Wall clock time and date at job start Tue Mar 31 2020 08:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.38718 * 120.00063 * 2 1 4 4 C 1.39345 * 119.52606 * 0.02562 * 3 2 1 5 5 C 1.37955 * 119.31903 * 179.74591 * 4 3 2 6 6 C 1.40218 * 118.40572 * 0.47271 * 5 4 3 7 7 C 1.47775 * 120.49050 * 179.79831 * 6 5 4 8 8 C 1.40038 * 119.89959 * 64.72805 * 7 6 5 9 9 C 1.36180 * 120.12895 * 179.72244 * 8 7 6 10 10 C 1.40999 * 119.93607 * 0.26967 * 9 8 7 11 11 C 1.40973 * 120.09596 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99557 * 204.74031 * 11 10 9 13 13 C 1.39933 * 120.00380 * 24.73932 * 11 10 9 14 14 N 1.30844 * 119.99692 * 17.99354 * 13 11 10 15 15 Si 1.86795 * 120.00378 * 197.99544 * 13 11 10 16 16 H 1.48504 * 109.47206 * 89.99910 * 15 13 11 17 17 H 1.48497 * 109.47131 * 210.00084 * 15 13 11 18 18 H 1.48500 * 109.46952 * 330.00160 * 15 13 11 19 19 C 1.40908 * 119.80942 * 0.02562 * 10 9 8 20 20 C 1.36414 * 119.86328 * 359.97438 * 19 10 9 21 21 F 1.35094 * 119.96201 * 180.02562 * 20 19 10 22 22 C 1.39904 * 119.01265 * 359.52521 * 6 5 4 23 23 F 1.35098 * 119.71425 * 180.25295 * 22 6 5 24 24 N 1.31906 * 120.57078 * 0.23228 * 22 6 5 25 25 H 1.08998 * 109.47282 * 60.00224 * 1 2 3 26 26 H 1.09003 * 109.47186 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47177 * 300.00220 * 1 2 3 28 28 H 0.97006 * 120.00163 * 179.97438 * 2 1 3 29 29 H 1.07998 * 120.33623 * 359.97438 * 4 3 2 30 30 H 1.07997 * 120.79868 * 180.26781 * 5 4 3 31 31 H 1.07991 * 119.93406 * 359.97438 * 8 7 6 32 32 H 1.08001 * 120.03167 * 180.29153 * 9 8 7 33 33 H 0.97005 * 120.00210 * 180.02562 * 14 13 11 34 34 H 1.07998 * 120.06790 * 179.97438 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1586 1.2013 0.0000 4 6 1.4519 2.4023 0.0005 5 6 2.1460 3.5945 0.0059 6 6 3.5475 3.5505 0.0004 7 6 4.3369 4.7997 0.0013 8 6 4.2759 5.6632 1.1020 9 6 5.0058 6.8129 1.1102 10 6 5.8202 7.1371 0.0058 11 6 6.5776 8.3261 0.0109 12 1 6.8710 8.7834 -0.9225 13 6 6.9493 8.9138 1.2252 14 7 6.9149 8.2122 2.3291 15 14 7.4944 10.6998 1.2704 16 1 6.3138 11.5723 1.4947 17 1 8.4690 10.8922 2.3742 18 1 8.1339 11.0550 -0.0220 19 6 5.8748 6.2694 -1.1031 20 6 5.1403 5.1198 -1.1028 21 9 5.1916 4.2862 -2.1646 22 6 4.1872 2.3063 -0.0001 23 9 5.5369 2.2473 -0.0001 24 7 3.4840 1.1903 0.0000 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.9500 -0.8401 0.0004 29 1 0.3719 2.3997 0.0005 30 1 1.6225 4.5391 0.0107 31 1 3.6519 5.4150 1.9477 32 1 4.9612 7.4754 1.9619 33 1 7.1721 8.6196 3.1710 34 1 6.4969 6.5138 -1.9514 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239420519.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:29 Heat of formation + Delta-G solvation = -32.351577 kcal Electronic energy + Delta-G solvation = -21971.423125 eV Core-core repulsion = 18311.829252 eV Total energy + Delta-G solvation = -3659.593873 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 4.08 seconds Orbital eigenvalues (eV) -48.38756 -47.71240 -39.81078 -37.50222 -35.65399 -33.93799 -32.42614 -30.64155 -29.25671 -28.50179 -26.65352 -24.82888 -23.17814 -22.21657 -21.07372 -20.49000 -17.95683 -17.74117 -17.39371 -16.03200 -15.67649 -15.50253 -15.20780 -15.09314 -14.86818 -14.60671 -14.38061 -14.32101 -13.39427 -13.19977 -12.87395 -12.68800 -12.63825 -12.43920 -12.36260 -12.11652 -11.72249 -11.27003 -11.02564 -10.77385 -10.62898 -10.25897 -9.91077 -9.63476 -9.42196 -9.37236 -9.22891 -7.82706 -7.53139 -7.17196 -6.98513 -4.57747 1.41144 1.60371 2.52783 2.85266 2.97369 3.01285 3.01791 3.06022 3.77778 4.02592 4.27767 4.38345 4.91751 5.04353 5.14928 5.24065 5.36119 5.44018 5.48870 5.57430 5.68088 6.08519 6.17881 6.21206 6.49319 6.74931 6.78856 6.81248 6.89304 7.02899 7.10814 7.45034 7.46837 7.56953 7.82836 7.86773 8.04311 8.16233 8.41489 8.64241 8.72461 9.93741 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.033485 B = 0.003774 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.993943 B = 7418.087580 C = 7680.488284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.734 5.734 3 C 0.414 3.586 4 C -0.248 4.248 5 C -0.010 4.010 6 C -0.114 4.114 7 C -0.231 4.231 8 C -0.053 4.053 9 C -0.176 4.176 10 C 0.137 3.863 11 C -0.445 4.445 12 H 0.084 0.916 13 C 0.075 3.925 14 N -0.775 5.775 15 Si 0.915 3.085 16 H -0.265 1.265 17 H -0.276 1.276 18 H -0.260 1.260 19 C -0.266 4.266 20 C 0.147 3.853 21 F -0.164 7.164 22 C 0.352 3.648 23 F -0.106 7.106 24 N -0.578 5.578 25 H 0.055 0.945 26 H 0.076 0.924 27 H 0.055 0.945 28 H 0.404 0.596 29 H 0.133 0.867 30 H 0.142 0.858 31 H 0.098 0.902 32 H 0.124 0.876 33 H 0.286 0.714 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.785 -7.681 -0.679 13.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.368 5.368 3 C 0.179 3.821 4 C -0.273 4.273 5 C -0.035 4.035 6 C -0.120 4.120 7 C -0.233 4.233 8 C -0.072 4.072 9 C -0.196 4.196 10 C 0.134 3.866 11 C -0.473 4.473 12 H 0.102 0.898 13 C -0.146 4.146 14 N -0.399 5.399 15 Si 0.738 3.262 16 H -0.190 1.190 17 H -0.201 1.201 18 H -0.184 1.184 19 C -0.286 4.286 20 C 0.128 3.872 21 F -0.142 7.142 22 C 0.198 3.802 23 F -0.085 7.085 24 N -0.301 5.301 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.074 0.926 28 H 0.238 0.762 29 H 0.151 0.849 30 H 0.159 0.841 31 H 0.116 0.884 32 H 0.141 0.859 33 H 0.097 0.903 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.433 -8.445 -0.457 13.430 hybrid contribution 0.419 0.881 -0.044 0.977 sum -10.014 -7.564 -0.500 12.559 Atomic orbital electron populations 1.21554 0.78981 1.02553 1.01436 1.44091 1.05569 1.05145 1.81970 1.17746 0.86175 0.86615 0.91562 1.21257 1.00637 0.91398 1.14031 1.21433 0.92251 0.98005 0.91827 1.19198 0.93522 0.92233 1.06999 1.17588 1.09902 0.97983 0.97867 1.20263 0.98178 0.93928 0.94817 1.21014 0.99372 0.98171 1.01000 1.17447 0.88738 0.90703 0.89741 1.19656 1.28034 1.06029 0.93608 0.89751 1.26029 0.93463 1.00141 0.94947 1.69835 1.32836 1.36984 1.00208 0.86196 0.79224 0.81470 0.79283 1.18970 1.20072 1.18353 1.20604 1.08106 0.96588 1.03338 1.17238 0.97869 0.88929 0.83167 1.91345 1.95516 1.71772 1.55611 1.17964 0.78182 0.88384 0.95630 1.91613 1.27236 1.96814 1.92799 1.66056 1.07480 1.31914 1.24691 0.92643 0.90554 0.92643 0.76173 0.84916 0.84065 0.88437 0.85864 0.90297 0.87580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.72 9.91 59.84 0.59 1.31 16 2 N -0.73 -8.25 5.87 -67.19 -0.39 -8.65 16 3 C 0.41 6.36 7.64 -155.09 -1.19 5.18 16 4 C -0.25 -3.51 9.30 -39.27 -0.37 -3.88 16 5 C -0.01 -0.16 9.88 -38.94 -0.38 -0.54 16 6 C -0.11 -2.29 5.01 -104.63 -0.52 -2.82 16 7 C -0.23 -5.23 5.06 -104.57 -0.53 -5.76 16 8 C -0.05 -1.20 9.67 -39.65 -0.38 -1.58 16 9 C -0.18 -4.33 8.62 -39.28 -0.34 -4.67 16 10 C 0.14 3.50 5.57 -106.81 -0.60 2.91 16 11 C -0.45 -11.15 9.02 -37.91 -0.34 -11.50 16 12 H 0.08 2.02 7.91 -52.49 -0.42 1.61 16 13 C 0.07 1.76 5.13 -17.34 -0.09 1.67 16 14 N -0.78 -18.81 10.96 55.55 0.61 -18.20 16 15 Si 0.91 17.44 29.60 -169.99 -5.03 12.41 16 16 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 17 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16 18 H -0.26 -4.93 7.11 56.52 0.40 -4.52 16 19 C -0.27 -6.60 9.70 -39.23 -0.38 -6.98 16 20 C 0.15 3.55 7.03 -39.48 -0.28 3.27 16 21 F -0.16 -3.86 16.67 2.25 0.04 -3.83 16 22 C 0.35 7.30 8.22 -16.90 -0.14 7.16 16 23 F -0.11 -2.37 16.71 2.25 0.04 -2.33 16 24 N -0.58 -10.83 10.39 -12.41 -0.13 -10.96 16 25 H 0.05 0.38 7.91 -51.93 -0.41 -0.03 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.38 7.91 -51.93 -0.41 -0.03 16 28 H 0.40 4.16 8.95 -40.82 -0.37 3.79 16 29 H 0.13 1.42 6.67 -52.49 -0.35 1.07 16 30 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16 31 H 0.10 1.96 8.06 -52.49 -0.42 1.54 16 32 H 0.12 3.06 6.16 -52.49 -0.32 2.74 16 33 H 0.29 6.25 8.30 -40.82 -0.34 5.91 16 34 H 0.11 2.51 8.06 -52.49 -0.42 2.09 16 LS Contribution 307.40 15.07 4.63 4.63 Total: -1.00 -28.52 307.40 -8.28 -36.80 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -3.10 Total: 6.35 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -4.94 Total: -16.23 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.09 Total: -37.80 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 0.08 Total: -6.16 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.03 Total: 12.41 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.52 -8.28 -36.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239420519.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.445 kcal (2) G-P(sol) polarization free energy of solvation -28.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.08 seconds