Wall clock time and date at job start Tue Mar 31 2020 05:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35878 * 117.00476 * 2 1 4 4 C 1.38503 * 120.51763 * 0.02562 * 3 2 1 5 5 N 1.31909 * 120.83193 * 179.74182 * 4 3 2 6 6 C 1.32078 * 122.04474 * 0.25945 * 5 4 3 7 7 F 1.35097 * 119.52480 * 179.97438 * 6 5 4 8 8 C 1.38261 * 120.95380 * 0.02562 * 6 5 4 9 9 C 1.39713 * 119.04988 * 359.97438 * 8 6 5 10 10 C 1.48229 * 120.91563 * 180.02562 * 9 8 6 11 11 C 1.39447 * 119.65411 * 359.97438 * 10 9 8 12 12 C 1.38216 * 119.14559 * 179.97438 * 11 10 9 13 13 C 1.39432 * 118.45314 * 0.02562 * 12 11 10 14 14 O 1.35707 * 120.38279 * 180.02562 * 13 12 11 15 15 C 1.34803 * 117.00357 * 354.52278 * 14 13 12 16 16 H 1.08008 * 119.99762 * 5.05289 * 15 14 13 17 17 C 1.38665 * 120.00491 * 185.05644 * 15 14 13 18 18 N 1.31547 * 119.99489 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00214 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47108 * 59.99805 * 19 17 15 21 21 H 1.48499 * 109.47174 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47151 * 300.00013 * 19 17 15 23 23 C 1.38979 * 119.22989 * 359.97438 * 13 12 11 24 24 N 1.31643 * 120.79242 * 359.72502 * 23 13 12 25 25 H 1.09003 * 109.46964 * 60.00071 * 1 2 3 26 26 H 1.08996 * 109.47382 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.46855 * 299.99866 * 1 2 3 28 28 H 1.08000 * 119.58645 * 0.02562 * 4 3 2 29 29 H 1.07997 * 120.47736 * 180.02562 * 8 6 5 30 30 H 1.08005 * 120.42807 * 0.03043 * 11 10 9 31 31 H 1.07994 * 120.77245 * 180.02562 * 12 11 10 32 32 H 0.96995 * 120.00219 * 179.97438 * 18 17 15 33 33 H 1.07998 * 119.60438 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2106 0.0000 4 6 1.3023 2.3790 0.0005 5 7 1.8948 3.5576 0.0056 6 6 3.2098 3.6808 0.0054 7 9 3.7629 4.9134 0.0102 8 6 4.0285 2.5667 -0.0009 9 6 3.4459 1.2968 -0.0064 10 6 4.2843 0.0744 -0.0126 11 6 5.6739 0.1908 -0.0135 12 6 6.4455 -0.9559 -0.0188 13 6 5.7992 -2.1914 -0.0236 14 8 6.5185 -3.3422 -0.0283 15 6 7.8567 -3.2272 -0.1428 16 1 8.3166 -2.2499 -0.1433 17 6 8.6429 -4.3634 -0.2600 18 7 8.0827 -5.5536 -0.2589 19 14 10.4971 -4.2038 -0.4193 20 1 11.0394 -3.5143 0.7790 21 1 11.1027 -5.5553 -0.5286 22 1 10.8235 -3.4149 -1.6343 23 6 4.4100 -2.2307 -0.0224 24 7 3.7044 -1.1193 -0.0114 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.2237 2.3246 0.0014 29 1 5.1029 2.6764 -0.0006 30 1 6.1413 1.1645 -0.0092 31 1 7.5238 -0.8964 -0.0192 32 1 8.6325 -6.3485 -0.3413 33 1 3.9032 -3.1843 -0.0265 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239027643.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:13 Heat of formation + Delta-G solvation = -43.872399 kcal Electronic energy + Delta-G solvation = -21711.964066 eV Core-core repulsion = 18039.497823 eV Total energy + Delta-G solvation = -3672.466243 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.085 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.97270 -41.88804 -41.03640 -39.04530 -38.85963 -34.75967 -34.20306 -33.01671 -31.17881 -30.36490 -28.31907 -27.62228 -25.34868 -24.85271 -23.54022 -22.86327 -20.13614 -19.49538 -18.94832 -18.81518 -18.32151 -17.23531 -17.13746 -16.60007 -16.46409 -16.35633 -15.88877 -15.81770 -15.44004 -15.09570 -14.74106 -14.40130 -14.24345 -14.20850 -13.87069 -13.80428 -13.60822 -13.06563 -12.73408 -12.65271 -12.24322 -12.19320 -11.70865 -11.23971 -10.86295 -10.84420 -10.54516 -10.33659 -9.56303 -8.89336 -8.55010 -6.21865 -0.53573 -0.09277 0.37636 0.75584 1.37319 1.47679 1.53197 2.13055 2.26855 2.41997 2.55604 2.86157 3.00585 3.16037 3.33262 3.37850 3.65197 3.84897 4.02117 4.12833 4.17598 4.24698 4.41145 4.47223 4.47689 4.53541 4.79299 4.84314 4.90415 5.02802 5.24620 5.37893 5.43399 5.71624 5.89332 6.32220 6.52138 6.87461 7.06927 7.59283 8.65727 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.024587 B = 0.003688 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.537918 B = 7589.899157 C = 8708.138299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.289 6.289 3 C 0.087 3.913 4 C 0.056 3.944 5 N -0.499 5.499 6 C 0.256 3.744 7 F -0.117 7.117 8 C -0.142 4.142 9 C 0.002 3.998 10 C 0.045 3.955 11 C -0.087 4.087 12 C -0.202 4.202 13 C 0.086 3.914 14 O -0.205 6.205 15 C -0.420 4.420 16 H 0.110 0.890 17 C -0.014 4.014 18 N -0.909 5.909 19 Si 1.019 2.981 20 H -0.255 1.255 21 H -0.273 1.273 22 H -0.256 1.256 23 C 0.025 3.975 24 N -0.408 5.408 25 H 0.073 0.927 26 H 0.112 0.888 27 H 0.073 0.927 28 H 0.202 0.798 29 H 0.177 0.823 30 H 0.167 0.833 31 H 0.147 0.853 32 H 0.277 0.723 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.337 14.048 0.216 16.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.199 6.199 3 C 0.036 3.964 4 C -0.101 4.101 5 N -0.215 5.215 6 C 0.103 3.897 7 F -0.096 7.096 8 C -0.163 4.163 9 C -0.007 4.007 10 C -0.091 4.091 11 C -0.107 4.107 12 C -0.228 4.228 13 C 0.030 3.970 14 O -0.108 6.108 15 C -0.495 4.495 16 H 0.127 0.873 17 C -0.214 4.214 18 N -0.544 5.544 19 Si 0.838 3.162 20 H -0.179 1.179 21 H -0.198 1.198 22 H -0.180 1.180 23 C -0.138 4.138 24 N -0.117 5.117 25 H 0.092 0.908 26 H 0.131 0.869 27 H 0.092 0.908 28 H 0.218 0.782 29 H 0.195 0.805 30 H 0.184 0.816 31 H 0.164 0.836 32 H 0.086 0.914 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -10.640 14.092 0.234 17.659 hybrid contribution 2.020 -0.735 -0.047 2.150 sum -8.620 13.357 0.188 15.898 Atomic orbital electron populations 1.23507 0.76766 1.05837 1.02739 1.86501 1.22763 1.23997 1.86678 1.20236 0.92087 0.87171 0.96875 1.22953 1.01550 0.84098 1.01539 1.66766 1.10997 1.29477 1.14253 1.17765 0.87958 0.80399 1.03618 1.91595 1.83850 1.40214 1.93950 1.21777 1.02996 0.88847 1.02725 1.18161 0.90219 0.91553 1.00781 1.19205 0.90643 0.90442 1.08790 1.22070 0.92877 0.99623 0.96106 1.21667 1.01795 0.91499 1.07796 1.21037 0.93634 0.87706 0.94581 1.83944 1.20941 1.27193 1.78699 1.21910 0.78482 0.96074 1.53049 0.87262 1.26626 1.06120 0.93459 0.95175 1.70152 1.38944 0.98782 1.46557 0.84634 0.73065 0.78449 0.80077 1.17922 1.19775 1.17975 1.21938 0.87824 0.97282 1.06753 1.67556 1.38851 0.97301 1.07989 0.90849 0.86943 0.90828 0.78160 0.80543 0.81595 0.83571 0.91393 0.82689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.82 113.37 1.11 1.20 16 2 O -0.29 -7.75 8.49 -92.17 -0.78 -8.53 16 3 C 0.09 2.30 6.71 22.83 0.15 2.45 16 4 C 0.06 1.24 10.22 84.74 0.87 2.10 16 5 N -0.50 -12.83 10.35 -196.83 -2.04 -14.86 16 6 C 0.26 6.52 8.40 84.66 0.71 7.23 16 7 F -0.12 -2.92 17.28 44.97 0.78 -2.14 16 8 C -0.14 -3.44 9.46 22.63 0.21 -3.22 16 9 C 0.00 0.05 5.92 -19.77 -0.12 -0.07 16 10 C 0.04 1.54 6.74 41.96 0.28 1.83 16 11 C -0.09 -2.83 9.47 22.56 0.21 -2.61 16 12 C -0.20 -7.93 9.25 22.55 0.21 -7.73 16 13 C 0.09 3.97 6.67 22.74 0.15 4.13 16 14 O -0.20 -11.37 9.76 -21.99 -0.21 -11.58 16 15 C -0.42 -22.40 9.50 67.92 0.64 -21.75 16 16 H 0.11 5.20 5.25 -2.91 -0.02 5.18 16 17 C -0.01 -0.73 5.49 84.84 0.47 -0.27 16 18 N -0.91 -52.26 13.67 21.62 0.30 -51.97 16 19 Si 1.02 39.41 29.55 68.60 2.03 41.44 16 20 H -0.26 -9.22 7.11 99.48 0.71 -8.52 16 21 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 22 H -0.26 -9.26 7.11 99.48 0.71 -8.56 16 23 C 0.02 1.06 11.14 84.90 0.95 2.00 16 24 N -0.41 -15.90 8.27 -184.35 -1.53 -17.42 16 25 H 0.07 0.83 7.68 -2.39 -0.02 0.81 16 26 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.07 0.83 7.68 -2.39 -0.02 0.81 16 28 H 0.20 2.83 6.31 -2.91 -0.02 2.82 16 29 H 0.18 3.30 6.31 -2.91 -0.02 3.29 16 30 H 0.17 3.86 6.27 -2.91 -0.02 3.84 16 31 H 0.15 5.49 5.75 -2.91 -0.02 5.48 16 32 H 0.28 14.61 8.31 -92.71 -0.77 13.84 16 33 H 0.16 6.34 8.06 -2.91 -0.02 6.32 16 Total: -1.00 -68.14 297.25 5.58 -62.56 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 1.18 Total: 17.21 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: 5.85 Total: -14.70 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -3.27 Total: -84.25 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -1.00 Total: -20.11 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.78 Total: -2.14 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.44 kcal Total: -68.14 5.58 -62.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239027643.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.692 kcal (2) G-P(sol) polarization free energy of solvation -68.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds