Wall clock time and date at job start Tue Mar 31 2020 08:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86804 * 119.99715 * 2 1 4 4 H 1.48502 * 109.47006 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46760 * 299.99182 * 3 2 1 6 6 H 1.48492 * 109.47535 * 59.99720 * 3 2 1 7 7 C 1.38643 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99908 * 180.02562 * 7 2 1 9 9 O 1.34805 * 119.99991 * 0.02562 * 7 2 1 10 10 C 1.35635 * 117.00107 * 185.06372 * 9 7 2 11 11 C 1.38755 * 120.14327 * 354.39744 * 10 9 7 12 12 C 1.38105 * 120.05961 * 179.74938 * 11 10 9 13 13 C 1.38484 * 120.35812 * 0.25213 * 12 11 10 14 14 C 1.37961 * 120.28593 * 359.97438 * 13 12 11 15 15 C 1.39431 * 119.93186 * 0.02562 * 14 13 12 16 16 C 1.48005 * 120.17518 * 179.97438 * 15 14 13 17 17 C 1.38455 * 120.35655 * 64.99427 * 16 15 14 18 18 C 1.38996 * 120.68156 * 179.97438 * 17 16 15 19 19 C 1.36242 * 121.14455 * 0.02562 * 18 17 16 20 20 C 1.40536 * 120.08131 * 0.02562 * 19 18 17 21 21 C 1.40586 * 121.17227 * 179.97438 * 20 19 18 22 22 C 1.36118 * 119.65507 * 180.02562 * 21 20 19 23 23 C 1.39324 * 120.95567 * 0.02562 * 22 21 20 24 24 C 1.36211 * 120.94600 * 0.02562 * 23 22 21 25 25 C 1.40217 * 119.68237 * 359.67709 * 24 23 22 26 26 H 0.97000 * 120.00505 * 0.02562 * 1 2 3 27 27 H 1.08001 * 119.96450 * 0.02562 * 11 10 9 28 28 H 1.07998 * 119.82511 * 180.22855 * 12 11 10 29 29 H 1.08000 * 119.85579 * 180.02562 * 13 12 11 30 30 H 1.08001 * 120.03180 * 180.02562 * 14 13 12 31 31 H 1.07994 * 119.66037 * 0.02562 * 17 16 15 32 32 H 1.07993 * 119.42427 * 179.97438 * 18 17 16 33 33 H 1.08006 * 119.95621 * 180.02562 * 19 18 17 34 34 H 1.07998 * 120.16935 * 359.97395 * 21 20 19 35 35 H 1.07994 * 119.52426 * 180.02562 * 22 21 20 36 36 H 1.08003 * 119.52230 * 179.97438 * 23 22 21 37 37 H 1.07996 * 120.15919 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3465 0.0006 5 1 1.8908 2.3963 -1.2126 6 1 1.8908 2.3966 1.2124 7 6 2.0088 -1.2007 0.0005 8 1 3.0888 -1.2006 0.0010 9 8 1.3349 -2.3681 0.0005 10 6 2.0695 -3.5033 0.1077 11 6 3.4555 -3.4401 0.0942 12 6 4.2018 -4.5965 0.2087 13 6 3.5746 -5.8250 0.3323 14 6 2.1974 -5.9050 0.3427 15 6 1.4321 -4.7452 0.2279 16 6 -0.0457 -4.8249 0.2379 17 6 -0.7155 -5.2568 1.3700 18 6 -2.1033 -5.3338 1.3870 19 6 -2.8416 -4.9887 0.2952 20 6 -2.2029 -4.5459 -0.8757 21 6 -2.9421 -4.1846 -2.0157 22 6 -2.2916 -3.7604 -3.1336 23 6 -0.9012 -3.6789 -3.1662 24 6 -0.1538 -4.0220 -2.0804 25 6 -0.7898 -4.4575 -0.9091 26 1 -0.4851 0.8400 -0.0004 27 1 3.9511 -2.4853 -0.0014 28 1 5.2804 -4.5426 0.2015 29 1 4.1662 -6.7241 0.4217 30 1 1.7125 -6.8652 0.4397 31 1 -0.1541 -5.5359 2.2493 32 1 -2.6049 -5.6738 2.2809 33 1 -3.9190 -5.0555 0.3297 34 1 -4.0204 -4.2441 -2.0046 35 1 -2.8616 -3.4830 -4.0079 36 1 -0.4089 -3.3396 -4.0657 37 1 0.9234 -3.9544 -2.1198 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239471611.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:38 Heat of formation + Delta-G solvation = 40.611296 kcal Electronic energy + Delta-G solvation = -22227.164811 eV Core-core repulsion = 19092.671624 eV Total energy + Delta-G solvation = -3134.493187 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.105 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.99564 -38.74698 -36.47275 -35.75207 -32.91176 -32.25104 -30.04737 -29.75724 -28.92756 -27.72367 -25.36521 -23.22244 -22.41431 -22.17740 -21.32575 -20.05664 -17.97931 -17.24670 -16.86131 -16.17416 -15.71244 -14.89155 -14.60276 -14.44083 -14.00731 -13.77131 -13.52355 -13.36311 -12.95568 -12.90109 -12.72727 -12.48412 -12.21520 -11.72084 -11.51915 -11.36498 -10.94677 -10.90207 -10.85145 -10.68467 -10.46965 -10.41336 -10.21813 -9.37924 -9.24872 -8.86867 -8.16357 -8.03190 -7.38913 -7.03262 -6.45690 -4.04934 1.05806 1.61644 2.04576 2.33710 2.68875 3.10299 3.11970 3.17026 3.55700 3.93644 4.48173 4.71839 5.04115 5.10055 5.22314 5.29809 5.37308 5.49700 5.57108 5.61702 5.63996 5.79081 5.92274 5.96261 5.98219 6.04450 6.24250 6.29460 6.52804 6.61661 6.65780 6.71672 6.77128 6.83458 6.97557 7.04700 7.06803 7.16106 7.26570 7.33085 7.33336 7.47705 7.59555 7.76425 7.96241 8.98184 9.67283 10.70286 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.011536 B = 0.007540 C = 0.005581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.519169 B = 3712.429175 C = 5016.212675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.044 3.956 3 Si 0.937 3.063 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.396 4.396 8 H 0.092 0.908 9 O -0.158 6.158 10 C 0.165 3.835 11 C -0.237 4.237 12 C -0.068 4.068 13 C -0.217 4.217 14 C -0.057 4.057 15 C -0.141 4.141 16 C 0.018 3.982 17 C -0.126 4.126 18 C -0.110 4.110 19 C -0.124 4.124 20 C -0.045 4.045 21 C -0.121 4.121 22 C -0.112 4.112 23 C -0.132 4.132 24 C -0.064 4.064 25 C -0.029 4.029 26 H 0.269 0.731 27 H 0.129 0.871 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.482 -8.605 -1.762 8.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.162 4.162 3 Si 0.762 3.238 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.472 4.472 8 H 0.109 0.891 9 O -0.060 6.060 10 C 0.110 3.890 11 C -0.256 4.256 12 C -0.087 4.087 13 C -0.236 4.236 14 C -0.075 4.075 15 C -0.142 4.142 16 C 0.018 3.982 17 C -0.144 4.144 18 C -0.128 4.128 19 C -0.142 4.142 20 C -0.045 4.045 21 C -0.139 4.139 22 C -0.130 4.130 23 C -0.150 4.150 24 C -0.082 4.082 25 C -0.029 4.029 26 H 0.079 0.921 27 H 0.146 0.854 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.131 0.869 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.933 -8.361 -1.786 8.766 hybrid contribution 0.595 1.086 0.099 1.242 sum -1.338 -7.276 -1.688 7.588 Atomic orbital electron populations 1.70075 1.05825 1.27488 1.44878 1.25259 0.95773 0.98689 0.96460 0.85713 0.79215 0.80634 0.78281 1.19095 1.20139 1.20154 1.21372 0.91793 0.80870 1.53207 0.89076 1.84016 1.33927 1.11110 1.76970 1.19345 0.89969 0.87483 0.92222 1.21124 0.93528 0.99151 1.11785 1.20823 0.98509 0.92374 0.96944 1.20503 0.94100 0.97001 1.11991 1.20708 0.93382 0.95886 0.97542 1.17778 0.90972 0.91343 1.14157 1.18662 0.91719 0.95307 0.92526 1.21073 0.93962 1.01975 0.97389 1.20618 0.93876 1.00297 0.97996 1.20849 0.99060 1.01295 0.93007 1.17963 0.92509 0.99548 0.94444 1.20853 0.98900 1.01181 0.92934 1.20711 0.94567 0.99722 0.98001 1.20734 0.93902 1.01448 0.98896 1.20976 1.00103 0.95291 0.91793 1.17989 0.92084 0.98882 0.93965 0.92088 0.85373 0.87472 0.87466 0.86908 0.86385 0.86601 0.86406 0.86335 0.86756 0.86661 0.85907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.68 13.67 55.48 0.76 -23.92 16 2 C 0.04 1.19 5.49 -17.52 -0.10 1.09 16 3 Si 0.94 20.41 29.55 -169.99 -5.02 15.38 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 6 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.40 -10.84 9.49 30.88 0.29 -10.54 16 8 H 0.09 2.32 5.21 -52.49 -0.27 2.05 16 9 O -0.16 -4.36 8.37 0.47 0.00 -4.36 16 10 C 0.17 3.90 5.48 -38.69 -0.21 3.69 16 11 C -0.24 -5.05 9.16 -39.44 -0.36 -5.41 16 12 C -0.07 -1.23 10.03 -39.54 -0.40 -1.63 16 13 C -0.22 -3.71 10.03 -39.59 -0.40 -4.10 16 14 C -0.06 -1.03 9.73 -39.24 -0.38 -1.42 16 15 C -0.14 -2.99 4.49 -104.75 -0.47 -3.46 16 16 C 0.02 0.38 4.96 -104.54 -0.52 -0.14 16 17 C -0.13 -2.34 9.69 -39.22 -0.38 -2.72 16 18 C -0.11 -1.81 9.93 -40.02 -0.40 -2.21 16 19 C -0.12 -2.08 9.75 -39.43 -0.38 -2.47 16 20 C -0.04 -0.85 5.74 -106.85 -0.61 -1.47 16 21 C -0.12 -2.04 9.77 -39.46 -0.39 -2.43 16 22 C -0.11 -1.87 9.95 -39.94 -0.40 -2.26 16 23 C -0.13 -2.43 9.95 -39.91 -0.40 -2.83 16 24 C -0.06 -1.34 8.60 -39.57 -0.34 -1.68 16 25 C -0.03 -0.62 5.57 -106.59 -0.59 -1.21 16 26 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.13 2.73 5.64 -52.49 -0.30 2.44 16 28 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 29 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 32 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.12 1.60 8.06 -52.48 -0.42 1.17 16 34 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.12 1.86 8.06 -52.48 -0.42 1.43 16 37 H 0.12 2.69 6.40 -52.49 -0.34 2.35 16 LS Contribution 318.79 15.07 4.80 4.80 Total: -1.00 -30.81 318.79 -9.73 -40.54 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -3.85 Total: 8.73 kcal Atomic # 6 Polarization: -34.76 SS G_CDS: -6.43 Total: -41.19 kcal Atomic # 7 Polarization: -24.68 SS G_CDS: 0.76 Total: -23.92 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: 0.00 Total: -4.36 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.81 -9.73 -40.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239471611.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.154 kcal (2) G-P(sol) polarization free energy of solvation -30.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds