Wall clock time and date at job start Tue Mar 31 2020 08:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.38918 * 119.99585 * 2 1 4 4 C 1.39173 * 119.56108 * 0.23637 * 3 2 1 5 5 C 1.38130 * 119.28635 * 180.27487 * 4 3 2 6 6 C 1.39871 * 118.42311 * 359.50193 * 5 4 3 7 7 C 1.48325 * 120.46681 * 180.23297 * 6 5 4 8 8 C 1.38689 * 120.01850 * 64.99531 * 7 6 5 9 9 C 1.40543 * 119.65740 * 179.97438 * 8 7 6 10 10 C 1.41334 * 120.15483 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99506 * 204.54373 * 10 9 8 12 12 C 1.39884 * 120.00195 * 24.55059 * 10 9 8 13 13 N 1.30870 * 120.00069 * 17.91699 * 12 10 9 14 14 Si 1.86801 * 119.99904 * 197.92457 * 12 10 9 15 15 H 1.48503 * 109.47014 * 89.99881 * 14 12 10 16 16 H 1.48501 * 109.46931 * 209.99276 * 14 12 10 17 17 H 1.48494 * 109.47293 * 329.99396 * 14 12 10 18 18 C 1.40858 * 119.68843 * 0.02562 * 9 8 7 19 19 C 1.37578 * 120.02583 * 359.97438 * 18 9 8 20 20 C 1.38739 * 120.35062 * 359.78502 * 19 18 9 21 21 F 1.35102 * 119.84288 * 180.23296 * 20 19 18 22 22 C 1.39509 * 119.06681 * 0.25099 * 6 5 4 23 23 F 1.35102 * 119.68569 * 179.97438 * 22 6 5 24 24 N 1.31983 * 120.62152 * 359.97438 * 22 6 5 25 25 H 1.09001 * 109.47182 * 299.99362 * 1 2 3 26 26 H 1.08995 * 109.47666 * 60.00040 * 1 2 3 27 27 H 1.09003 * 109.47244 * 180.02562 * 1 2 3 28 28 H 0.96993 * 119.99869 * 180.02562 * 2 1 3 29 29 H 1.08002 * 120.35922 * 0.04034 * 4 3 2 30 30 H 1.07993 * 120.79282 * 179.77534 * 5 4 3 31 31 H 1.07998 * 120.17019 * 359.95727 * 8 7 6 32 32 H 0.97002 * 119.99716 * 180.02562 * 13 12 10 33 33 H 1.07994 * 119.98588 * 180.02562 * 18 9 8 34 34 H 1.08003 * 119.82203 * 180.02562 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1595 1.2031 0.0000 4 6 1.4544 2.4030 0.0050 5 6 2.1506 3.5959 -0.0008 6 6 3.5486 3.5509 -0.0009 7 6 4.3415 4.8044 -0.0018 8 6 4.2834 5.6629 1.0859 9 6 5.0383 6.8484 1.0773 10 6 4.9866 7.7311 2.1799 11 1 5.2160 8.7778 2.0448 12 6 4.6385 7.2490 3.4460 13 7 4.7021 5.9663 3.6981 14 14 4.0827 8.4360 4.7770 15 1 2.6085 8.6018 4.7083 16 1 4.4586 7.8974 6.1089 17 1 4.7390 9.7521 4.5721 18 6 5.8457 7.1532 -0.0360 19 6 5.8936 6.2924 -1.1081 20 6 5.1528 5.1193 -1.0988 21 9 5.2112 4.2790 -2.1551 22 6 4.1868 2.3103 -0.0005 23 9 5.5365 2.2522 -0.0010 24 7 3.4843 1.1930 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.9500 -0.8400 -0.0004 29 1 0.3744 2.4014 0.0095 30 1 1.6281 4.5410 -0.0008 31 1 3.6612 5.4218 1.9351 32 1 4.4603 5.6321 4.5760 33 1 6.4280 8.0627 -0.0475 34 1 6.5141 6.5292 -1.9597 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239428660.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:57 Heat of formation + Delta-G solvation = -47.229099 kcal Electronic energy + Delta-G solvation = -22285.025788 eV Core-core repulsion = 18624.786778 eV Total energy + Delta-G solvation = -3660.239011 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -50.05191 -49.29219 -41.19006 -39.22676 -36.75833 -35.50587 -34.09304 -32.19242 -31.26684 -29.60141 -27.17822 -26.85868 -24.62731 -23.88859 -22.95184 -21.95605 -19.47021 -18.97628 -18.83841 -18.03626 -17.36561 -17.08120 -16.81664 -16.63397 -16.18659 -15.95912 -15.85590 -15.33283 -15.01310 -14.59179 -14.52863 -14.18084 -13.91421 -13.81652 -13.68617 -13.45222 -13.09647 -12.91469 -12.79255 -12.54899 -12.21898 -11.78797 -11.51974 -11.22231 -11.00274 -10.79045 -10.66096 -9.53920 -9.28884 -8.68626 -8.60557 -6.36374 -0.02902 0.20258 0.77064 0.91263 1.42300 1.50323 1.55870 1.93061 2.21605 2.57590 2.67018 2.95521 3.54056 3.66530 3.77034 3.92944 4.02147 4.18302 4.33314 4.48163 4.70047 4.71526 4.79911 4.89041 4.97504 5.00349 5.09190 5.18447 5.28049 5.38864 5.53325 5.75874 5.85540 5.95935 6.01190 6.22959 6.37995 6.56435 6.86188 6.89426 6.93199 8.28764 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.015609 B = 0.005468 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.421899 B = 5119.704746 C = 6294.409866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.720 5.720 3 C 0.418 3.582 4 C -0.228 4.228 5 C -0.001 4.001 6 C -0.173 4.173 7 C -0.057 4.057 8 C -0.139 4.139 9 C 0.076 3.924 10 C -0.484 4.484 11 H 0.087 0.913 12 C 0.037 3.963 13 N -0.821 5.821 14 Si 0.984 3.016 15 H -0.259 1.259 16 H -0.272 1.272 17 H -0.255 1.255 18 C -0.210 4.210 19 C -0.115 4.115 20 C -0.046 4.046 21 F -0.170 7.170 22 C 0.338 3.662 23 F -0.126 7.126 24 N -0.597 5.597 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.107 0.893 28 H 0.410 0.590 29 H 0.181 0.819 30 H 0.160 0.840 31 H 0.117 0.883 32 H 0.290 0.710 33 H 0.120 0.880 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.409 -7.034 -2.677 13.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.353 5.353 3 C 0.180 3.820 4 C -0.253 4.253 5 C -0.026 4.026 6 C -0.179 4.179 7 C -0.059 4.059 8 C -0.159 4.159 9 C 0.074 3.926 10 C -0.513 4.513 11 H 0.105 0.895 12 C -0.179 4.179 13 N -0.447 5.447 14 Si 0.805 3.195 15 H -0.183 1.183 16 H -0.197 1.197 17 H -0.179 1.179 18 C -0.229 4.229 19 C -0.134 4.134 20 C -0.066 4.066 21 F -0.149 7.149 22 C 0.186 3.814 23 F -0.105 7.105 24 N -0.322 5.322 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.126 0.874 28 H 0.245 0.755 29 H 0.198 0.802 30 H 0.177 0.823 31 H 0.135 0.865 32 H 0.101 0.899 33 H 0.138 0.862 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.181 -8.026 -2.528 13.993 hybrid contribution 0.571 0.524 0.370 0.859 sum -10.610 -7.502 -2.157 13.172 Atomic orbital electron populations 1.21949 0.75986 1.05146 1.02395 1.44461 1.07296 1.03835 1.79662 1.18253 0.85440 0.88715 0.89558 1.21646 1.02709 0.89718 1.11199 1.21574 0.90529 1.00186 0.90359 1.19320 0.95541 0.91322 1.11732 1.18337 0.98660 0.94431 0.94454 1.21212 1.02263 0.96118 0.96258 1.17954 0.89315 0.92401 0.92957 1.19863 1.42026 0.96689 0.92695 0.89502 1.26805 0.91937 0.97146 1.01978 1.69901 1.34066 1.16261 1.24437 0.85161 0.79636 0.78743 0.75988 1.18327 1.19717 1.17892 1.21106 1.04167 1.01780 0.95849 1.20729 0.99646 0.93379 0.99664 1.17540 1.09088 0.93060 0.86920 1.91276 1.96316 1.71437 1.55861 1.17826 0.77725 0.89089 0.96773 1.91549 1.28775 1.96980 1.93183 1.66117 1.09194 1.30683 1.26166 0.91654 0.91456 0.87420 0.75508 0.80220 0.82286 0.86524 0.89935 0.86234 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.94 9.91 127.77 1.27 2.21 16 2 N -0.72 -14.58 5.88 -366.52 -2.16 -16.73 16 3 C 0.42 12.54 7.64 133.08 1.02 13.55 16 4 C -0.23 -6.20 9.31 22.47 0.21 -6.00 16 5 C 0.00 -0.05 9.87 22.64 0.22 0.18 16 6 C -0.17 -7.50 5.01 -19.89 -0.10 -7.60 16 7 C -0.06 -2.80 5.03 -20.05 -0.10 -2.90 16 8 C -0.14 -7.20 8.37 22.94 0.19 -7.01 16 9 C 0.08 3.99 5.57 -21.31 -0.12 3.87 16 10 C -0.48 -24.66 9.04 23.43 0.21 -24.45 16 11 H 0.09 4.19 7.91 -2.91 -0.02 4.16 16 12 C 0.04 1.78 5.13 85.23 0.44 2.22 16 13 N -0.82 -41.86 10.96 21.82 0.24 -41.62 16 14 Si 0.98 36.11 29.60 68.60 2.03 38.14 16 15 H -0.26 -9.11 7.11 99.48 0.71 -8.41 16 16 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 17 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 18 C -0.21 -10.03 9.78 22.76 0.22 -9.80 16 19 C -0.12 -5.30 9.99 22.23 0.22 -5.08 16 20 C -0.05 -2.26 7.09 22.83 0.16 -2.10 16 21 F -0.17 -8.15 16.65 44.97 0.75 -7.40 16 22 C 0.34 15.05 8.19 84.98 0.70 15.74 16 23 F -0.13 -6.10 16.68 44.97 0.75 -5.35 16 24 N -0.60 -23.08 10.39 -193.48 -2.01 -25.09 16 25 H 0.06 0.65 7.91 -2.39 -0.02 0.63 16 26 H 0.07 0.64 7.93 -2.39 -0.02 0.62 16 27 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.41 7.64 8.95 -92.71 -0.83 6.81 16 29 H 0.18 3.19 6.67 -2.91 -0.02 3.17 16 30 H 0.16 4.78 8.06 -2.91 -0.02 4.75 16 31 H 0.12 6.23 6.16 -2.91 -0.02 6.22 16 32 H 0.29 13.42 8.30 -92.71 -0.77 12.65 16 33 H 0.12 5.18 8.06 -2.91 -0.02 5.16 16 34 H 0.13 5.12 8.06 -2.91 -0.02 5.10 16 Total: -1.00 -65.63 307.56 4.48 -61.15 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 0.33 Total: 24.06 kcal Atomic # 6 Polarization: -31.70 SS G_CDS: 4.54 Total: -27.16 kcal Atomic # 7 Polarization: -79.52 SS G_CDS: -3.93 Total: -83.45 kcal Atomic # 9 Polarization: -14.25 SS G_CDS: 1.50 Total: -12.75 kcal Atomic # 14 Polarization: 36.11 SS G_CDS: 2.03 Total: 38.14 kcal Total: -65.63 4.48 -61.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239428660.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.922 kcal (2) G-P(sol) polarization free energy of solvation -65.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds