Wall clock time and date at job start Tue Mar 31 2020 08:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.38918 * 119.99585 * 2 1 4 4 C 1.39173 * 119.56108 * 0.23637 * 3 2 1 5 5 C 1.38130 * 119.28635 * 180.27487 * 4 3 2 6 6 C 1.39871 * 118.42311 * 359.50193 * 5 4 3 7 7 C 1.48325 * 120.46681 * 180.23297 * 6 5 4 8 8 C 1.38689 * 120.01850 * 64.99531 * 7 6 5 9 9 C 1.40543 * 119.65740 * 179.97438 * 8 7 6 10 10 C 1.41334 * 120.15483 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99506 * 204.54373 * 10 9 8 12 12 C 1.39884 * 120.00195 * 24.55059 * 10 9 8 13 13 N 1.30870 * 120.00069 * 17.91699 * 12 10 9 14 14 Si 1.86801 * 119.99904 * 197.92457 * 12 10 9 15 15 H 1.48503 * 109.47014 * 89.99881 * 14 12 10 16 16 H 1.48501 * 109.46931 * 209.99276 * 14 12 10 17 17 H 1.48494 * 109.47293 * 329.99396 * 14 12 10 18 18 C 1.40858 * 119.68843 * 0.02562 * 9 8 7 19 19 C 1.37578 * 120.02583 * 359.97438 * 18 9 8 20 20 C 1.38739 * 120.35062 * 359.78502 * 19 18 9 21 21 F 1.35102 * 119.84288 * 180.23296 * 20 19 18 22 22 C 1.39509 * 119.06681 * 0.25099 * 6 5 4 23 23 F 1.35102 * 119.68569 * 179.97438 * 22 6 5 24 24 N 1.31983 * 120.62152 * 359.97438 * 22 6 5 25 25 H 1.09001 * 109.47182 * 299.99362 * 1 2 3 26 26 H 1.08995 * 109.47666 * 60.00040 * 1 2 3 27 27 H 1.09003 * 109.47244 * 180.02562 * 1 2 3 28 28 H 0.96993 * 119.99869 * 180.02562 * 2 1 3 29 29 H 1.08002 * 120.35922 * 0.04034 * 4 3 2 30 30 H 1.07993 * 120.79282 * 179.77534 * 5 4 3 31 31 H 1.07998 * 120.17019 * 359.95727 * 8 7 6 32 32 H 0.97002 * 119.99716 * 180.02562 * 13 12 10 33 33 H 1.07994 * 119.98588 * 180.02562 * 18 9 8 34 34 H 1.08003 * 119.82203 * 180.02562 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1595 1.2031 0.0000 4 6 1.4544 2.4030 0.0050 5 6 2.1506 3.5959 -0.0008 6 6 3.5486 3.5509 -0.0009 7 6 4.3415 4.8044 -0.0018 8 6 4.2834 5.6629 1.0859 9 6 5.0383 6.8484 1.0773 10 6 4.9866 7.7311 2.1799 11 1 5.2160 8.7778 2.0448 12 6 4.6385 7.2490 3.4460 13 7 4.7021 5.9663 3.6981 14 14 4.0827 8.4360 4.7770 15 1 2.6085 8.6018 4.7083 16 1 4.4586 7.8974 6.1089 17 1 4.7390 9.7521 4.5721 18 6 5.8457 7.1532 -0.0360 19 6 5.8936 6.2924 -1.1081 20 6 5.1528 5.1193 -1.0988 21 9 5.2112 4.2790 -2.1551 22 6 4.1868 2.3103 -0.0005 23 9 5.5365 2.2522 -0.0010 24 7 3.4843 1.1930 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.9500 -0.8400 -0.0004 29 1 0.3744 2.4014 0.0095 30 1 1.6281 4.5410 -0.0008 31 1 3.6612 5.4218 1.9351 32 1 4.4603 5.6321 4.5760 33 1 6.4280 8.0627 -0.0475 34 1 6.5141 6.5292 -1.9597 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239428660.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:59 Heat of formation + Delta-G solvation = -31.258402 kcal Electronic energy + Delta-G solvation = -22284.333247 eV Core-core repulsion = 18624.786778 eV Total energy + Delta-G solvation = -3659.546469 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.39350 -47.44428 -39.84402 -37.45795 -35.61520 -33.72900 -32.62264 -30.70876 -29.41323 -28.21803 -26.05898 -25.09230 -23.23560 -22.46677 -21.15109 -20.27450 -18.02492 -17.40634 -17.39902 -16.20279 -15.70953 -15.56744 -15.28475 -15.03235 -14.78805 -14.44201 -14.34443 -14.13718 -13.37581 -13.19635 -12.83109 -12.70833 -12.62624 -12.39365 -12.05655 -12.01123 -11.79801 -11.29880 -11.16696 -10.93248 -10.41854 -10.18621 -9.88810 -9.69686 -9.38008 -9.35399 -9.18120 -7.88061 -7.44361 -7.21762 -6.87853 -4.45839 1.41354 1.59610 2.54586 2.73477 3.02017 3.03224 3.05353 3.07683 3.84866 4.03130 4.27641 4.41968 4.93884 5.03637 5.15253 5.26957 5.31965 5.43912 5.50072 5.55401 5.77366 6.04214 6.09548 6.21635 6.44499 6.63658 6.77389 6.85635 6.99313 7.07402 7.12404 7.31239 7.50709 7.60913 7.71759 7.88108 8.07459 8.15721 8.42924 8.72635 8.76244 10.06345 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.015609 B = 0.005468 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.421899 B = 5119.704746 C = 6294.409866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.733 5.733 3 C 0.420 3.580 4 C -0.249 4.249 5 C 0.001 3.999 6 C -0.138 4.138 7 C -0.063 4.063 8 C -0.119 4.119 9 C 0.101 3.899 10 C -0.456 4.456 11 H 0.082 0.918 12 C 0.075 3.925 13 N -0.788 5.788 14 Si 0.910 3.090 15 H -0.267 1.267 16 H -0.277 1.277 17 H -0.261 1.261 18 C -0.199 4.199 19 C -0.118 4.118 20 C -0.025 4.025 21 F -0.169 7.169 22 C 0.366 3.634 23 F -0.104 7.104 24 N -0.578 5.578 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.404 0.596 29 H 0.135 0.865 30 H 0.144 0.856 31 H 0.130 0.870 32 H 0.283 0.717 33 H 0.103 0.897 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.964 -6.689 -3.022 11.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.367 5.367 3 C 0.185 3.815 4 C -0.274 4.274 5 C -0.025 4.025 6 C -0.144 4.144 7 C -0.065 4.065 8 C -0.139 4.139 9 C 0.098 3.902 10 C -0.485 4.485 11 H 0.100 0.900 12 C -0.144 4.144 13 N -0.413 5.413 14 Si 0.734 3.266 15 H -0.192 1.192 16 H -0.203 1.203 17 H -0.185 1.185 18 C -0.219 4.219 19 C -0.137 4.137 20 C -0.045 4.045 21 F -0.148 7.148 22 C 0.213 3.787 23 F -0.082 7.082 24 N -0.301 5.301 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.239 0.761 29 H 0.153 0.847 30 H 0.162 0.838 31 H 0.147 0.853 32 H 0.094 0.906 33 H 0.122 0.878 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.709 -7.642 -2.853 11.933 hybrid contribution -0.065 0.601 0.533 0.806 sum -8.774 -7.041 -2.320 11.487 Atomic orbital electron populations 1.21566 0.78916 1.02594 1.01499 1.44145 1.05597 1.05093 1.81864 1.17744 0.86178 0.86638 0.90916 1.21245 1.00766 0.91278 1.14109 1.21327 0.91943 0.98302 0.90917 1.19278 0.94003 0.92533 1.08538 1.18133 0.99178 0.93882 0.95274 1.21307 1.01304 0.95250 0.96020 1.17567 0.88785 0.91858 0.91976 1.19569 1.40674 0.96428 0.91872 0.89964 1.25942 0.92764 0.95599 1.00060 1.69829 1.33640 1.14379 1.23471 0.86274 0.79954 0.81161 0.79186 1.19166 1.20253 1.18489 1.20900 1.04007 1.00933 0.96019 1.20448 1.00030 0.94088 0.99105 1.17260 1.08217 0.92485 0.86549 1.91293 1.96249 1.71313 1.55929 1.17673 0.78221 0.88137 0.94718 1.91624 1.27118 1.96810 1.92687 1.66088 1.07547 1.31581 1.24891 0.92563 0.92607 0.90513 0.76115 0.84690 0.83845 0.85280 0.90565 0.87839 0.87861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.76 9.91 59.85 0.59 1.35 16 2 N -0.73 -8.58 5.88 -67.20 -0.40 -8.97 16 3 C 0.42 6.72 7.64 -155.02 -1.18 5.53 16 4 C -0.25 -3.72 9.31 -39.27 -0.37 -4.09 16 5 C 0.00 0.01 9.87 -39.01 -0.39 -0.38 16 6 C -0.14 -2.92 5.01 -104.66 -0.52 -3.45 16 7 C -0.06 -1.49 5.03 -104.91 -0.53 -2.02 16 8 C -0.12 -2.98 8.37 -38.55 -0.32 -3.30 16 9 C 0.10 2.56 5.57 -106.86 -0.60 1.96 16 10 C -0.46 -11.42 9.04 -37.79 -0.34 -11.77 16 11 H 0.08 1.96 7.91 -52.48 -0.41 1.55 16 12 C 0.07 1.79 5.13 -17.35 -0.09 1.70 16 13 N -0.79 -19.68 10.96 55.54 0.61 -19.07 16 14 Si 0.91 17.78 29.60 -169.99 -5.03 12.75 16 15 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 16 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 17 H -0.26 -5.04 7.11 56.52 0.40 -4.63 16 18 C -0.20 -4.68 9.78 -38.83 -0.38 -5.06 16 19 C -0.12 -2.68 9.99 -39.64 -0.40 -3.07 16 20 C -0.03 -0.60 7.09 -38.72 -0.27 -0.87 16 21 F -0.17 -3.96 16.65 2.25 0.04 -3.93 16 22 C 0.37 7.89 8.19 -17.01 -0.14 7.75 16 23 F -0.10 -2.38 16.68 2.25 0.04 -2.35 16 24 N -0.58 -11.17 10.39 -12.51 -0.13 -11.30 16 25 H 0.06 0.42 7.91 -51.93 -0.41 0.01 16 26 H 0.06 0.40 7.93 -51.93 -0.41 -0.01 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.40 4.31 8.95 -40.82 -0.37 3.95 16 29 H 0.14 1.53 6.67 -52.49 -0.35 1.18 16 30 H 0.14 2.23 8.06 -52.49 -0.42 1.80 16 31 H 0.13 3.30 6.16 -52.49 -0.32 2.98 16 32 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 33 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 34 H 0.10 2.07 8.06 -52.48 -0.42 1.65 16 LS Contribution 307.56 15.07 4.63 4.63 Total: -1.00 -28.99 307.56 -8.27 -37.27 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -3.10 Total: 6.68 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -4.93 Total: -15.71 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.08 Total: -39.35 kcal Atomic # 9 Polarization: -6.35 SS G_CDS: 0.08 Total: -6.27 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.99 -8.27 -37.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239428660.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.008 kcal (2) G-P(sol) polarization free energy of solvation -28.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds