Wall clock time and date at job start Tue Mar 31 2020 08:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.38718 * 120.00063 * 2 1 4 4 C 1.39345 * 119.52606 * 0.02562 * 3 2 1 5 5 C 1.37955 * 119.31903 * 179.74591 * 4 3 2 6 6 C 1.40218 * 118.40572 * 0.47271 * 5 4 3 7 7 C 1.47775 * 120.49050 * 179.79831 * 6 5 4 8 8 C 1.40038 * 119.89959 * 64.72805 * 7 6 5 9 9 C 1.36180 * 120.12895 * 179.72244 * 8 7 6 10 10 C 1.40999 * 119.93607 * 0.26967 * 9 8 7 11 11 C 1.40973 * 120.09596 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99557 * 204.74031 * 11 10 9 13 13 C 1.39933 * 120.00380 * 24.73932 * 11 10 9 14 14 N 1.30844 * 119.99692 * 17.99354 * 13 11 10 15 15 Si 1.86795 * 120.00378 * 197.99544 * 13 11 10 16 16 H 1.48504 * 109.47206 * 89.99910 * 15 13 11 17 17 H 1.48497 * 109.47131 * 210.00084 * 15 13 11 18 18 H 1.48500 * 109.46952 * 330.00160 * 15 13 11 19 19 C 1.40908 * 119.80942 * 0.02562 * 10 9 8 20 20 C 1.36414 * 119.86328 * 359.97438 * 19 10 9 21 21 F 1.35094 * 119.96201 * 180.02562 * 20 19 10 22 22 C 1.39904 * 119.01265 * 359.52521 * 6 5 4 23 23 F 1.35098 * 119.71425 * 180.25295 * 22 6 5 24 24 N 1.31906 * 120.57078 * 0.23228 * 22 6 5 25 25 H 1.08998 * 109.47282 * 60.00224 * 1 2 3 26 26 H 1.09003 * 109.47186 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47177 * 300.00220 * 1 2 3 28 28 H 0.97006 * 120.00163 * 179.97438 * 2 1 3 29 29 H 1.07998 * 120.33623 * 359.97438 * 4 3 2 30 30 H 1.07997 * 120.79868 * 180.26781 * 5 4 3 31 31 H 1.07991 * 119.93406 * 359.97438 * 8 7 6 32 32 H 1.08001 * 120.03167 * 180.29153 * 9 8 7 33 33 H 0.97005 * 120.00210 * 180.02562 * 14 13 11 34 34 H 1.07998 * 120.06790 * 179.97438 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1586 1.2013 0.0000 4 6 1.4519 2.4023 0.0005 5 6 2.1460 3.5945 0.0059 6 6 3.5475 3.5505 0.0004 7 6 4.3369 4.7997 0.0013 8 6 4.2759 5.6632 1.1020 9 6 5.0058 6.8129 1.1102 10 6 5.8202 7.1371 0.0058 11 6 6.5776 8.3261 0.0109 12 1 6.8710 8.7834 -0.9225 13 6 6.9493 8.9138 1.2252 14 7 6.9149 8.2122 2.3291 15 14 7.4944 10.6998 1.2704 16 1 6.3138 11.5723 1.4947 17 1 8.4690 10.8922 2.3742 18 1 8.1339 11.0550 -0.0220 19 6 5.8748 6.2694 -1.1031 20 6 5.1403 5.1198 -1.1028 21 9 5.1916 4.2862 -2.1646 22 6 4.1872 2.3063 -0.0001 23 9 5.5369 2.2473 -0.0001 24 7 3.4840 1.1903 0.0000 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.9500 -0.8401 0.0004 29 1 0.3719 2.3997 0.0005 30 1 1.6225 4.5391 0.0107 31 1 3.6519 5.4150 1.9477 32 1 4.9612 7.4754 1.9619 33 1 7.1721 8.6196 3.1710 34 1 6.4969 6.5138 -1.9514 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239420519.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:26 Heat of formation + Delta-G solvation = -47.951830 kcal Electronic energy + Delta-G solvation = -21972.099603 eV Core-core repulsion = 18311.829252 eV Total energy + Delta-G solvation = -3660.270351 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -50.00298 -49.57644 -41.09541 -39.28863 -36.77743 -35.62245 -33.85986 -32.16830 -31.03180 -30.03413 -27.82831 -26.26225 -24.51251 -23.65390 -22.91891 -22.13477 -19.59520 -19.12520 -18.77057 -17.69527 -17.21577 -16.99958 -16.88030 -16.71582 -16.39637 -16.20388 -15.83261 -15.29889 -15.01226 -14.54340 -14.46326 -14.22402 -14.09337 -13.83670 -13.69765 -13.43356 -12.93967 -12.83026 -12.81430 -12.49065 -12.26168 -11.94979 -11.48294 -11.11670 -11.06695 -10.72312 -10.61350 -9.57651 -9.27307 -8.77734 -8.55233 -6.45964 0.03752 0.28331 0.79682 0.94374 1.41055 1.50805 1.55030 1.99435 2.18954 2.56098 2.72515 3.02148 3.52356 3.75103 3.78725 3.89458 4.12067 4.26539 4.35387 4.51448 4.73404 4.77597 4.86562 4.94779 4.96317 5.01099 5.04235 5.17497 5.26590 5.45590 5.61534 5.71708 5.96078 5.98046 6.02490 6.19446 6.43394 6.54506 6.78306 6.85079 6.98604 8.20495 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.033485 B = 0.003774 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.993943 B = 7418.087580 C = 7680.488284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.723 5.723 3 C 0.413 3.587 4 C -0.229 4.229 5 C -0.004 4.004 6 C -0.148 4.148 7 C -0.217 4.217 8 C -0.051 4.051 9 C -0.190 4.190 10 C 0.111 3.889 11 C -0.479 4.479 12 H 0.083 0.917 13 C 0.038 3.962 14 N -0.806 5.806 15 Si 0.989 3.011 16 H -0.257 1.257 17 H -0.267 1.267 18 H -0.259 1.259 19 C -0.285 4.285 20 C 0.130 3.870 21 F -0.164 7.164 22 C 0.325 3.675 23 F -0.130 7.130 24 N -0.600 5.600 25 H 0.065 0.935 26 H 0.105 0.895 27 H 0.067 0.933 28 H 0.408 0.592 29 H 0.178 0.822 30 H 0.164 0.836 31 H 0.124 0.876 32 H 0.117 0.883 33 H 0.296 0.704 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.520 -8.210 -0.115 15.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.355 5.355 3 C 0.175 3.825 4 C -0.253 4.253 5 C -0.029 4.029 6 C -0.154 4.154 7 C -0.220 4.220 8 C -0.070 4.070 9 C -0.209 4.209 10 C 0.108 3.892 11 C -0.507 4.507 12 H 0.101 0.899 13 C -0.180 4.180 14 N -0.430 5.430 15 Si 0.809 3.191 16 H -0.181 1.181 17 H -0.191 1.191 18 H -0.183 1.183 19 C -0.306 4.306 20 C 0.111 3.889 21 F -0.143 7.143 22 C 0.173 3.827 23 F -0.109 7.109 24 N -0.325 5.325 25 H 0.084 0.916 26 H 0.124 0.876 27 H 0.085 0.915 28 H 0.243 0.757 29 H 0.195 0.805 30 H 0.181 0.819 31 H 0.142 0.858 32 H 0.135 0.865 33 H 0.107 0.893 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.209 -9.027 0.102 15.999 hybrid contribution 1.058 0.767 -0.231 1.327 sum -12.150 -8.260 -0.129 14.693 Atomic orbital electron populations 1.21928 0.76072 1.05019 1.02381 1.44423 1.07280 1.03978 1.79801 1.18278 0.85437 0.88703 0.90057 1.21661 1.02605 0.89838 1.11193 1.21689 0.90581 1.00001 0.90613 1.19163 0.95056 0.90650 1.10532 1.17848 1.08749 0.98672 0.96723 1.20519 0.97826 0.93119 0.95493 1.21039 1.00087 0.99106 1.00698 1.17744 0.89622 0.91413 0.90376 1.19894 1.29398 1.06813 0.94554 0.89887 1.26866 0.92911 1.04236 0.93946 1.69862 1.33260 1.38859 1.00978 0.85084 0.79026 0.75630 0.79333 1.18084 1.19094 1.18276 1.20710 1.08974 0.97280 1.03587 1.17462 0.98640 0.88875 0.83888 1.91326 1.95585 1.71728 1.55706 1.18121 0.77607 0.89389 0.97592 1.91540 1.29056 1.96992 1.93292 1.66078 1.09168 1.31155 1.26122 0.91621 0.87646 0.91480 0.75677 0.80452 0.81880 0.85821 0.86512 0.89330 0.87739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.83 9.91 127.77 1.27 2.10 16 2 N -0.72 -13.58 5.87 -366.50 -2.15 -15.73 16 3 C 0.41 11.52 7.64 133.17 1.02 12.54 16 4 C -0.23 -5.56 9.30 22.47 0.21 -5.35 16 5 C 0.00 -0.11 9.88 22.68 0.22 0.11 16 6 C -0.15 -5.88 5.01 -19.87 -0.10 -5.98 16 7 C -0.22 -10.00 5.06 -19.83 -0.10 -10.10 16 8 C -0.05 -2.32 9.67 22.23 0.21 -2.11 16 9 C -0.19 -9.60 8.62 22.47 0.19 -9.41 16 10 C 0.11 5.95 5.57 -21.28 -0.12 5.83 16 11 C -0.48 -24.86 9.02 23.35 0.21 -24.65 16 12 H 0.08 4.15 7.91 -2.91 -0.02 4.13 16 13 C 0.04 1.83 5.13 85.25 0.44 2.26 16 14 N -0.81 -39.74 10.96 21.83 0.24 -39.50 16 15 Si 0.99 35.74 29.60 68.60 2.03 37.77 16 16 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 17 H -0.27 -9.15 7.11 99.48 0.71 -8.44 16 18 H -0.26 -9.23 7.11 99.48 0.71 -8.53 16 19 C -0.29 -14.85 9.70 22.50 0.22 -14.63 16 20 C 0.13 6.51 7.03 22.33 0.16 6.67 16 21 F -0.16 -8.04 16.67 44.97 0.75 -7.30 16 22 C 0.33 13.63 8.22 85.09 0.70 14.33 16 23 F -0.13 -6.06 16.71 44.97 0.75 -5.31 16 24 N -0.60 -22.02 10.39 -193.19 -2.01 -24.02 16 25 H 0.07 0.55 7.91 -2.39 -0.02 0.53 16 26 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.07 0.54 7.91 -2.39 -0.02 0.52 16 28 H 0.41 7.17 8.95 -92.70 -0.83 6.34 16 29 H 0.18 2.70 6.67 -2.91 -0.02 2.68 16 30 H 0.16 4.12 8.06 -2.91 -0.02 4.10 16 31 H 0.12 4.87 8.06 -2.92 -0.02 4.84 16 32 H 0.12 5.97 6.16 -2.91 -0.02 5.95 16 33 H 0.30 12.98 8.30 -92.70 -0.77 12.21 16 34 H 0.10 5.26 8.06 -2.91 -0.02 5.23 16 Total: -1.00 -65.12 307.40 4.47 -60.65 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.33 Total: 21.84 kcal Atomic # 6 Polarization: -32.92 SS G_CDS: 4.53 Total: -28.39 kcal Atomic # 7 Polarization: -75.34 SS G_CDS: -3.92 Total: -79.26 kcal Atomic # 9 Polarization: -14.11 SS G_CDS: 1.50 Total: -12.60 kcal Atomic # 14 Polarization: 35.74 SS G_CDS: 2.03 Total: 37.77 kcal Total: -65.12 4.47 -60.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239420519.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.695 kcal (2) G-P(sol) polarization free energy of solvation -65.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds