Wall clock time and date at job start Tue Mar 31 2020 08:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.38901 * 120.00018 * 2 1 4 4 C 1.39179 * 119.55690 * 359.97438 * 3 2 1 5 5 C 1.38135 * 119.28023 * 179.97438 * 4 3 2 6 6 C 1.39860 * 118.42666 * 0.02562 * 5 4 3 7 7 C 1.48345 * 120.46263 * 179.97438 * 6 5 4 8 8 C 1.39725 * 119.99247 * 310.00589 * 7 6 5 9 9 C 1.38619 * 120.34997 * 180.02562 * 8 7 6 10 10 F 1.35095 * 119.83376 * 179.97438 * 9 8 7 11 11 C 1.37949 * 120.32974 * 0.02562 * 9 8 7 12 12 C 1.40725 * 119.96892 * 0.02562 * 11 9 8 13 13 C 1.41432 * 120.17110 * 180.02562 * 12 11 9 14 14 H 1.07994 * 119.99875 * 204.46569 * 13 12 11 15 15 C 1.39924 * 119.99754 * 24.46618 * 13 12 11 16 16 N 1.30837 * 120.00186 * 17.85508 * 15 13 12 17 17 Si 1.86797 * 119.99912 * 197.86127 * 15 13 12 18 18 H 1.48496 * 109.47254 * 59.99796 * 17 15 13 19 19 H 1.48499 * 109.47079 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46920 * 300.00053 * 17 15 13 21 21 C 1.38775 * 119.98832 * 130.02141 * 7 6 5 22 22 C 1.39497 * 119.07105 * 0.27525 * 6 5 4 23 23 F 1.35101 * 119.68642 * 179.70456 * 22 6 5 24 24 N 1.31992 * 120.62171 * 359.42800 * 22 6 5 25 25 H 1.08995 * 109.46916 * 60.00057 * 1 2 3 26 26 H 1.09003 * 109.46792 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46838 * 300.00082 * 1 2 3 28 28 H 0.97001 * 120.00342 * 180.02562 * 2 1 3 29 29 H 1.08000 * 120.36308 * 0.02562 * 4 3 2 30 30 H 1.07993 * 120.78334 * 179.97438 * 5 4 3 31 31 H 1.08003 * 119.82679 * 0.02562 * 8 7 6 32 32 H 1.07994 * 120.01802 * 179.72649 * 11 9 8 33 33 H 0.96992 * 120.00026 * 179.97438 * 16 15 13 34 34 H 1.08004 * 120.16182 * 0.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1595 1.2029 0.0000 4 6 1.4543 2.4028 -0.0005 5 6 2.1507 3.5958 0.0000 6 6 3.5486 3.5506 0.0005 7 6 4.3416 4.8043 0.0006 8 6 4.0578 5.8103 -0.9267 9 6 4.7944 6.9845 -0.9337 10 9 4.5114 7.9501 -1.8352 11 6 5.8156 7.1716 -0.0253 12 6 6.1138 6.1670 0.9139 13 6 7.1596 6.3546 1.8475 14 1 7.6523 5.4992 2.2854 15 6 7.5557 7.6484 2.2037 16 7 6.7650 8.6634 1.9660 17 14 9.2133 7.9267 3.0186 18 1 10.2941 7.4566 2.1152 19 1 9.3927 9.3748 3.2940 20 1 9.2708 7.1697 4.2948 21 6 5.3653 4.9776 0.9214 22 6 4.1867 2.3101 -0.0054 23 9 5.5365 2.2521 -0.0110 24 7 3.4842 1.1927 0.0000 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.9500 -0.8400 -0.0004 29 1 0.3743 2.4013 -0.0005 30 1 1.6282 4.5408 -0.0008 31 1 3.2603 5.6723 -1.6419 32 1 6.3892 8.0866 -0.0381 33 1 7.0394 9.5602 2.2133 34 1 5.5870 4.2012 1.6387 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239436730.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:01 Heat of formation + Delta-G solvation = -49.350616 kcal Electronic energy + Delta-G solvation = -21783.871209 eV Core-core repulsion = 18123.540202 eV Total energy + Delta-G solvation = -3660.331006 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.093 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -49.98961 -49.57688 -41.20425 -39.26490 -36.78619 -35.64562 -33.84259 -32.00724 -31.50238 -29.41839 -27.42976 -27.02802 -24.57591 -23.95015 -22.62521 -22.20183 -19.53375 -18.99446 -18.78490 -17.81641 -17.21119 -16.85524 -16.69770 -16.66228 -16.31185 -16.23800 -15.89475 -15.61754 -15.30381 -14.69009 -14.48783 -14.15751 -14.01468 -13.71633 -13.66250 -13.34713 -12.93891 -12.91551 -12.81012 -12.56446 -12.16096 -11.99136 -11.61400 -11.23511 -11.03728 -10.77055 -10.63560 -9.53855 -9.35108 -8.73811 -8.50278 -6.47889 -0.06985 0.20202 0.77311 0.95886 1.38221 1.48856 1.52559 1.95747 2.18342 2.54375 2.72875 2.97748 3.49525 3.56290 3.74276 3.93472 4.06684 4.21340 4.47717 4.51771 4.67901 4.73052 4.73947 4.85416 4.94502 5.00293 5.05541 5.12598 5.24091 5.44398 5.58708 5.70479 5.82083 5.92205 5.98430 6.21842 6.41190 6.53075 6.81094 6.82650 6.95416 8.24570 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.021951 B = 0.004163 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.278388 B = 6724.247119 C = 7533.326719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.721 5.721 3 C 0.419 3.581 4 C -0.229 4.229 5 C 0.003 3.997 6 C -0.174 4.174 7 C 0.010 3.990 8 C -0.254 4.254 9 C 0.098 3.902 10 F -0.163 7.163 11 C -0.223 4.223 12 C 0.106 3.894 13 C -0.491 4.491 14 H 0.083 0.917 15 C 0.037 3.963 16 N -0.817 5.817 17 Si 0.985 3.015 18 H -0.260 1.260 19 H -0.265 1.265 20 H -0.256 1.256 21 C -0.219 4.219 22 C 0.341 3.659 23 F -0.122 7.122 24 N -0.597 5.597 25 H 0.067 0.933 26 H 0.105 0.895 27 H 0.066 0.934 28 H 0.409 0.591 29 H 0.179 0.821 30 H 0.163 0.837 31 H 0.130 0.870 32 H 0.112 0.888 33 H 0.292 0.708 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.288 -11.871 -1.851 17.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.353 5.353 3 C 0.181 3.819 4 C -0.253 4.253 5 C -0.022 4.022 6 C -0.180 4.180 7 C 0.009 3.991 8 C -0.274 4.274 9 C 0.079 3.921 10 F -0.142 7.142 11 C -0.243 4.243 12 C 0.104 3.896 13 C -0.519 4.519 14 H 0.101 0.899 15 C -0.180 4.180 16 N -0.442 5.442 17 Si 0.805 3.195 18 H -0.185 1.185 19 H -0.190 1.190 20 H -0.180 1.180 21 C -0.239 4.239 22 C 0.188 3.812 23 F -0.101 7.101 24 N -0.322 5.322 25 H 0.086 0.914 26 H 0.124 0.876 27 H 0.085 0.915 28 H 0.245 0.755 29 H 0.196 0.804 30 H 0.181 0.819 31 H 0.148 0.852 32 H 0.130 0.870 33 H 0.103 0.897 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.103 -12.361 -1.844 17.398 hybrid contribution 1.111 0.991 0.192 1.501 sum -10.992 -11.370 -1.652 15.901 Atomic orbital electron populations 1.21947 0.76052 1.05081 1.02453 1.44497 1.07309 1.04025 1.79428 1.18270 0.85497 0.88654 0.89439 1.21660 1.02735 0.89733 1.11166 1.21594 0.90449 1.00195 0.90004 1.19305 0.95350 0.90946 1.12415 1.17934 0.94797 0.91710 0.94687 1.20451 1.06686 0.94153 1.06132 1.17681 0.98090 0.86681 0.89612 1.91333 1.93347 1.63044 1.66452 1.21245 1.01651 1.03058 0.98368 1.17564 0.91085 0.90492 0.90507 1.19857 1.16001 0.93900 1.22132 0.89886 1.26834 1.01622 0.94760 0.94746 1.69857 1.36413 1.01533 1.36368 0.85200 0.76744 0.78378 0.79152 1.18464 1.18956 1.18048 1.21178 0.99856 0.99872 1.02945 1.17786 0.77840 0.88888 0.96695 1.91587 1.28478 1.96934 1.93111 1.66157 1.09122 1.30781 1.26120 0.91409 0.87641 0.91547 0.75522 0.80365 0.81911 0.85177 0.87033 0.89688 0.88538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 9.91 127.77 1.27 1.95 16 2 N -0.72 -12.05 5.88 -366.54 -2.16 -14.20 16 3 C 0.42 10.63 7.64 133.09 1.02 11.65 16 4 C -0.23 -5.07 9.31 22.47 0.21 -4.86 16 5 C 0.00 0.07 9.65 22.64 0.22 0.29 16 6 C -0.17 -6.47 5.48 -19.89 -0.11 -6.58 16 7 C 0.01 0.43 5.32 -20.10 -0.11 0.33 16 8 C -0.25 -11.34 9.52 22.72 0.22 -11.13 16 9 C 0.10 4.91 7.28 22.29 0.16 5.07 16 10 F -0.16 -7.71 17.26 44.97 0.78 -6.94 16 11 C -0.22 -12.19 8.66 22.81 0.20 -12.00 16 12 C 0.11 5.84 5.57 -21.32 -0.12 5.72 16 13 C -0.49 -26.58 9.05 23.47 0.21 -26.37 16 14 H 0.08 4.33 7.91 -2.91 -0.02 4.30 16 15 C 0.04 1.85 5.14 85.25 0.44 2.29 16 16 N -0.82 -42.77 10.96 21.82 0.24 -42.53 16 17 Si 0.99 38.03 29.59 68.60 2.03 40.06 16 18 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 19 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 20 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 21 C -0.22 -11.05 8.61 22.96 0.20 -10.85 16 22 C 0.34 13.07 8.29 84.97 0.70 13.78 16 23 F -0.12 -5.19 15.93 44.97 0.72 -4.47 16 24 N -0.60 -19.99 10.39 -193.50 -2.01 -22.00 16 25 H 0.07 0.45 7.92 -2.39 -0.02 0.43 16 26 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 27 H 0.07 0.46 7.92 -2.39 -0.02 0.44 16 28 H 0.41 6.33 8.95 -92.71 -0.83 5.50 16 29 H 0.18 2.40 6.67 -2.91 -0.02 2.38 16 30 H 0.16 3.91 8.06 -2.91 -0.02 3.89 16 31 H 0.13 4.98 8.04 -2.91 -0.02 4.96 16 32 H 0.11 6.39 6.16 -2.91 -0.02 6.37 16 33 H 0.29 13.79 8.30 -92.71 -0.77 13.02 16 34 H 0.10 4.80 7.80 -2.91 -0.02 4.78 16 Total: -1.00 -65.81 306.62 4.43 -61.38 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.33 Total: 19.41 kcal Atomic # 6 Polarization: -35.21 SS G_CDS: 4.50 Total: -30.70 kcal Atomic # 7 Polarization: -74.81 SS G_CDS: -3.93 Total: -78.73 kcal Atomic # 9 Polarization: -12.90 SS G_CDS: 1.49 Total: -11.41 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Total: -65.81 4.43 -61.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239436730.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.029 kcal (2) G-P(sol) polarization free energy of solvation -65.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds