Wall clock time and date at job start Tue Mar 31 2020 08:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.38935 * 120.00233 * 2 1 4 4 C 1.39169 * 119.55590 * 359.97438 * 3 2 1 5 5 C 1.38143 * 119.28032 * 180.02562 * 4 3 2 6 6 C 1.39858 * 118.42581 * 359.75633 * 5 4 3 7 7 C 1.48340 * 120.46389 * 180.23707 * 6 5 4 8 8 C 1.39609 * 120.01662 * 65.25444 * 7 6 5 9 9 C 1.38463 * 120.42144 * 179.97438 * 8 7 6 10 10 C 1.37664 * 120.45223 * 0.02562 * 9 8 7 11 11 C 1.40756 * 120.01971 * 0.02562 * 10 9 8 12 12 C 1.41324 * 120.20536 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99925 * 150.10973 * 12 11 10 14 14 C 1.39922 * 119.99830 * 330.10606 * 12 11 10 15 15 N 1.30859 * 119.99995 * 161.78385 * 14 12 11 16 16 Si 1.86800 * 120.00112 * 341.78882 * 14 12 11 17 17 H 1.48501 * 109.47189 * 95.40883 * 16 14 12 18 18 H 1.48508 * 109.46995 * 215.40657 * 16 14 12 19 19 H 1.48498 * 109.47051 * 335.40595 * 16 14 12 20 20 C 1.39087 * 120.01983 * 244.97867 * 7 6 5 21 21 F 1.35091 * 120.22184 * 359.97438 * 20 7 6 22 22 C 1.39496 * 119.07008 * 0.48786 * 6 5 4 23 23 F 1.35091 * 119.68878 * 179.77671 * 22 6 5 24 24 N 1.31994 * 120.62134 * 359.49978 * 22 6 5 25 25 H 1.08998 * 109.47604 * 299.99878 * 1 2 3 26 26 H 1.09006 * 109.47156 * 60.00446 * 1 2 3 27 27 H 1.09004 * 109.47613 * 179.97438 * 1 2 3 28 28 H 0.97003 * 120.00209 * 180.02562 * 2 1 3 29 29 H 1.08000 * 120.35592 * 0.02562 * 4 3 2 30 30 H 1.07995 * 120.78236 * 179.97438 * 5 4 3 31 31 H 1.08004 * 119.78972 * 359.97438 * 8 7 6 32 32 H 1.08002 * 119.78019 * 180.02562 * 9 8 7 33 33 H 1.08001 * 119.98793 * 180.02562 * 10 9 8 34 34 H 0.96994 * 119.99646 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1597 1.2032 0.0000 4 6 1.4545 2.4030 -0.0005 5 6 2.1511 3.5960 -0.0011 6 6 3.5489 3.5508 0.0042 7 6 4.3419 4.8045 0.0091 8 6 4.2834 5.6635 1.1081 9 6 5.0205 6.8356 1.1218 10 6 5.8201 7.1695 0.0521 11 6 5.8923 6.3176 -1.0661 12 6 6.7123 6.6563 -2.1662 13 1 7.1566 5.8777 -2.7684 14 6 6.9485 8.0004 -2.4750 15 7 7.9595 8.3285 -3.2384 16 14 5.8207 9.3266 -1.7976 17 1 6.4064 9.8863 -0.5531 18 1 5.6690 10.4086 -2.8035 19 1 4.4901 8.7392 -1.4980 20 6 5.1485 5.1219 -1.0786 21 9 5.2137 4.2915 -2.1421 22 6 4.1870 2.3103 -0.0006 23 9 5.5366 2.2521 -0.0002 24 7 3.4844 1.1929 -0.0001 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.9500 -0.8401 -0.0004 29 1 0.3745 2.4014 -0.0005 30 1 1.6285 4.5411 -0.0019 31 1 3.6593 5.4122 1.9529 32 1 4.9678 7.4924 1.9775 33 1 6.3922 8.0853 0.0709 34 1 8.1233 9.2603 -3.4521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239420884.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:41 Heat of formation + Delta-G solvation = -47.167718 kcal Electronic energy + Delta-G solvation = -22263.908683 eV Core-core repulsion = 18603.672334 eV Total energy + Delta-G solvation = -3660.236349 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -50.07653 -49.30048 -41.20688 -39.36935 -36.81863 -35.65667 -34.09029 -32.46219 -31.67753 -29.58297 -27.29066 -26.95938 -24.60260 -24.09620 -22.52204 -22.37340 -19.47978 -19.09396 -18.83808 -18.31747 -17.39294 -17.01586 -16.85444 -16.80207 -16.30318 -16.04219 -15.85405 -15.33740 -15.32608 -14.76263 -14.56711 -14.20719 -14.09161 -13.85904 -13.72018 -13.62620 -13.34771 -12.94670 -12.83592 -12.53230 -12.17946 -11.89146 -11.62218 -11.19618 -11.04201 -10.82323 -10.66132 -9.61927 -9.37746 -8.95197 -8.63994 -6.58450 -0.06787 0.19375 0.63266 0.66892 1.26150 1.41281 1.50707 1.93265 2.11132 2.48371 2.65152 2.94684 3.27170 3.60739 3.72852 3.85987 4.00631 4.18957 4.35282 4.46352 4.55260 4.70284 4.72765 4.74112 4.87253 4.90672 4.98896 5.08055 5.19550 5.40412 5.51444 5.59650 5.73590 5.83221 5.96091 6.02795 6.26121 6.38118 6.59702 6.68042 6.92798 8.14106 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.029066 B = 0.004458 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.079081 B = 6279.924412 C = 6539.835880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.722 5.722 3 C 0.419 3.581 4 C -0.229 4.229 5 C 0.008 3.992 6 C -0.180 4.180 7 C -0.040 4.040 8 C -0.180 4.180 9 C -0.078 4.078 10 C -0.223 4.223 11 C 0.048 3.952 12 C -0.486 4.486 13 H 0.043 0.957 14 C 0.045 3.955 15 N -0.846 5.846 16 Si 0.971 3.029 17 H -0.243 1.243 18 H -0.275 1.275 19 H -0.246 1.246 20 C -0.025 4.025 21 F -0.169 7.169 22 C 0.338 3.662 23 F -0.128 7.128 24 N -0.601 5.601 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.105 0.895 28 H 0.409 0.591 29 H 0.182 0.818 30 H 0.172 0.828 31 H 0.147 0.853 32 H 0.151 0.849 33 H 0.113 0.887 34 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.594 -8.190 9.687 22.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.353 5.353 3 C 0.181 3.819 4 C -0.253 4.253 5 C -0.017 4.017 6 C -0.187 4.187 7 C -0.042 4.042 8 C -0.199 4.199 9 C -0.096 4.096 10 C -0.243 4.243 11 C 0.045 3.955 12 C -0.515 4.515 13 H 0.061 0.939 14 C -0.169 4.169 15 N -0.472 5.472 16 Si 0.792 3.208 17 H -0.167 1.167 18 H -0.201 1.201 19 H -0.170 1.170 20 C -0.045 4.045 21 F -0.148 7.148 22 C 0.186 3.814 23 F -0.108 7.108 24 N -0.326 5.326 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.123 0.877 28 H 0.244 0.756 29 H 0.199 0.801 30 H 0.189 0.811 31 H 0.165 0.835 32 H 0.168 0.832 33 H 0.131 0.869 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.150 -8.870 9.463 22.308 hybrid contribution 0.983 0.430 -0.833 1.358 sum -17.167 -8.440 8.630 20.986 Atomic orbital electron populations 1.21958 0.75919 1.05111 1.02535 1.44532 1.07381 1.04012 1.79401 1.18326 0.85398 0.88826 0.89308 1.21693 1.02823 0.89674 1.11106 1.21624 0.90005 1.00428 0.89624 1.19253 0.95643 0.90723 1.13055 1.18356 0.97274 0.94561 0.93992 1.20809 1.05656 0.95573 0.97838 1.21068 0.94492 0.96571 0.97478 1.21109 1.06589 1.01995 0.94580 1.17816 0.91532 0.91897 0.94290 1.19300 1.26176 0.93698 1.12284 0.93864 1.26987 0.95282 1.01398 0.93279 1.69732 1.24808 1.22029 1.30615 0.85416 0.80462 0.76204 0.78717 1.16736 1.20126 1.16962 1.18254 1.05642 0.93893 0.86701 1.91255 1.95853 1.71452 1.56252 1.17917 0.77657 0.89277 0.96554 1.91568 1.29050 1.96995 1.93150 1.66127 1.09331 1.30886 1.26251 0.91096 0.91625 0.87688 0.75617 0.80059 0.81094 0.83545 0.83175 0.86922 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 9.91 127.77 1.27 1.94 16 2 N -0.72 -12.39 5.88 -366.52 -2.16 -14.54 16 3 C 0.42 10.84 7.64 133.07 1.02 11.86 16 4 C -0.23 -4.94 9.31 22.47 0.21 -4.74 16 5 C 0.01 0.22 9.88 22.64 0.22 0.44 16 6 C -0.18 -6.66 5.02 -19.89 -0.10 -6.76 16 7 C -0.04 -1.71 5.03 -20.05 -0.10 -1.81 16 8 C -0.18 -6.51 9.74 22.65 0.22 -6.28 16 9 C -0.08 -2.90 10.01 22.19 0.22 -2.68 16 10 C -0.22 -10.21 7.16 22.75 0.16 -10.05 16 11 C 0.05 2.56 5.10 -21.27 -0.11 2.45 16 12 C -0.49 -29.04 9.26 23.44 0.22 -28.82 16 13 H 0.04 2.90 7.97 -2.91 -0.02 2.87 16 14 C 0.05 2.49 5.40 85.25 0.46 2.95 16 15 N -0.85 -47.58 13.93 21.82 0.30 -47.27 16 16 Si 0.97 41.64 24.52 68.60 1.68 43.32 16 17 H -0.24 -9.38 6.71 99.48 0.67 -8.72 16 18 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 19 H -0.25 -10.58 6.86 99.48 0.68 -9.90 16 20 C -0.02 -1.28 7.06 23.11 0.16 -1.12 16 21 F -0.17 -9.39 16.16 44.97 0.73 -8.66 16 22 C 0.34 13.55 8.18 84.97 0.70 14.24 16 23 F -0.13 -5.87 16.68 44.97 0.75 -5.12 16 24 N -0.60 -20.99 10.39 -193.49 -2.01 -23.00 16 25 H 0.07 0.42 7.92 -2.39 -0.02 0.40 16 26 H 0.07 0.46 7.92 -2.38 -0.02 0.44 16 27 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.41 6.63 8.95 -92.71 -0.83 5.80 16 29 H 0.18 2.26 6.67 -2.91 -0.02 2.24 16 30 H 0.17 3.60 8.06 -2.91 -0.02 3.57 16 31 H 0.15 4.13 8.06 -2.91 -0.02 4.11 16 32 H 0.15 4.21 8.06 -2.91 -0.02 4.18 16 33 H 0.11 4.99 4.73 -2.91 -0.01 4.98 16 34 H 0.30 14.77 8.30 -92.71 -0.77 14.00 16 Total: -1.00 -73.84 301.71 4.12 -69.72 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.27 Total: 13.91 kcal Atomic # 6 Polarization: -32.91 SS G_CDS: 4.55 Total: -28.36 kcal Atomic # 7 Polarization: -80.95 SS G_CDS: -3.86 Total: -84.81 kcal Atomic # 9 Polarization: -15.25 SS G_CDS: 1.48 Total: -13.78 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 1.68 Total: 43.32 kcal Total: -73.84 4.12 -69.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239420884.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.549 kcal (2) G-P(sol) polarization free energy of solvation -73.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds