Wall clock time and date at job start Tue Mar 31 2020 08:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.38935 * 120.00233 * 2 1 4 4 C 1.39169 * 119.55590 * 359.97438 * 3 2 1 5 5 C 1.38143 * 119.28032 * 180.02562 * 4 3 2 6 6 C 1.39858 * 118.42581 * 359.75633 * 5 4 3 7 7 C 1.48340 * 120.46389 * 180.23707 * 6 5 4 8 8 C 1.39609 * 120.01662 * 65.25444 * 7 6 5 9 9 C 1.38463 * 120.42144 * 179.97438 * 8 7 6 10 10 C 1.37664 * 120.45223 * 0.02562 * 9 8 7 11 11 C 1.40756 * 120.01971 * 0.02562 * 10 9 8 12 12 C 1.41324 * 120.20536 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99925 * 150.10973 * 12 11 10 14 14 C 1.39922 * 119.99830 * 330.10606 * 12 11 10 15 15 N 1.30859 * 119.99995 * 161.78385 * 14 12 11 16 16 Si 1.86800 * 120.00112 * 341.78882 * 14 12 11 17 17 H 1.48501 * 109.47189 * 95.40883 * 16 14 12 18 18 H 1.48508 * 109.46995 * 215.40657 * 16 14 12 19 19 H 1.48498 * 109.47051 * 335.40595 * 16 14 12 20 20 C 1.39087 * 120.01983 * 244.97867 * 7 6 5 21 21 F 1.35091 * 120.22184 * 359.97438 * 20 7 6 22 22 C 1.39496 * 119.07008 * 0.48786 * 6 5 4 23 23 F 1.35091 * 119.68878 * 179.77671 * 22 6 5 24 24 N 1.31994 * 120.62134 * 359.49978 * 22 6 5 25 25 H 1.08998 * 109.47604 * 299.99878 * 1 2 3 26 26 H 1.09006 * 109.47156 * 60.00446 * 1 2 3 27 27 H 1.09004 * 109.47613 * 179.97438 * 1 2 3 28 28 H 0.97003 * 120.00209 * 180.02562 * 2 1 3 29 29 H 1.08000 * 120.35592 * 0.02562 * 4 3 2 30 30 H 1.07995 * 120.78236 * 179.97438 * 5 4 3 31 31 H 1.08004 * 119.78972 * 359.97438 * 8 7 6 32 32 H 1.08002 * 119.78019 * 180.02562 * 9 8 7 33 33 H 1.08001 * 119.98793 * 180.02562 * 10 9 8 34 34 H 0.96994 * 119.99646 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1597 1.2032 0.0000 4 6 1.4545 2.4030 -0.0005 5 6 2.1511 3.5960 -0.0011 6 6 3.5489 3.5508 0.0042 7 6 4.3419 4.8045 0.0091 8 6 4.2834 5.6635 1.1081 9 6 5.0205 6.8356 1.1218 10 6 5.8201 7.1695 0.0521 11 6 5.8923 6.3176 -1.0661 12 6 6.7123 6.6563 -2.1662 13 1 7.1566 5.8777 -2.7684 14 6 6.9485 8.0004 -2.4750 15 7 7.9595 8.3285 -3.2384 16 14 5.8207 9.3266 -1.7976 17 1 6.4064 9.8863 -0.5531 18 1 5.6690 10.4086 -2.8035 19 1 4.4901 8.7392 -1.4980 20 6 5.1485 5.1219 -1.0786 21 9 5.2137 4.2915 -2.1421 22 6 4.1870 2.3103 -0.0006 23 9 5.5366 2.2521 -0.0002 24 7 3.4844 1.1929 -0.0001 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.9500 -0.8401 -0.0004 29 1 0.3745 2.4014 -0.0005 30 1 1.6285 4.5411 -0.0019 31 1 3.6593 5.4122 1.9529 32 1 4.9678 7.4924 1.9775 33 1 6.3922 8.0853 0.0709 34 1 8.1233 9.2603 -3.4521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239420884.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:42 Heat of formation + Delta-G solvation = -27.729629 kcal Electronic energy + Delta-G solvation = -22263.065784 eV Core-core repulsion = 18603.672334 eV Total energy + Delta-G solvation = -3659.393450 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -48.55173 -47.38029 -40.01123 -37.65619 -35.77704 -33.89523 -32.69346 -30.97536 -30.02964 -28.28511 -26.21044 -25.23963 -23.38321 -22.74787 -20.88741 -20.69852 -18.13058 -17.60521 -17.47026 -16.51868 -15.82400 -15.70397 -15.25838 -15.20188 -14.94370 -14.57755 -14.47200 -14.12631 -13.62778 -13.35597 -13.04062 -12.87021 -12.75264 -12.58213 -12.35750 -12.06779 -11.94647 -11.55036 -11.08898 -10.88407 -10.52178 -10.16721 -9.87417 -9.84150 -9.54058 -9.51259 -9.23933 -7.98620 -7.66077 -7.36205 -7.04162 -4.57081 1.23581 1.41358 2.33475 2.42560 2.89819 3.03915 3.14879 3.24735 3.85570 3.90100 4.12501 4.32160 4.81661 4.87291 4.98541 5.10717 5.16490 5.22161 5.35284 5.39800 5.61820 5.86729 5.97124 6.04413 6.20131 6.32274 6.39171 6.59048 6.71700 6.93435 6.97617 7.22535 7.34806 7.38143 7.50321 7.65012 7.87355 8.00833 8.25814 8.47926 8.64755 9.97549 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.029066 B = 0.004458 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.079081 B = 6279.924412 C = 6539.835880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.732 5.732 3 C 0.424 3.576 4 C -0.250 4.250 5 C 0.003 3.997 6 C -0.149 4.149 7 C -0.048 4.048 8 C -0.204 4.204 9 C -0.084 4.084 10 C -0.217 4.217 11 C 0.067 3.933 12 C -0.436 4.436 13 H 0.096 0.904 14 C 0.084 3.916 15 N -0.799 5.799 16 Si 0.912 3.088 17 H -0.267 1.267 18 H -0.288 1.288 19 H -0.242 1.242 20 C 0.014 3.986 21 F -0.151 7.151 22 C 0.368 3.632 23 F -0.102 7.102 24 N -0.577 5.577 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.405 0.595 29 H 0.137 0.863 30 H 0.145 0.855 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.036 -8.413 6.622 17.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.365 5.365 3 C 0.188 3.812 4 C -0.275 4.275 5 C -0.022 4.022 6 C -0.155 4.155 7 C -0.050 4.050 8 C -0.224 4.224 9 C -0.102 4.102 10 C -0.237 4.237 11 C 0.063 3.937 12 C -0.464 4.464 13 H 0.114 0.886 14 C -0.136 4.136 15 N -0.422 5.422 16 Si 0.737 3.263 17 H -0.193 1.193 18 H -0.215 1.215 19 H -0.165 1.165 20 C -0.006 4.006 21 F -0.130 7.130 22 C 0.215 3.785 23 F -0.080 7.080 24 N -0.300 5.300 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.096 0.904 28 H 0.240 0.760 29 H 0.154 0.846 30 H 0.162 0.838 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.564 -9.047 6.389 17.512 hybrid contribution -0.176 0.845 -0.032 0.864 sum -13.740 -8.202 6.357 17.218 Atomic orbital electron populations 1.21588 0.78783 1.02758 1.01540 1.44193 1.05699 1.05134 1.81496 1.17785 0.86171 0.86711 0.90497 1.21267 1.00867 0.91235 1.14104 1.21313 0.91806 0.98353 0.90777 1.19263 0.94077 0.92392 1.09787 1.18009 0.98587 0.93365 0.94989 1.20193 1.07237 0.96951 0.97971 1.20546 0.96363 0.95991 0.97338 1.20907 1.05999 1.02239 0.94545 1.17625 0.91453 0.90628 0.93992 1.19428 1.22829 0.93729 1.10387 0.88622 1.26175 0.94237 0.99995 0.93162 1.69697 1.23084 1.20954 1.28431 0.86299 0.82954 0.78915 0.78104 1.19315 1.21530 1.16540 1.17772 1.03645 0.93630 0.85564 1.91319 1.95554 1.70936 1.55143 1.17691 0.78317 0.88101 0.94399 1.91647 1.26987 1.96797 1.92602 1.66129 1.07547 1.31488 1.24859 0.92528 0.92493 0.90393 0.75992 0.84551 0.83753 0.87800 0.87921 0.87358 0.90172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.63 9.91 59.84 0.59 1.22 16 2 N -0.73 -7.58 5.88 -67.20 -0.40 -7.97 16 3 C 0.42 6.08 7.64 -155.01 -1.18 4.90 16 4 C -0.25 -3.26 9.31 -39.27 -0.37 -3.62 16 5 C 0.00 0.04 9.88 -39.01 -0.39 -0.34 16 6 C -0.15 -2.85 5.02 -104.66 -0.53 -3.37 16 7 C -0.05 -1.03 5.03 -104.91 -0.53 -1.56 16 8 C -0.20 -4.08 9.74 -38.99 -0.38 -4.46 16 9 C -0.08 -1.72 10.01 -39.71 -0.40 -2.12 16 10 C -0.22 -5.09 7.16 -38.84 -0.28 -5.36 16 11 C 0.07 1.72 5.10 -106.80 -0.55 1.17 16 12 C -0.44 -12.02 9.26 -37.78 -0.35 -12.37 16 13 H 0.10 2.84 7.97 -52.49 -0.42 2.42 16 14 C 0.08 2.20 5.40 -17.34 -0.09 2.10 16 15 N -0.80 -21.13 13.93 55.55 0.77 -20.36 16 16 Si 0.91 20.17 24.52 -169.99 -4.17 16.00 16 17 H -0.27 -5.63 6.71 56.52 0.38 -5.25 16 18 H -0.29 -6.14 7.11 56.52 0.40 -5.73 16 19 H -0.24 -5.45 6.86 56.52 0.39 -5.06 16 20 C 0.01 0.35 7.06 -38.29 -0.27 0.08 16 21 F -0.15 -3.87 16.16 2.25 0.04 -3.83 16 22 C 0.37 7.28 8.18 -17.01 -0.14 7.14 16 23 F -0.10 -2.19 16.68 2.25 0.04 -2.15 16 24 N -0.58 -10.23 10.39 -12.51 -0.13 -10.36 16 25 H 0.06 0.33 7.92 -51.93 -0.41 -0.08 16 26 H 0.06 0.35 7.92 -51.93 -0.41 -0.06 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.41 3.84 8.95 -40.82 -0.37 3.47 16 29 H 0.14 1.30 6.67 -52.49 -0.35 0.95 16 30 H 0.14 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.10 1.79 8.06 -52.48 -0.42 1.36 16 32 H 0.10 1.77 8.06 -52.49 -0.42 1.34 16 33 H 0.11 2.48 4.73 -52.49 -0.25 2.23 16 34 H 0.29 6.82 8.30 -40.82 -0.34 6.48 16 LS Contribution 301.71 15.07 4.55 4.55 Total: -1.00 -30.09 301.71 -7.21 -37.30 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -3.07 Total: 3.42 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -4.85 Total: -16.60 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.25 Total: -38.69 kcal Atomic # 9 Polarization: -6.06 SS G_CDS: 0.07 Total: -5.98 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.17 Total: 16.00 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.09 -7.21 -37.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239420884.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.571 kcal (2) G-P(sol) polarization free energy of solvation -30.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds