Wall clock time and date at job start Tue Mar 31 2020 08:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.38716 * 120.00477 * 2 1 4 4 C 1.39353 * 119.51456 * 0.02562 * 3 2 1 5 5 C 1.37951 * 119.31938 * 179.71999 * 4 3 2 6 6 C 1.40261 * 118.40313 * 0.51932 * 5 4 3 7 7 C 1.47660 * 120.49734 * 179.75494 * 6 5 4 8 8 C 1.39272 * 120.26746 * 64.72487 * 7 6 5 9 9 C 1.37915 * 120.12813 * 179.70125 * 8 7 6 10 10 C 1.39239 * 120.66875 * 0.27411 * 9 8 7 11 11 F 1.35100 * 119.73885 * 179.97438 * 10 9 8 12 12 C 1.37584 * 120.52388 * 0.02562 * 10 9 8 13 13 C 1.40732 * 119.85420 * 359.97348 * 12 10 9 14 14 C 1.40818 * 120.32506 * 180.02562 * 13 12 10 15 15 H 1.08001 * 119.99698 * 205.29909 * 14 13 12 16 16 C 1.40007 * 119.99955 * 25.29167 * 14 13 12 17 17 N 1.30811 * 120.00006 * 15.50069 * 16 14 13 18 18 Si 1.86799 * 119.99859 * 195.49755 * 16 14 13 19 19 H 1.48497 * 109.47358 * 60.00306 * 18 16 14 20 20 H 1.48506 * 109.46918 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47294 * 299.99977 * 18 16 14 22 22 C 1.39951 * 118.99851 * 359.48103 * 6 5 4 23 23 F 1.35104 * 119.71092 * 180.27453 * 22 6 5 24 24 N 1.31890 * 120.56820 * 0.25365 * 22 6 5 25 25 H 1.08996 * 109.46575 * 60.00040 * 1 2 3 26 26 H 1.08992 * 109.47309 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47011 * 300.00129 * 1 2 3 28 28 H 0.97008 * 119.99763 * 179.97438 * 2 1 3 29 29 H 1.07998 * 120.34667 * 359.97438 * 4 3 2 30 30 H 1.08001 * 120.79989 * 180.29333 * 5 4 3 31 31 H 1.08003 * 119.93436 * 359.97383 * 8 7 6 32 32 H 1.08009 * 119.66814 * 180.29467 * 9 8 7 33 33 H 1.08002 * 120.06867 * 179.97438 * 12 10 9 34 34 H 0.96996 * 120.00539 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1587 1.2013 0.0000 4 6 1.4519 2.4022 0.0005 5 6 2.1458 3.5945 0.0064 6 6 3.5477 3.5505 0.0005 7 6 4.3366 4.7987 0.0009 8 6 4.2820 5.6633 1.0915 9 6 5.0247 6.8253 1.0915 10 6 5.8314 7.1526 0.0048 11 9 6.5508 8.2960 0.0245 12 6 5.9010 6.3213 -1.0893 13 6 5.1524 5.1299 -1.1126 14 6 5.2166 4.2716 -2.2271 15 1 4.3919 3.6099 -2.4473 16 6 6.3494 4.2761 -3.0498 17 7 7.4572 4.8341 -2.6344 18 14 6.2789 3.4852 -4.7407 19 1 5.2386 4.1584 -5.5590 20 1 7.5990 3.6226 -5.4068 21 1 5.9433 2.0455 -4.6002 22 6 4.1875 2.3058 0.0000 23 9 5.5372 2.2467 -0.0001 24 7 3.4841 1.1901 0.0000 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.9501 -0.8401 0.0004 29 1 0.3719 2.3997 0.0005 30 1 1.6222 4.5390 0.0117 31 1 3.6601 5.4210 1.9407 32 1 4.9805 7.4881 1.9432 33 1 6.5289 6.5826 -1.9283 34 1 8.2422 4.8369 -3.2042 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239430107.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:20 Heat of formation + Delta-G solvation = -31.295450 kcal Electronic energy + Delta-G solvation = -22452.870601 eV Core-core repulsion = 18793.322525 eV Total energy + Delta-G solvation = -3659.548076 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 5.70 seconds Orbital eigenvalues (eV) -48.00670 -47.65989 -39.65470 -37.47705 -35.37346 -33.81242 -32.35064 -30.43202 -29.70069 -27.89210 -26.15126 -25.17510 -23.00421 -22.17095 -21.26012 -20.09622 -17.78961 -17.61448 -17.13732 -16.00889 -15.63498 -15.27656 -15.14704 -14.89348 -14.71297 -14.52309 -14.31425 -14.19101 -13.16918 -12.99346 -12.83208 -12.58652 -12.45702 -12.34958 -12.22784 -12.05138 -11.63932 -11.23398 -11.17785 -10.72077 -10.46087 -10.17867 -9.94878 -9.52133 -9.30447 -9.17589 -9.16245 -7.64040 -7.54950 -7.09099 -6.82936 -4.55011 1.63451 1.79056 2.59809 2.75678 3.00935 3.03972 3.13056 3.20262 3.83904 4.22955 4.43460 4.53460 5.02982 5.20634 5.28947 5.34332 5.44950 5.54364 5.61612 5.64680 5.81160 6.18422 6.30690 6.37709 6.39346 6.69685 6.86484 6.91530 6.97645 7.13440 7.27840 7.42761 7.57724 7.66926 7.72249 7.83635 8.10233 8.36201 8.42419 8.68310 8.73610 10.01294 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.013984 B = 0.006597 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.873481 B = 4243.207723 C = 5666.720577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.736 5.736 3 C 0.411 3.589 4 C -0.253 4.253 5 C -0.017 4.017 6 C -0.103 4.103 7 C -0.188 4.188 8 C -0.042 4.042 9 C -0.280 4.280 10 C 0.108 3.892 11 F -0.167 7.167 12 C -0.196 4.196 13 C 0.151 3.849 14 C -0.438 4.438 15 H 0.079 0.921 16 C 0.078 3.922 17 N -0.776 5.776 18 Si 0.908 3.092 19 H -0.261 1.261 20 H -0.275 1.275 21 H -0.263 1.263 22 C 0.366 3.634 23 F -0.097 7.097 24 N -0.581 5.581 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.403 0.597 29 H 0.129 0.871 30 H 0.137 0.863 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.133 0.867 34 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.711 -5.848 2.244 12.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.370 5.370 3 C 0.177 3.823 4 C -0.277 4.277 5 C -0.043 4.043 6 C -0.109 4.109 7 C -0.190 4.190 8 C -0.061 4.061 9 C -0.300 4.300 10 C 0.089 3.911 11 F -0.146 7.146 12 C -0.216 4.216 13 C 0.147 3.853 14 C -0.465 4.465 15 H 0.098 0.902 16 C -0.143 4.143 17 N -0.400 5.400 18 Si 0.732 3.268 19 H -0.185 1.185 20 H -0.200 1.200 21 H -0.187 1.187 22 C 0.213 3.787 23 F -0.075 7.075 24 N -0.305 5.305 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.237 0.763 29 H 0.147 0.853 30 H 0.155 0.845 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.150 0.850 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.136 -6.511 2.170 12.241 hybrid contribution 0.305 0.162 -0.753 0.829 sum -9.831 -6.349 1.417 11.788 Atomic orbital electron populations 1.21518 0.79209 1.02337 1.01311 1.44065 1.05425 1.05205 1.82303 1.17719 0.86276 0.86472 0.91880 1.21179 1.00375 0.91475 1.14710 1.21388 0.92395 0.97779 0.92713 1.19138 0.93059 0.92591 1.06107 1.18220 1.08878 0.95270 0.96655 1.20329 0.96916 0.92838 0.95972 1.20141 1.08086 1.01986 0.99747 1.17770 0.93782 0.82761 0.96760 1.91335 1.76927 1.49293 1.97089 1.21265 1.06722 0.95172 0.98397 1.17229 0.87734 0.90002 0.90301 1.19431 1.01746 1.18223 1.07147 0.90248 1.25974 0.94515 0.93987 0.99782 1.69777 1.01061 1.32799 1.36336 0.86344 0.78676 0.80619 0.81208 1.18532 1.19964 1.18699 1.17921 0.78437 0.88041 0.94313 1.91655 1.26744 1.96729 1.92400 1.66072 1.07378 1.32181 1.24854 0.92753 0.90741 0.92799 0.76289 0.85271 0.84481 0.88287 0.88125 0.84980 0.90274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.82 9.91 59.85 0.59 1.41 16 2 N -0.74 -9.03 5.87 -67.19 -0.39 -9.43 16 3 C 0.41 6.74 7.64 -155.09 -1.19 5.56 16 4 C -0.25 -3.81 9.30 -39.27 -0.37 -4.17 16 5 C -0.02 -0.30 9.88 -38.93 -0.38 -0.68 16 6 C -0.10 -2.16 4.38 -104.65 -0.46 -2.62 16 7 C -0.19 -4.36 5.08 -104.24 -0.53 -4.89 16 8 C -0.04 -0.91 9.72 -39.32 -0.38 -1.29 16 9 C -0.28 -6.24 10.00 -39.33 -0.39 -6.63 16 10 C 0.11 2.64 7.28 -39.45 -0.29 2.36 16 11 F -0.17 -3.95 17.26 2.25 0.04 -3.91 16 12 C -0.20 -5.06 8.64 -38.88 -0.34 -5.39 16 13 C 0.15 3.86 5.48 -106.56 -0.58 3.27 16 14 C -0.44 -11.18 7.53 -37.94 -0.29 -11.47 16 15 H 0.08 2.02 7.10 -52.49 -0.37 1.64 16 16 C 0.08 1.92 5.18 -17.32 -0.09 1.83 16 17 N -0.78 -19.68 10.87 55.55 0.60 -19.08 16 18 Si 0.91 18.62 29.59 -169.99 -5.03 13.59 16 19 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 20 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 21 H -0.26 -5.46 7.11 56.52 0.40 -5.05 16 22 C 0.37 8.04 7.66 -16.89 -0.13 7.92 16 23 F -0.10 -2.35 16.21 2.25 0.04 -2.31 16 24 N -0.58 -11.58 10.38 -12.40 -0.13 -11.70 16 25 H 0.05 0.43 7.91 -51.93 -0.41 0.02 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.41 7.91 -51.93 -0.41 0.00 16 28 H 0.40 4.59 8.95 -40.82 -0.37 4.22 16 29 H 0.13 1.50 6.67 -52.49 -0.35 1.15 16 30 H 0.14 2.04 8.06 -52.49 -0.42 1.62 16 31 H 0.10 1.84 8.06 -52.48 -0.42 1.42 16 32 H 0.10 2.01 8.06 -52.48 -0.42 1.59 16 33 H 0.13 3.54 6.13 -52.49 -0.32 3.22 16 34 H 0.29 6.61 8.30 -40.82 -0.34 6.27 16 LS Contribution 304.45 15.07 4.59 4.59 Total: -1.00 -28.69 304.45 -8.16 -36.85 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -3.06 Total: 6.20 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -4.82 Total: -14.80 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.08 Total: -40.21 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 0.08 Total: -6.22 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.69 -8.16 -36.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239430107.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.554 kcal (2) G-P(sol) polarization free energy of solvation -28.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.70 seconds