Wall clock time and date at job start Tue Mar 31 2020 05:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35878 * 117.00476 * 2 1 4 4 C 1.38503 * 120.51763 * 0.02562 * 3 2 1 5 5 N 1.31909 * 120.83193 * 179.74182 * 4 3 2 6 6 C 1.32078 * 122.04474 * 0.25945 * 5 4 3 7 7 F 1.35097 * 119.52480 * 179.97438 * 6 5 4 8 8 C 1.38261 * 120.95380 * 0.02562 * 6 5 4 9 9 C 1.39713 * 119.04988 * 359.97438 * 8 6 5 10 10 C 1.48229 * 120.91563 * 180.02562 * 9 8 6 11 11 C 1.39447 * 119.65411 * 359.97438 * 10 9 8 12 12 C 1.38216 * 119.14559 * 179.97438 * 11 10 9 13 13 C 1.39432 * 118.45314 * 0.02562 * 12 11 10 14 14 O 1.35707 * 120.38279 * 180.02562 * 13 12 11 15 15 C 1.34803 * 117.00357 * 354.52278 * 14 13 12 16 16 H 1.08008 * 119.99762 * 5.05289 * 15 14 13 17 17 C 1.38665 * 120.00491 * 185.05644 * 15 14 13 18 18 N 1.31547 * 119.99489 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00214 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47108 * 59.99805 * 19 17 15 21 21 H 1.48499 * 109.47174 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47151 * 300.00013 * 19 17 15 23 23 C 1.38979 * 119.22989 * 359.97438 * 13 12 11 24 24 N 1.31643 * 120.79242 * 359.72502 * 23 13 12 25 25 H 1.09003 * 109.46964 * 60.00071 * 1 2 3 26 26 H 1.08996 * 109.47382 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.46855 * 299.99866 * 1 2 3 28 28 H 1.08000 * 119.58645 * 0.02562 * 4 3 2 29 29 H 1.07997 * 120.47736 * 180.02562 * 8 6 5 30 30 H 1.08005 * 120.42807 * 0.03043 * 11 10 9 31 31 H 1.07994 * 120.77245 * 180.02562 * 12 11 10 32 32 H 0.96995 * 120.00219 * 179.97438 * 18 17 15 33 33 H 1.07998 * 119.60438 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2106 0.0000 4 6 1.3023 2.3790 0.0005 5 7 1.8948 3.5576 0.0056 6 6 3.2098 3.6808 0.0054 7 9 3.7629 4.9134 0.0102 8 6 4.0285 2.5667 -0.0009 9 6 3.4459 1.2968 -0.0064 10 6 4.2843 0.0744 -0.0126 11 6 5.6739 0.1908 -0.0135 12 6 6.4455 -0.9559 -0.0188 13 6 5.7992 -2.1914 -0.0236 14 8 6.5185 -3.3422 -0.0283 15 6 7.8567 -3.2272 -0.1428 16 1 8.3166 -2.2499 -0.1433 17 6 8.6429 -4.3634 -0.2600 18 7 8.0827 -5.5536 -0.2589 19 14 10.4971 -4.2038 -0.4193 20 1 11.0394 -3.5143 0.7790 21 1 11.1027 -5.5553 -0.5286 22 1 10.8235 -3.4149 -1.6343 23 6 4.4100 -2.2307 -0.0224 24 7 3.7044 -1.1193 -0.0114 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.2237 2.3246 0.0014 29 1 5.1029 2.6764 -0.0006 30 1 6.1413 1.1645 -0.0092 31 1 7.5238 -0.8964 -0.0192 32 1 8.6325 -6.3485 -0.3413 33 1 3.9032 -3.1843 -0.0265 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239027643.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:14 Heat of formation + Delta-G solvation = -24.402304 kcal Electronic energy + Delta-G solvation = -21711.119779 eV Core-core repulsion = 18039.497823 eV Total energy + Delta-G solvation = -3671.621956 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.085 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.87597 -40.66841 -39.51012 -37.85691 -37.33907 -33.35648 -32.54182 -31.46717 -30.05364 -28.88872 -27.46438 -25.88720 -24.02593 -23.45035 -22.24200 -21.41832 -18.50446 -18.18223 -17.72090 -17.62828 -16.85087 -16.15250 -15.65373 -15.48218 -15.14667 -14.88009 -14.61246 -14.26640 -14.19831 -13.77575 -13.37301 -13.15197 -12.97755 -12.85752 -12.46695 -12.41277 -11.93313 -11.88033 -11.48705 -11.34398 -11.19141 -10.69481 -9.97204 -9.92831 -9.69757 -9.19835 -8.98143 -8.80877 -8.37864 -7.36431 -6.75399 -4.30279 0.71203 1.01557 1.95555 2.23374 2.97986 2.99768 3.02564 3.23784 3.59997 3.65110 3.73437 4.32975 4.43023 4.51091 4.73212 4.84192 4.95427 5.05897 5.11181 5.21133 5.35368 5.41342 5.48150 5.52896 5.58223 5.74818 6.01505 6.08623 6.42605 6.48360 6.69747 6.85299 7.05221 7.26327 7.35580 7.61836 7.66936 8.64008 8.69459 9.31186 10.40098 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.024587 B = 0.003688 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.537918 B = 7589.899157 C = 8708.138299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.261 6.261 3 C 0.084 3.916 4 C 0.044 3.956 5 N -0.493 5.493 6 C 0.268 3.732 7 F -0.118 7.118 8 C -0.163 4.163 9 C 0.039 3.961 10 C 0.023 3.977 11 C -0.089 4.089 12 C -0.207 4.207 13 C 0.112 3.888 14 O -0.152 6.152 15 C -0.394 4.394 16 H 0.097 0.903 17 C 0.044 3.956 18 N -0.846 5.846 19 Si 0.946 3.054 20 H -0.267 1.267 21 H -0.275 1.275 22 H -0.267 1.267 23 C 0.034 3.966 24 N -0.399 5.399 25 H 0.053 0.947 26 H 0.103 0.897 27 H 0.053 0.947 28 H 0.166 0.834 29 H 0.153 0.847 30 H 0.122 0.878 31 H 0.140 0.860 32 H 0.277 0.723 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.526 10.682 0.242 13.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.170 6.170 3 C 0.034 3.966 4 C -0.113 4.113 5 N -0.209 5.209 6 C 0.114 3.886 7 F -0.097 7.097 8 C -0.185 4.185 9 C 0.030 3.970 10 C -0.110 4.110 11 C -0.109 4.109 12 C -0.233 4.233 13 C 0.053 3.947 14 O -0.051 6.051 15 C -0.470 4.470 16 H 0.114 0.886 17 C -0.163 4.163 18 N -0.478 5.478 19 Si 0.770 3.230 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.191 1.191 23 C -0.132 4.132 24 N -0.108 5.108 25 H 0.071 0.929 26 H 0.121 0.879 27 H 0.071 0.929 28 H 0.183 0.817 29 H 0.171 0.829 30 H 0.140 0.860 31 H 0.157 0.843 32 H 0.087 0.913 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -9.787 10.689 0.257 14.495 hybrid contribution 2.262 -0.137 -0.070 2.267 sum -7.525 10.552 0.187 12.962 Atomic orbital electron populations 1.23164 0.79512 1.04389 1.00802 1.86538 1.19782 1.23733 1.86997 1.20057 0.92224 0.86356 0.97978 1.22461 1.00115 0.85412 1.03295 1.66696 1.10668 1.28700 1.14834 1.17683 0.87841 0.80183 1.02850 1.91587 1.83871 1.40377 1.93913 1.21628 1.01818 0.89939 1.05163 1.18122 0.89517 0.91976 0.97408 1.18589 0.89621 0.90004 1.12747 1.21674 0.93313 0.98537 0.97377 1.21424 1.01088 0.91609 1.09146 1.20635 0.92990 0.87219 0.93840 1.83947 1.20477 1.25610 1.75042 1.21435 0.78137 0.95178 1.52207 0.88609 1.25415 1.01112 0.94057 0.95753 1.70013 1.37100 0.97862 1.42794 0.85690 0.79477 0.78348 0.79519 1.19159 1.19943 1.19149 1.21822 0.88086 0.96549 1.06696 1.67452 1.38918 0.97040 1.07390 0.92867 0.87872 0.92871 0.81692 0.82906 0.85993 0.84270 0.91312 0.82828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.82 101.05 0.99 1.15 16 2 O -0.26 -3.81 8.49 -19.36 -0.16 -3.97 16 3 C 0.08 1.24 6.71 -38.72 -0.26 0.98 16 4 C 0.04 0.57 10.22 -17.42 -0.18 0.39 16 5 N -0.49 -7.25 10.35 -13.57 -0.14 -7.39 16 6 C 0.27 3.90 8.40 -17.44 -0.15 3.75 16 7 F -0.12 -1.67 17.28 2.25 0.04 -1.63 16 8 C -0.16 -2.29 9.46 -39.02 -0.37 -2.66 16 9 C 0.04 0.62 5.92 -104.48 -0.62 0.00 16 10 C 0.02 0.43 6.74 -82.93 -0.56 -0.13 16 11 C -0.09 -1.55 9.47 -39.14 -0.37 -1.92 16 12 C -0.21 -4.14 9.25 -39.15 -0.36 -4.50 16 13 C 0.11 2.52 6.67 -38.86 -0.26 2.26 16 14 O -0.15 -3.98 9.76 0.26 0.00 -3.97 16 15 C -0.39 -10.07 9.50 30.89 0.29 -9.78 16 16 H 0.10 2.23 5.25 -52.48 -0.28 1.95 16 17 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 18 N -0.85 -22.92 13.67 55.48 0.76 -22.16 16 19 Si 0.95 18.81 29.55 -169.99 -5.02 13.79 16 20 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 21 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 22 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 23 C 0.03 0.71 11.14 -17.36 -0.19 0.52 16 24 N -0.40 -7.89 8.27 -9.62 -0.08 -7.97 16 25 H 0.05 0.40 7.68 -51.93 -0.40 0.01 16 26 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.40 7.68 -51.93 -0.40 0.00 16 28 H 0.17 1.58 6.31 -52.49 -0.33 1.25 16 29 H 0.15 1.80 6.31 -52.49 -0.33 1.47 16 30 H 0.12 1.70 6.27 -52.48 -0.33 1.37 16 31 H 0.14 2.67 5.75 -52.49 -0.30 2.36 16 32 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 33 H 0.15 2.96 8.06 -52.49 -0.42 2.54 16 LS Contribution 297.25 15.07 4.48 4.48 Total: -1.00 -29.73 297.25 -4.60 -34.33 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -2.35 Total: 3.43 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -2.13 Total: -8.92 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.54 Total: -37.52 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -0.16 Total: -7.95 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.02 Total: 13.79 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.73 -4.60 -34.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239027643.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.929 kcal (2) G-P(sol) polarization free energy of solvation -29.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds