0.0888 -4.0066 1.3769 16 6 0.9379 -4.8938 0.6928 17 7 0.6166 -6.1837 0.5485 18 6 1.4070 -7.0171 -0.0838 19 6 2.6167 -6.6044 -0.6361 20 6 3.0068 -5.2984 -0.5250 21 17 4.5098 -4.7552 -1.2029 22 6 2.1544 -4.4061 0.1553 23 6 2.4874 -3.0511 0.3093 24 1 -0.3633 0.4513 0.9233 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3634 -1.0252 -0.0708 27 1 1.5611 1.9274 0.8309 28 1 3.0797 1.3444 0.1082 29 1 2.9865 4.9180 -0.7770 30 1 1.5611 -0.3872 2.0628 31 1 3.0797 -0.6611 1.1756 32 1 -0.2184 -2.0190 2.0246 33 1 -0.8409 -4.3612 1.7968 34 1 1.1118 -8.0517 -0.1789 35 1 3.2464 -7.3148 -1.1508 36 1 3.4127 -2.6697 -0.0966 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237267332.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:42 Heat of formation + Delta-G solvation = 50.513434 kcal Electronic energy + Delta-G solvation = -19822.721840 eV Core-core repulsion = 16718.517944 eV Total energy + Delta-G solvation = -3104.203896 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.96497 -38.08333 -36.94215 -35.89319 -33.24871 -32.65033 -30.96458 -30.34756 -27.32911 -26.71165 -24.63482 -23.87135 -22.52522 -21.99824 -20.32758 -18.22318 -17.18689 -17.10912 -16.25818 -15.08289 -15.01002 -14.68787 -14.49003 -14.29171 -14.10777 -13.85386 -13.60765 -13.46947 -12.80414 -12.52599 -11.98098 -11.77833 -11.75267 -11.55419 -11.32844 -11.08899 -10.97930 -10.88108 -10.64873 -10.46941 -10.15489 -9.90367 -9.75320 -9.24652 -8.83585 -8.46738 -8.19421 -7.31272 -6.05543 -4.06791 0.19478 0.66049 1.75150 1.83613 2.80092 3.29607 3.37223 3.42339 3.95197 4.11682 4.40447 4.41517 4.54469 4.68998 4.93844 5.00296 5.15300 5.26575 5.31547 5.35795 5.36944 5.56893 5.77168 5.88544 6.01322 6.04384 6.16121 6.22707 6.27972 6.32926 6.66573 6.72675 6.77904 7.22487 7.28219 7.70023 7.76091 8.02440 8.13555 8.48944 9.01047 9.57671 11.05375 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.020667 B = 0.003812 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.493090 B = 7342.952295 C = 8059.754038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.534 5.534 3 C 0.192 3.808 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.085 3.915 13 C -0.051 4.051 14 C -0.080 4.080 15 C -0.100 4.100 16 C 0.132 3.868 17 N -0.469 5.469 18 C 0.132 3.868 19 C -0.173 4.173 20 C 0.024 3.976 21 Cl -0.043 7.043 22 C -0.093 4.093 23 C -0.080 4.080 24 H 0.012 0.988 25 H 0.075 0.925 26 H 0.047 0.953 27 H -0.007 1.007 28 H 0.031 0.969 29 H 0.261 0.739 30 H 0.037 0.963 31 H 0.080 0.920 32 H 0.131 0.869 33 H 0.137 0.863 34 H 0.165 0.835 35 H 0.145 0.855 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.865 -20.473 3.432 20.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.258 5.258 3 C 0.067 3.933 4 C -0.545 4.545 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.210 1.210 12 C -0.043 4.043 13 C -0.051 4.051 14 C -0.100 4.100 15 C -0.119 4.119 16 C 0.011 3.989 17 N -0.177 5.177 18 C -0.041 4.041 19 C -0.194 4.194 20 C -0.011 4.011 21 Cl -0.014 7.014 22 C -0.096 4.096 23 C -0.100 4.100 24 H 0.031 0.969 25 H 0.094 0.906 26 H 0.066 0.934 27 H 0.010 0.990 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.149 0.851 33 H 0.155 0.845 34 H 0.182 0.818 35 H 0.163 0.837 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.309 -20.634 3.372 20.949 hybrid contribution 0.541 1.281 -0.602 1.515 sum -0.769 -19.353 2.771 19.566 Atomic orbital electron populations 1.22300 0.88809 0.99718 1.00650 1.62183 1.07154 1.17800 1.38657 1.19776 0.95461 0.81209 0.96835 1.21183 1.34813 0.96864 1.01642 0.91770 1.24981 0.95276 0.97334 0.96998 1.69966 1.38410 1.11430 1.34037 0.86449 0.78184 0.79313 0.83538 1.19641 1.21100 1.20982 1.21134 1.00867 0.88631 0.93664 1.19821 0.93476 0.96470 0.95351 1.20999 0.95995 0.95133 0.97854 1.20692 0.99517 0.92291 0.99396 1.18784 0.92110 0.90602 0.97393 1.67997 1.32283 1.02653 1.14773 1.22854 0.89379 0.99608 0.92222 1.21796 0.99351 0.94942 1.03333 1.21156 0.88953 0.94110 0.96835 1.98407 1.29912 1.90216 1.82883 1.18645 0.95281 0.95102 1.00539 1.20917 1.00773 0.90670 0.97623 0.96946 0.90611 0.93428 0.98953 0.95102 0.92956 0.94497 0.90114 0.85093 0.84486 0.81779 0.83733 0.84444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 8.93 60.06 0.54 1.18 16 2 N -0.53 -11.25 4.74 -245.82 -1.17 -12.42 16 3 C 0.19 4.90 4.72 -4.97 -0.02 4.88 16 4 C -0.51 -14.09 8.46 -34.44 -0.29 -14.38 16 5 H 0.06 1.78 7.12 -52.49 -0.37 1.41 16 6 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 8 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.09 1.47 5.09 -4.98 -0.03 1.44 16 13 C -0.05 -0.76 4.85 -104.96 -0.51 -1.27 16 14 C -0.08 -1.05 7.84 -39.94 -0.31 -1.37 16 15 C -0.10 -1.28 9.98 -39.47 -0.39 -1.68 16 16 C 0.13 1.84 6.60 -84.86 -0.56 1.28 16 17 N -0.47 -6.01 10.34 -11.00 -0.11 -6.12 16 18 C 0.13 1.31 11.14 -17.49 -0.19 1.11 16 19 C -0.17 -1.70 9.84 -39.75 -0.39 -2.09 16 20 C 0.02 0.30 6.37 -39.11 -0.25 0.05 16 21 Cl -0.04 -0.51 27.66 -51.86 -1.43 -1.94 16 22 C -0.09 -1.31 5.74 -106.78 -0.61 -1.92 16 23 C -0.08 -1.20 9.07 -39.52 -0.36 -1.56 16 24 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.08 1.57 6.76 -51.93 -0.35 1.22 16 26 H 0.05 0.80 6.15 -51.93 -0.32 0.48 16 27 H -0.01 -0.20 8.12 -51.93 -0.42 -0.62 16 28 H 0.03 0.84 7.93 -51.93 -0.41 0.42 16 29 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.04 0.61 8.06 -51.93 -0.42 0.19 16 31 H 0.08 1.38 7.86 -51.93 -0.41 0.98 16 32 H 0.13 1.52 8.01 -52.48 -0.42 1.10 16 33 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.17 1.00 8.06 -52.48 -0.42 0.57 16 35 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.14 2.06 7.07 -52.49 -0.37 1.69 16 LS Contribution 318.70 15.07 4.80 4.80 Total: -1.00 -30.72 318.70 -10.00 -40.72 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -4.32 Total: -2.98 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -3.48 Total: -12.87 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: -0.54 Total: -44.26 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.43 Total: -1.94 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.72 -10.00 -40.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237267332.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.233 kcal (2) G-P(sol) polarization free energy of solvation -30.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds