Wall clock time and date at job start Tue Mar 31 2020 08:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.38716 * 120.00477 * 2 1 4 4 C 1.39353 * 119.51456 * 0.02562 * 3 2 1 5 5 C 1.37951 * 119.31938 * 179.71999 * 4 3 2 6 6 C 1.40261 * 118.40313 * 0.51932 * 5 4 3 7 7 C 1.47660 * 120.49734 * 179.75494 * 6 5 4 8 8 C 1.39272 * 120.26746 * 64.72487 * 7 6 5 9 9 C 1.37915 * 120.12813 * 179.70125 * 8 7 6 10 10 C 1.39239 * 120.66875 * 0.27411 * 9 8 7 11 11 F 1.35100 * 119.73885 * 179.97438 * 10 9 8 12 12 C 1.37584 * 120.52388 * 0.02562 * 10 9 8 13 13 C 1.40732 * 119.85420 * 359.97348 * 12 10 9 14 14 C 1.40818 * 120.32506 * 180.02562 * 13 12 10 15 15 H 1.08001 * 119.99698 * 205.29909 * 14 13 12 16 16 C 1.40007 * 119.99955 * 25.29167 * 14 13 12 17 17 N 1.30811 * 120.00006 * 15.50069 * 16 14 13 18 18 Si 1.86799 * 119.99859 * 195.49755 * 16 14 13 19 19 H 1.48497 * 109.47358 * 60.00306 * 18 16 14 20 20 H 1.48506 * 109.46918 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47294 * 299.99977 * 18 16 14 22 22 C 1.39951 * 118.99851 * 359.48103 * 6 5 4 23 23 F 1.35104 * 119.71092 * 180.27453 * 22 6 5 24 24 N 1.31890 * 120.56820 * 0.25365 * 22 6 5 25 25 H 1.08996 * 109.46575 * 60.00040 * 1 2 3 26 26 H 1.08992 * 109.47309 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47011 * 300.00129 * 1 2 3 28 28 H 0.97008 * 119.99763 * 179.97438 * 2 1 3 29 29 H 1.07998 * 120.34667 * 359.97438 * 4 3 2 30 30 H 1.08001 * 120.79989 * 180.29333 * 5 4 3 31 31 H 1.08003 * 119.93436 * 359.97383 * 8 7 6 32 32 H 1.08009 * 119.66814 * 180.29467 * 9 8 7 33 33 H 1.08002 * 120.06867 * 179.97438 * 12 10 9 34 34 H 0.96996 * 120.00539 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1587 1.2013 0.0000 4 6 1.4519 2.4022 0.0005 5 6 2.1458 3.5945 0.0064 6 6 3.5477 3.5505 0.0005 7 6 4.3366 4.7987 0.0009 8 6 4.2820 5.6633 1.0915 9 6 5.0247 6.8253 1.0915 10 6 5.8314 7.1526 0.0048 11 9 6.5508 8.2960 0.0245 12 6 5.9010 6.3213 -1.0893 13 6 5.1524 5.1299 -1.1126 14 6 5.2166 4.2716 -2.2271 15 1 4.3919 3.6099 -2.4473 16 6 6.3494 4.2761 -3.0498 17 7 7.4572 4.8341 -2.6344 18 14 6.2789 3.4852 -4.7407 19 1 5.2386 4.1584 -5.5590 20 1 7.5990 3.6226 -5.4068 21 1 5.9433 2.0455 -4.6002 22 6 4.1875 2.3058 0.0000 23 9 5.5372 2.2467 -0.0001 24 7 3.4841 1.1901 0.0000 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.9501 -0.8401 0.0004 29 1 0.3719 2.3997 0.0005 30 1 1.6222 4.5390 0.0117 31 1 3.6601 5.4210 1.9407 32 1 4.9805 7.4881 1.9432 33 1 6.5289 6.5826 -1.9283 34 1 8.2422 4.8369 -3.2042 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239430107.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:11 Heat of formation + Delta-G solvation = -47.389501 kcal Electronic energy + Delta-G solvation = -22453.568491 eV Core-core repulsion = 18793.322525 eV Total energy + Delta-G solvation = -3660.245966 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 4.53 seconds Orbital eigenvalues (eV) -49.70244 -49.54951 -41.01758 -39.20811 -36.51298 -35.62835 -33.79249 -32.00331 -31.44247 -29.31441 -27.58925 -26.62037 -24.39115 -23.61452 -23.06676 -21.76612 -19.50421 -18.97583 -18.58948 -17.84513 -17.17869 -16.92736 -16.65346 -16.55931 -16.30270 -16.20436 -15.74960 -15.19625 -14.87026 -14.52460 -14.32523 -14.19224 -13.99402 -13.84510 -13.53143 -13.42477 -13.06321 -12.85029 -12.81786 -12.39584 -12.17037 -11.94023 -11.61564 -11.12169 -10.93487 -10.61358 -10.47687 -9.49401 -9.21693 -8.75413 -8.39681 -6.44066 0.18727 0.39754 0.83109 0.95164 1.31687 1.42370 1.46471 2.10800 2.13585 2.59787 2.85019 3.18591 3.52273 3.80138 3.92741 4.05069 4.25041 4.34651 4.49507 4.57577 4.61137 4.76544 4.92570 4.99597 5.03464 5.05674 5.12017 5.26822 5.31496 5.60295 5.63128 5.76466 5.88410 5.98151 6.13277 6.25861 6.51236 6.56241 6.82151 6.87505 7.10125 8.22282 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.013984 B = 0.006597 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.873481 B = 4243.207723 C = 5666.720577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.726 5.726 3 C 0.408 3.592 4 C -0.233 4.233 5 C -0.010 4.010 6 C -0.133 4.133 7 C -0.182 4.182 8 C -0.042 4.042 9 C -0.273 4.273 10 C 0.093 3.907 11 F -0.167 7.167 12 C -0.223 4.223 13 C 0.124 3.876 14 C -0.459 4.459 15 H 0.072 0.928 16 C 0.038 3.962 17 N -0.812 5.812 18 Si 0.971 3.029 19 H -0.252 1.252 20 H -0.263 1.263 21 H -0.267 1.267 22 C 0.335 3.665 23 F -0.127 7.127 24 N -0.606 5.606 25 H 0.062 0.938 26 H 0.103 0.897 27 H 0.067 0.933 28 H 0.406 0.594 29 H 0.175 0.825 30 H 0.163 0.837 31 H 0.136 0.864 32 H 0.129 0.871 33 H 0.112 0.888 34 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.082 -6.938 2.796 15.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.359 5.359 3 C 0.171 3.829 4 C -0.257 4.257 5 C -0.035 4.035 6 C -0.139 4.139 7 C -0.184 4.184 8 C -0.060 4.060 9 C -0.293 4.293 10 C 0.074 3.926 11 F -0.146 7.146 12 C -0.244 4.244 13 C 0.121 3.879 14 C -0.487 4.487 15 H 0.090 0.910 16 C -0.179 4.179 17 N -0.437 5.437 18 Si 0.792 3.208 19 H -0.176 1.176 20 H -0.187 1.187 21 H -0.192 1.192 22 C 0.183 3.817 23 F -0.106 7.106 24 N -0.331 5.331 25 H 0.081 0.919 26 H 0.122 0.878 27 H 0.085 0.915 28 H 0.241 0.759 29 H 0.192 0.808 30 H 0.180 0.820 31 H 0.153 0.847 32 H 0.147 0.853 33 H 0.130 0.870 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.542 -7.617 2.733 15.775 hybrid contribution 1.135 0.381 -0.784 1.431 sum -12.407 -7.236 1.949 14.494 Atomic orbital electron populations 1.21886 0.76250 1.04810 1.02247 1.44390 1.07164 1.04010 1.80325 1.18252 0.85489 0.88615 0.90523 1.21593 1.02352 0.89964 1.11820 1.21669 0.90699 0.99795 0.91327 1.19127 0.94618 0.91069 1.09071 1.18558 1.07705 0.96181 0.95999 1.20719 0.96813 0.92044 0.96452 1.20494 1.06728 1.02520 0.99554 1.17988 0.94509 0.82809 0.97283 1.91322 1.77053 1.49138 1.97120 1.21198 1.07975 0.96389 0.98806 1.17552 0.88733 0.90043 0.91529 1.19486 1.02123 1.18823 1.08318 0.90988 1.26754 0.93865 0.94332 1.02973 1.69839 1.01727 1.34428 1.37706 0.85407 0.79280 0.79173 0.76973 1.17612 1.18730 1.19163 1.18103 0.77642 0.89232 0.96682 1.91566 1.29024 1.96944 1.93037 1.66061 1.09157 1.31592 1.26262 0.91904 0.87822 0.91466 0.75890 0.80804 0.81991 0.84666 0.85315 0.87047 0.89809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.02 9.91 127.77 1.27 2.29 16 2 N -0.73 -15.28 5.87 -366.49 -2.15 -17.43 16 3 C 0.41 12.32 7.64 133.17 1.02 13.34 16 4 C -0.23 -6.09 9.30 22.47 0.21 -5.88 16 5 C -0.01 -0.31 9.88 22.69 0.22 -0.08 16 6 C -0.13 -5.50 4.38 -19.88 -0.09 -5.58 16 7 C -0.18 -8.50 5.08 -19.62 -0.10 -8.60 16 8 C -0.04 -1.76 9.72 22.44 0.22 -1.54 16 9 C -0.27 -11.89 10.00 22.43 0.22 -11.66 16 10 C 0.09 4.62 7.28 22.36 0.16 4.79 16 11 F -0.17 -8.02 17.26 44.97 0.78 -7.24 16 12 C -0.22 -12.09 8.64 22.73 0.20 -11.89 16 13 C 0.12 6.61 5.48 -21.12 -0.12 6.50 16 14 C -0.46 -24.49 7.53 23.33 0.18 -24.31 16 15 H 0.07 3.81 7.10 -2.91 -0.02 3.79 16 16 C 0.04 1.92 5.18 85.27 0.44 2.37 16 17 N -0.81 -43.34 10.87 21.84 0.24 -43.10 16 18 Si 0.97 39.26 29.59 68.60 2.03 41.29 16 19 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 20 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 21 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 22 C 0.34 15.00 7.66 85.10 0.65 15.65 16 23 F -0.13 -6.49 16.21 44.97 0.73 -5.77 16 24 N -0.61 -23.87 10.38 -193.16 -2.01 -25.88 16 25 H 0.06 0.66 7.91 -2.39 -0.02 0.64 16 26 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.07 0.64 7.91 -2.39 -0.02 0.62 16 28 H 0.41 8.13 8.95 -92.70 -0.83 7.30 16 29 H 0.17 2.97 6.67 -2.91 -0.02 2.95 16 30 H 0.16 4.20 8.06 -2.91 -0.02 4.18 16 31 H 0.14 4.61 8.06 -2.91 -0.02 4.59 16 32 H 0.13 4.82 8.06 -2.91 -0.02 4.79 16 33 H 0.11 6.37 6.13 -2.91 -0.02 6.35 16 34 H 0.29 14.12 8.30 -92.71 -0.77 13.35 16 Total: -1.00 -66.50 304.45 4.44 -62.06 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.34 Total: 20.69 kcal Atomic # 6 Polarization: -29.11 SS G_CDS: 4.49 Total: -24.62 kcal Atomic # 7 Polarization: -82.49 SS G_CDS: -3.92 Total: -86.41 kcal Atomic # 9 Polarization: -14.51 SS G_CDS: 1.50 Total: -13.01 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.29 kcal Total: -66.50 4.44 -62.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239430107.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.674 kcal (2) G-P(sol) polarization free energy of solvation -66.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.53 seconds