Wall clock time and date at job start Tue Mar 31 2020 08:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.38901 * 120.00018 * 2 1 4 4 C 1.39179 * 119.55690 * 359.97438 * 3 2 1 5 5 C 1.38135 * 119.28023 * 179.97438 * 4 3 2 6 6 C 1.39860 * 118.42666 * 0.02562 * 5 4 3 7 7 C 1.48345 * 120.46263 * 179.97438 * 6 5 4 8 8 C 1.39725 * 119.99247 * 310.00589 * 7 6 5 9 9 C 1.38619 * 120.34997 * 180.02562 * 8 7 6 10 10 F 1.35095 * 119.83376 * 179.97438 * 9 8 7 11 11 C 1.37949 * 120.32974 * 0.02562 * 9 8 7 12 12 C 1.40725 * 119.96892 * 0.02562 * 11 9 8 13 13 C 1.41432 * 120.17110 * 180.02562 * 12 11 9 14 14 H 1.07994 * 119.99875 * 204.46569 * 13 12 11 15 15 C 1.39924 * 119.99754 * 24.46618 * 13 12 11 16 16 N 1.30837 * 120.00186 * 17.85508 * 15 13 12 17 17 Si 1.86797 * 119.99912 * 197.86127 * 15 13 12 18 18 H 1.48496 * 109.47254 * 59.99796 * 17 15 13 19 19 H 1.48499 * 109.47079 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46920 * 300.00053 * 17 15 13 21 21 C 1.38775 * 119.98832 * 130.02141 * 7 6 5 22 22 C 1.39497 * 119.07105 * 0.27525 * 6 5 4 23 23 F 1.35101 * 119.68642 * 179.70456 * 22 6 5 24 24 N 1.31992 * 120.62171 * 359.42800 * 22 6 5 25 25 H 1.08995 * 109.46916 * 60.00057 * 1 2 3 26 26 H 1.09003 * 109.46792 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46838 * 300.00082 * 1 2 3 28 28 H 0.97001 * 120.00342 * 180.02562 * 2 1 3 29 29 H 1.08000 * 120.36308 * 0.02562 * 4 3 2 30 30 H 1.07993 * 120.78334 * 179.97438 * 5 4 3 31 31 H 1.08003 * 119.82679 * 0.02562 * 8 7 6 32 32 H 1.07994 * 120.01802 * 179.72649 * 11 9 8 33 33 H 0.96992 * 120.00026 * 179.97438 * 16 15 13 34 34 H 1.08004 * 120.16182 * 0.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1595 1.2029 0.0000 4 6 1.4543 2.4028 -0.0005 5 6 2.1507 3.5958 0.0000 6 6 3.5486 3.5506 0.0005 7 6 4.3416 4.8043 0.0006 8 6 4.0578 5.8103 -0.9267 9 6 4.7944 6.9845 -0.9337 10 9 4.5114 7.9501 -1.8352 11 6 5.8156 7.1716 -0.0253 12 6 6.1138 6.1670 0.9139 13 6 7.1596 6.3546 1.8475 14 1 7.6523 5.4992 2.2854 15 6 7.5557 7.6484 2.2037 16 7 6.7650 8.6634 1.9660 17 14 9.2133 7.9267 3.0186 18 1 10.2941 7.4566 2.1152 19 1 9.3927 9.3748 3.2940 20 1 9.2708 7.1697 4.2948 21 6 5.3653 4.9776 0.9214 22 6 4.1867 2.3101 -0.0054 23 9 5.5365 2.2521 -0.0110 24 7 3.4842 1.1927 0.0000 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.9500 -0.8400 -0.0004 29 1 0.3743 2.4013 -0.0005 30 1 1.6282 4.5408 -0.0008 31 1 3.2603 5.6723 -1.6419 32 1 6.3892 8.0866 -0.0381 33 1 7.0394 9.5602 2.2133 34 1 5.5870 4.2012 1.6387 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239436730.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:03 Heat of formation + Delta-G solvation = -33.504603 kcal Electronic energy + Delta-G solvation = -21783.184074 eV Core-core repulsion = 18123.540202 eV Total energy + Delta-G solvation = -3659.643872 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -48.51921 -47.66629 -39.99544 -37.50133 -35.70543 -33.93882 -32.46497 -30.56965 -29.65415 -28.08283 -26.09062 -25.51336 -23.32351 -22.60910 -20.77764 -20.57579 -18.08733 -17.58709 -17.48443 -15.98892 -15.74807 -15.61291 -15.08816 -14.92764 -14.80330 -14.54134 -14.41829 -14.33584 -14.09658 -13.29391 -12.95497 -12.84424 -12.76284 -12.50086 -12.13032 -12.02741 -11.62300 -11.18251 -11.05937 -10.88102 -10.56388 -10.14117 -9.96286 -9.77933 -9.49978 -9.47354 -9.22615 -7.94625 -7.52071 -7.12470 -6.85655 -4.51965 1.24699 1.43436 2.62909 2.72749 2.92796 3.03348 3.05249 3.12886 3.86298 3.91840 4.15298 4.44555 4.84592 4.92375 5.01184 5.18405 5.20555 5.33676 5.41227 5.49351 5.77333 5.96329 6.10224 6.26071 6.33816 6.56242 6.62806 6.84556 6.92750 6.98569 7.11918 7.36467 7.43907 7.61291 7.68263 7.84536 8.02612 8.12126 8.46031 8.72497 8.75214 10.06335 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.021951 B = 0.004163 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.278388 B = 6724.247119 C = 7533.326719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.732 5.732 3 C 0.420 3.580 4 C -0.248 4.248 5 C -0.002 4.002 6 C -0.141 4.141 7 C -0.005 4.005 8 C -0.259 4.259 9 C 0.106 3.894 10 F -0.166 7.166 11 C -0.195 4.195 12 C 0.129 3.871 13 C -0.455 4.455 14 H 0.084 0.916 15 C 0.076 3.924 16 N -0.786 5.786 17 Si 0.912 3.088 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.264 1.264 21 C -0.202 4.202 22 C 0.359 3.641 23 F -0.102 7.102 24 N -0.577 5.577 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.405 0.595 29 H 0.136 0.864 30 H 0.145 0.855 31 H 0.101 0.899 32 H 0.130 0.870 33 H 0.284 0.716 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.917 -10.390 -1.871 14.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.366 5.366 3 C 0.184 3.816 4 C -0.273 4.273 5 C -0.028 4.028 6 C -0.147 4.147 7 C -0.006 4.006 8 C -0.280 4.280 9 C 0.087 3.913 10 F -0.145 7.145 11 C -0.215 4.215 12 C 0.126 3.874 13 C -0.484 4.484 14 H 0.102 0.898 15 C -0.144 4.144 16 N -0.410 5.410 17 Si 0.736 3.264 18 H -0.186 1.186 19 H -0.202 1.202 20 H -0.188 1.188 21 C -0.221 4.221 22 C 0.206 3.794 23 F -0.081 7.081 24 N -0.300 5.300 25 H 0.074 0.926 26 H 0.096 0.904 27 H 0.075 0.925 28 H 0.240 0.760 29 H 0.154 0.846 30 H 0.162 0.838 31 H 0.120 0.880 32 H 0.148 0.852 33 H 0.096 0.904 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.680 -10.840 -1.854 14.651 hybrid contribution 0.639 0.748 0.253 1.015 sum -9.042 -10.093 -1.601 13.645 Atomic orbital electron populations 1.21581 0.78834 1.02702 1.01531 1.44168 1.05662 1.05122 1.81652 1.17762 0.86180 0.86679 0.90941 1.21284 1.00865 0.91282 1.13839 1.21362 0.92053 0.98323 0.91048 1.19441 0.93988 0.92706 1.08566 1.17691 0.95875 0.90584 0.96493 1.20163 1.06648 0.95147 1.06009 1.17518 0.98127 0.85875 0.89810 1.91337 1.93436 1.63022 1.66734 1.21351 1.00177 1.03221 0.96750 1.17259 0.90375 0.89660 0.90116 1.19586 1.14866 0.92886 1.21018 0.89794 1.25971 0.98209 0.95645 0.94541 1.69805 1.34659 1.00902 1.35663 0.86298 0.81960 0.77961 0.80197 1.18599 1.20231 1.18821 1.21092 0.98730 1.00416 1.01887 1.17665 0.78325 0.88080 0.95321 1.91648 1.26898 1.96784 1.92727 1.66118 1.07541 1.31583 1.24757 0.92552 0.90439 0.92525 0.76050 0.84648 0.83763 0.88043 0.85235 0.90448 0.88167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.63 9.91 59.85 0.59 1.22 16 2 N -0.73 -7.52 5.88 -67.21 -0.40 -7.92 16 3 C 0.42 5.95 7.64 -155.03 -1.18 4.77 16 4 C -0.25 -3.25 9.31 -39.27 -0.37 -3.62 16 5 C 0.00 -0.04 9.65 -39.01 -0.38 -0.41 16 6 C -0.14 -2.67 5.48 -104.66 -0.57 -3.25 16 7 C -0.01 -0.12 5.32 -104.98 -0.56 -0.68 16 8 C -0.26 -5.82 9.52 -38.89 -0.37 -6.19 16 9 C 0.11 2.58 7.28 -39.55 -0.29 2.30 16 10 F -0.17 -3.91 17.26 2.25 0.04 -3.87 16 11 C -0.19 -5.09 8.66 -38.75 -0.34 -5.42 16 12 C 0.13 3.37 5.57 -106.87 -0.60 2.77 16 13 C -0.45 -11.76 9.05 -37.74 -0.34 -12.10 16 14 H 0.08 2.08 7.91 -52.49 -0.41 1.66 16 15 C 0.08 1.85 5.14 -17.34 -0.09 1.76 16 16 N -0.79 -19.91 10.96 55.55 0.61 -19.30 16 17 Si 0.91 18.25 29.59 -169.99 -5.03 13.22 16 18 H -0.26 -5.22 7.11 56.52 0.40 -4.81 16 19 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 20 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 21 C -0.20 -4.87 8.61 -38.52 -0.33 -5.21 16 22 C 0.36 6.86 8.29 -17.01 -0.14 6.72 16 23 F -0.10 -2.07 15.93 2.25 0.04 -2.04 16 24 N -0.58 -9.96 10.39 -12.51 -0.13 -10.09 16 25 H 0.06 0.34 7.92 -51.93 -0.41 -0.07 16 26 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.35 7.92 -51.93 -0.41 -0.06 16 28 H 0.40 3.78 8.95 -40.82 -0.37 3.41 16 29 H 0.14 1.32 6.67 -52.49 -0.35 0.97 16 30 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 31 H 0.10 2.04 8.04 -52.48 -0.42 1.62 16 32 H 0.13 3.50 6.16 -52.49 -0.32 3.18 16 33 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 34 H 0.10 2.35 7.80 -52.48 -0.41 1.94 16 LS Contribution 306.62 15.07 4.62 4.62 Total: -1.00 -28.70 306.62 -8.30 -37.00 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -3.09 Total: 5.70 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -4.96 Total: -17.33 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.08 Total: -37.30 kcal Atomic # 9 Polarization: -5.98 SS G_CDS: 0.07 Total: -5.91 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.70 -8.30 -37.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239436730.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.494 kcal (2) G-P(sol) polarization free energy of solvation -28.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds