Wall clock time and date at job start Tue Mar 31 2020 08:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 111.00043 * 2 1 4 4 C 1.50702 * 109.47083 * 293.95407 * 3 2 1 5 5 H 1.07999 * 119.99727 * 359.97438 * 4 3 2 6 6 C 1.37868 * 120.00025 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00070 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99930 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47145 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47021 * 120.00101 * 8 6 4 11 11 H 1.48497 * 109.47362 * 239.99935 * 8 6 4 12 12 C 1.46899 * 111.00122 * 123.95328 * 2 1 3 13 13 C 1.50703 * 109.47090 * 66.04411 * 12 2 1 14 14 C 1.39341 * 119.57238 * 269.97554 * 13 12 2 15 15 C 1.36086 * 121.06120 * 180.32707 * 14 13 12 16 16 C 1.40574 * 119.74681 * 359.40385 * 15 14 13 17 17 N 1.33714 * 121.07854 * 180.31902 * 16 15 14 18 18 C 1.31116 * 121.35611 * 180.27926 * 17 16 15 19 19 C 1.39236 * 121.77411 * 359.97438 * 18 17 16 20 20 C 1.36749 * 119.91712 * 0.02562 * 19 18 17 21 21 Cl 1.73598 * 120.93644 * 179.97438 * 20 19 18 22 22 C 1.40908 * 118.12449 * 359.97438 * 20 19 18 23 23 C 1.36152 * 119.56892 * 90.00568 * 13 12 2 24 24 H 1.09005 * 109.47087 * 296.04808 * 1 2 3 25 25 H 1.09002 * 109.47223 * 56.04676 * 1 2 3 26 26 H 1.08997 * 109.47335 * 176.05012 * 1 2 3 27 27 H 1.08996 * 109.47305 * 53.95508 * 3 2 1 28 28 H 1.09002 * 109.46926 * 173.95508 * 3 2 1 29 29 H 0.97002 * 119.99723 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.46889 * 306.04617 * 12 2 1 31 31 H 1.09002 * 109.47160 * 186.04660 * 12 2 1 32 32 H 1.08003 * 119.46775 * 0.02562 * 14 13 12 33 33 H 1.08000 * 120.12527 * 179.73697 * 15 14 13 34 34 H 1.08007 * 119.11164 * 179.97438 * 18 17 16 35 35 H 1.07996 * 120.03934 * 179.97438 * 19 18 17 36 36 H 1.08000 * 120.19544 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0746 1.5112 -2.0488 6 6 2.0267 3.3494 -1.5285 7 7 2.7119 4.0018 -0.6150 8 14 1.5829 4.1867 -3.1383 9 1 0.8157 3.2441 -3.9914 10 1 0.7549 5.3876 -2.8598 11 1 2.8248 4.5943 -3.8431 12 6 1.9954 -0.7660 1.1376 13 6 1.6369 -2.2204 0.9729 14 6 0.4396 -2.6977 1.5022 15 6 0.0888 -4.0066 1.3769 16 6 0.9379 -4.8938 0.6928 17 7 0.6166 -6.1837 0.5485 18 6 1.4070 -7.0171 -0.0838 19 6 2.6167 -6.6044 -0.6361 20 6 3.0068 -5.2984 -0.5250 21 17 4.5098 -4.7552 -1.2029 22 6 2.1544 -4.4061 0.1553 23 6 2.4874 -3.0511 0.3093 24 1 -0.3633 0.4513 0.9233 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3634 -1.0252 -0.0708 27 1 1.5611 1.9274 0.8309 28 1 3.0797 1.3444 0.1082 29 1 2.9865 4.9180 -0.7770 30 1 1.5611 -0.3872 2.0628 31 1 3.0797 -0.6611 1.1756 32 1 -0.2184 -2.0190 2.0246 33 1 -0.8409 -4.3612 1.7968 34 1 1.1118 -8.0517 -0.1789 35 1 3.2464 -7.3148 -1.1508 36 1 3.4127 -2.6697 -0.0966 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237267332.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:41 Heat of formation + Delta-G solvation = 32.089821 kcal Electronic energy + Delta-G solvation = -19823.520748 eV Core-core repulsion = 16718.517944 eV Total energy + Delta-G solvation = -3105.002804 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.92233 -39.30703 -37.86352 -37.32581 -34.70834 -34.16849 -32.18232 -31.33537 -29.22091 -28.10783 -26.09998 -24.98242 -23.80244 -23.12981 -21.97304 -19.20208 -18.59761 -18.09833 -17.88671 -16.83994 -16.25794 -15.98776 -15.62719 -15.53869 -15.48841 -15.03639 -14.79493 -14.56433 -14.13366 -13.80403 -13.46432 -13.36439 -13.03035 -12.87834 -12.75048 -12.66218 -12.41758 -12.31757 -12.24471 -11.99514 -11.81301 -11.28808 -11.09162 -10.66635 -10.63005 -9.81085 -9.24113 -9.01861 -8.21166 -6.30881 -0.74885 -0.29014 0.83431 0.85696 1.40237 1.41194 1.54524 1.83363 2.40173 2.95434 3.11711 3.26607 3.45974 3.52725 3.57389 3.71978 4.02554 4.05591 4.25719 4.32848 4.44511 4.48954 4.55908 4.67699 4.74430 4.80474 4.97127 4.98432 5.06781 5.16370 5.20976 5.30009 5.40000 5.56257 5.64112 5.77050 6.03476 6.29891 6.58694 6.80926 6.85091 7.38793 8.89941 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.020667 B = 0.003812 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.493090 B = 7342.952295 C = 8059.754038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.544 5.544 3 C 0.207 3.793 4 C -0.522 4.522 5 H 0.061 0.939 6 C 0.003 3.997 7 N -0.934 5.934 8 Si 0.967 3.033 9 H -0.265 1.265 10 H -0.277 1.277 11 H -0.279 1.279 12 C 0.089 3.911 13 C -0.063 4.063 14 C -0.085 4.085 15 C -0.095 4.095 16 C 0.118 3.882 17 N -0.488 5.488 18 C 0.143 3.857 19 C -0.157 4.157 20 C 0.006 3.994 21 Cl -0.046 7.046 22 C -0.110 4.110 23 C -0.089 4.089 24 H 0.019 0.981 25 H 0.055 0.945 26 H 0.074 0.926 27 H -0.032 1.032 28 H 0.006 0.994 29 H 0.265 0.735 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.146 0.854 33 H 0.158 0.842 34 H 0.209 0.791 35 H 0.179 0.821 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.887 -22.868 2.621 23.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.268 5.268 3 C 0.081 3.919 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.195 4.195 7 N -0.574 5.574 8 Si 0.792 3.208 9 H -0.189 1.189 10 H -0.203 1.203 11 H -0.204 1.204 12 C -0.038 4.038 13 C -0.064 4.064 14 C -0.105 4.105 15 C -0.114 4.114 16 C -0.003 4.003 17 N -0.197 5.197 18 C -0.030 4.030 19 C -0.177 4.177 20 C -0.029 4.029 21 Cl -0.017 7.017 22 C -0.113 4.113 23 C -0.109 4.109 24 H 0.037 0.963 25 H 0.074 0.926 26 H 0.092 0.908 27 H -0.014 1.014 28 H 0.024 0.976 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.164 0.836 33 H 0.176 0.824 34 H 0.225 0.775 35 H 0.197 0.803 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.339 -23.047 2.570 23.307 hybrid contribution 0.901 1.810 -0.342 2.051 sum -1.438 -21.237 2.227 21.402 Atomic orbital electron populations 1.22255 0.87470 1.01072 1.00054 1.62057 1.08437 1.15254 1.41042 1.19416 0.93815 0.83480 0.95201 1.21476 1.34801 0.97432 1.02342 0.92081 1.25870 0.95018 0.98023 1.00572 1.70084 1.39364 1.11898 1.36079 0.85363 0.78076 0.78239 0.79123 1.18904 1.20286 1.20435 1.21087 1.00295 0.89847 0.92604 1.19607 0.94860 0.94832 0.97094 1.21061 0.95453 0.95819 0.98129 1.20932 0.99979 0.91843 0.98598 1.19027 0.92137 0.91490 0.97639 1.68078 1.33238 1.02329 1.16011 1.23654 0.88531 1.00988 0.89863 1.22245 0.99403 0.94322 1.01766 1.21344 0.89015 0.95008 0.97536 1.98404 1.29999 1.90430 1.82896 1.18753 0.96172 0.94864 1.01506 1.20894 1.00509 0.91561 0.97912 0.96261 0.92628 0.90759 1.01449 0.97630 0.92666 0.93697 0.90982 0.83601 0.82419 0.77467 0.80342 0.85517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.52 8.93 127.69 1.14 2.66 16 2 N -0.54 -23.54 4.74 -931.64 -4.42 -27.96 16 3 C 0.21 11.02 4.72 85.56 0.40 11.42 16 4 C -0.52 -29.74 8.46 25.60 0.22 -29.53 16 5 H 0.06 3.45 7.12 -2.91 -0.02 3.43 16 6 C 0.00 0.18 5.46 84.65 0.46 0.64 16 7 N -0.93 -56.13 13.29 21.44 0.28 -55.85 16 8 Si 0.97 44.49 29.54 68.60 2.03 46.51 16 9 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 12 C 0.09 3.17 5.09 85.56 0.44 3.61 16 13 C -0.06 -1.93 4.85 -20.08 -0.10 -2.02 16 14 C -0.08 -2.15 7.84 22.03 0.17 -1.98 16 15 C -0.10 -2.27 9.98 22.34 0.22 -2.05 16 16 C 0.12 3.07 6.60 40.27 0.27 3.34 16 17 N -0.49 -11.15 10.34 -188.71 -1.95 -13.10 16 18 C 0.14 2.27 11.14 85.04 0.95 3.21 16 19 C -0.16 -2.55 9.84 22.16 0.22 -2.34 16 20 C 0.01 0.13 6.37 22.57 0.14 0.28 16 21 Cl -0.05 -1.06 27.66 -2.72 -0.08 -1.14 16 22 C -0.11 -3.02 5.74 -21.26 -0.12 -3.14 16 23 C -0.09 -2.71 9.07 22.31 0.20 -2.50 16 24 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 25 H 0.05 2.33 6.76 -2.39 -0.02 2.31 16 26 H 0.07 2.43 6.15 -2.39 -0.01 2.42 16 27 H -0.03 -1.84 8.12 -2.39 -0.02 -1.85 16 28 H 0.01 0.32 7.93 -2.39 -0.02 0.30 16 29 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 30 H 0.04 1.51 8.06 -2.39 -0.02 1.49 16 31 H 0.07 2.62 7.86 -2.39 -0.02 2.60 16 32 H 0.15 3.17 8.01 -2.91 -0.02 3.15 16 33 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 34 H 0.21 1.39 8.06 -2.91 -0.02 1.37 16 35 H 0.18 1.65 8.06 -2.91 -0.02 1.62 16 36 H 0.13 3.99 7.07 -2.91 -0.02 3.97 16 Total: -1.00 -67.43 318.70 1.57 -65.86 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: 1.09 Total: 4.07 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 4.61 Total: -18.40 kcal Atomic # 7 Polarization: -90.82 SS G_CDS: -6.09 Total: -96.91 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.08 Total: -1.14 kcal Total: -67.43 1.57 -65.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237267332.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.954 kcal (2) G-P(sol) polarization free energy of solvation -67.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds