Wall clock time and date at job start Tue Mar 31 2020 06:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13612 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39065 * 120.56387 * 203.05156 * 3 2 1 5 5 C 1.39403 * 119.80003 * 180.27610 * 4 3 2 6 6 C 1.47975 * 119.50307 * 179.68950 * 5 4 3 7 7 C 1.41430 * 120.11418 * 0.02562 * 6 5 4 8 8 C 1.35815 * 119.50990 * 180.02562 * 7 6 5 9 9 C 1.40865 * 119.61482 * 0.02562 * 8 7 6 10 10 N 1.32819 * 132.59034 * 179.97438 * 9 8 7 11 11 C 1.32565 * 109.70578 * 179.97438 * 10 9 8 12 12 N 1.31206 * 109.64025 * 0.02562 * 11 10 9 13 13 N 1.36655 * 120.04448 * 359.97438 * 9 8 7 14 14 C 1.35713 * 120.78493 * 359.72672 * 13 9 8 15 15 C 1.40018 * 120.99967 * 359.71081 * 5 4 3 16 16 C 1.35968 * 121.18832 * 359.97438 * 15 5 4 17 17 C 1.41063 * 120.11407 * 0.02562 * 16 15 5 18 18 C 1.40417 * 120.48565 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99550 * 205.41216 * 18 17 16 20 20 C 1.40262 * 119.99859 * 25.42079 * 18 17 16 21 21 N 1.30655 * 120.00240 * 16.92120 * 20 18 17 22 22 Si 1.86807 * 119.99721 * 196.92040 * 20 18 17 23 23 H 1.48503 * 109.47165 * 265.17954 * 22 20 18 24 24 H 1.48497 * 109.47105 * 25.18062 * 22 20 18 25 25 H 1.48501 * 109.46716 * 145.17987 * 22 20 18 26 26 H 1.08001 * 120.09645 * 359.96491 * 4 3 2 27 27 H 1.07993 * 120.24454 * 359.97438 * 7 6 5 28 28 H 1.07997 * 120.19472 * 180.02562 * 8 7 6 29 29 H 1.08001 * 125.17947 * 180.02562 * 11 10 9 30 30 H 1.07999 * 119.85785 * 180.29935 * 14 13 9 31 31 H 1.08004 * 119.40182 * 179.97438 * 15 5 4 32 32 H 1.08003 * 119.94305 * 180.02562 * 16 15 5 33 33 H 0.97001 * 119.99676 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2748 1.1028 0.4689 5 6 4.6687 1.0886 0.4562 6 6 5.4139 2.2676 0.9503 7 6 4.7144 3.3987 1.4315 8 6 5.4108 4.4744 1.8816 9 6 6.8191 4.4495 1.8626 10 7 7.7388 5.3345 2.2303 11 6 8.9487 4.8378 2.0141 12 7 8.8463 3.6324 1.5062 13 7 7.4777 3.3477 1.3939 14 6 6.7910 2.2656 0.9477 15 6 5.3742 -0.0243 -0.0173 16 6 4.7244 -1.1257 -0.4790 17 6 3.3143 -1.1636 -0.4882 18 6 2.6352 -2.2969 -0.9638 19 1 1.6329 -2.2013 -1.3544 20 6 3.2586 -3.5529 -0.9314 21 7 4.3088 -3.7418 -0.1774 22 14 2.5872 -4.9558 -1.9662 23 1 1.6670 -5.7814 -1.1435 24 1 1.8494 -4.4031 -3.1304 25 1 3.7117 -5.7981 -2.4473 26 1 2.7452 1.9691 0.8370 27 1 3.6346 3.4073 1.4403 28 1 4.8879 5.3437 2.2519 29 1 9.8773 5.3477 2.2242 30 1 7.3267 1.4008 0.5849 31 1 6.4542 -0.0073 -0.0157 32 1 5.2888 -1.9732 -0.8392 33 1 4.7401 -4.6104 -0.1553 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240356850.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:55 Heat of formation + Delta-G solvation = 157.681355 kcal Electronic energy + Delta-G solvation = -20608.039011 eV Core-core repulsion = 17407.374771 eV Total energy + Delta-G solvation = -3200.664240 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.086 amu Computer time = 2.64 seconds Orbital eigenvalues (eV) -42.35132 -38.66006 -37.14110 -35.30724 -34.45658 -33.36689 -31.67465 -30.48724 -29.78067 -28.85761 -25.98781 -23.98308 -23.20927 -22.19433 -21.68153 -20.97058 -18.10486 -17.76138 -17.29033 -16.60952 -15.87991 -15.68242 -15.50390 -14.54480 -14.39049 -14.14071 -13.63439 -13.37555 -13.01496 -12.87120 -12.61172 -12.27031 -12.12290 -11.95502 -11.84688 -11.56949 -11.41136 -11.16199 -11.08405 -10.99107 -10.85836 -10.25600 -10.00494 -9.91369 -9.84129 -9.30483 -8.33612 -8.03961 -7.54145 -7.35169 -4.97321 0.83452 1.07581 1.98668 2.35655 2.37939 2.73529 2.76096 2.82611 3.06075 3.47571 3.60191 3.70771 4.06765 4.16068 4.21995 4.40704 4.89719 4.97613 5.11671 5.15491 5.20001 5.47461 5.53006 5.77814 5.92045 6.05983 6.16247 6.38012 6.41004 6.52338 6.56453 6.58500 6.74626 6.92396 7.00592 7.21519 7.37749 7.49589 7.57886 7.92706 8.10199 8.15768 8.25376 8.60846 9.41556 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.024716 B = 0.003776 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.612728 B = 7414.161491 C = 8470.749211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C 0.297 3.703 3 C -0.184 4.184 4 C 0.008 3.992 5 C -0.203 4.203 6 C -0.005 4.005 7 C -0.063 4.063 8 C -0.107 4.107 9 C 0.257 3.743 10 N -0.560 5.560 11 C 0.221 3.779 12 N -0.356 5.356 13 N -0.262 5.262 14 C 0.052 3.948 15 C -0.058 4.058 16 C -0.160 4.160 17 C 0.152 3.848 18 C -0.403 4.403 19 H 0.092 0.908 20 C 0.071 3.929 21 N -0.744 5.744 22 Si 0.919 3.081 23 H -0.262 1.262 24 H -0.253 1.253 25 H -0.267 1.267 26 H 0.107 0.893 27 H 0.150 0.850 28 H 0.152 0.848 29 H 0.219 0.781 30 H 0.170 0.830 31 H 0.098 0.902 32 H 0.128 0.872 33 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.136 4.887 0.592 7.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.179 5.179 2 C -0.013 4.013 3 C -0.189 4.189 4 C -0.013 4.013 5 C -0.206 4.206 6 C -0.009 4.009 7 C -0.089 4.089 8 C -0.128 4.128 9 C 0.006 3.994 10 N -0.291 5.291 11 C -0.079 4.079 12 N -0.189 5.189 13 N -0.034 5.034 14 C -0.077 4.077 15 C -0.077 4.077 16 C -0.179 4.179 17 C 0.146 3.854 18 C -0.429 4.429 19 H 0.110 0.890 20 C -0.154 4.154 21 N -0.365 5.365 22 Si 0.741 3.259 23 H -0.187 1.187 24 H -0.176 1.176 25 H -0.191 1.191 26 H 0.124 0.876 27 H 0.167 0.833 28 H 0.169 0.831 29 H 0.235 0.765 30 H 0.187 0.813 31 H 0.116 0.884 32 H 0.146 0.854 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.271 4.673 0.669 6.367 hybrid contribution 0.253 -0.776 -0.314 0.874 sum 4.524 3.898 0.355 5.982 Atomic orbital electron populations 1.81064 1.12623 1.10465 1.13745 1.25701 0.92621 0.91527 0.91482 1.16712 0.83338 0.99833 1.19051 1.20549 0.92406 0.94944 0.93432 1.17317 0.91628 0.94279 1.17335 1.18687 0.89991 0.94917 0.97343 1.21438 1.01369 0.91384 0.94660 1.20129 0.87832 1.00905 1.03954 1.21728 0.95138 0.84900 0.97654 1.70803 0.98197 1.30089 1.30002 1.25968 0.97258 0.89992 0.94706 1.78451 0.89501 1.19263 1.31716 1.47383 1.05932 1.12462 1.37670 1.21717 0.91558 0.90543 1.03840 1.20447 0.97812 0.92762 0.96674 1.20905 0.93649 0.98001 1.05389 1.18533 0.91675 0.89524 0.85631 1.19966 1.01701 0.91364 1.29828 0.89015 1.26248 0.93943 1.01263 0.93978 1.69699 1.14965 1.26101 1.25712 0.86063 0.79956 0.79170 0.80709 1.18704 1.17598 1.19128 0.87553 0.83292 0.83073 0.76518 0.81324 0.88365 0.85428 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -10.99 18.54 41.84 0.78 -10.21 16 2 C 0.30 6.24 14.29 -22.47 -0.32 5.92 16 3 C -0.18 -3.70 5.93 -104.27 -0.62 -4.32 16 4 C 0.01 0.14 9.13 -38.84 -0.35 -0.22 16 5 C -0.20 -3.45 5.88 -104.81 -0.62 -4.07 16 6 C -0.01 -0.08 5.88 -104.89 -0.62 -0.69 16 7 C -0.06 -0.83 9.41 -39.24 -0.37 -1.19 16 8 C -0.11 -1.41 10.08 -39.46 -0.40 -1.81 16 9 C 0.26 4.13 7.87 -156.24 -1.23 2.90 16 10 N -0.56 -9.03 11.25 -13.94 -0.16 -9.19 16 11 C 0.22 3.18 12.98 -91.99 -1.19 1.99 16 12 N -0.36 -5.86 12.78 29.25 0.37 -5.49 16 13 N -0.26 -4.35 3.88 -11.74 -0.05 -4.40 16 14 C 0.05 0.80 10.64 -16.03 -0.17 0.63 16 15 C -0.06 -1.03 9.29 -39.73 -0.37 -1.40 16 16 C -0.16 -3.22 8.62 -39.33 -0.34 -3.56 16 17 C 0.15 3.26 5.73 -104.61 -0.60 2.66 16 18 C -0.40 -8.77 8.55 -38.00 -0.33 -9.09 16 19 H 0.09 2.02 7.38 -52.49 -0.39 1.63 16 20 C 0.07 1.44 5.16 -17.29 -0.09 1.35 16 21 N -0.74 -15.22 10.96 55.56 0.61 -14.61 16 22 Si 0.92 15.37 29.59 -169.99 -5.03 10.34 16 23 H -0.26 -4.45 7.11 56.52 0.40 -4.04 16 24 H -0.25 -4.30 7.11 56.52 0.40 -3.89 16 25 H -0.27 -4.30 7.11 56.52 0.40 -3.89 16 26 H 0.11 1.56 6.14 -52.49 -0.32 1.23 16 27 H 0.15 1.59 6.20 -52.49 -0.33 1.27 16 28 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 29 H 0.22 2.07 8.06 -52.49 -0.42 1.65 16 30 H 0.17 2.42 6.07 -52.49 -0.32 2.10 16 31 H 0.10 1.52 6.07 -52.48 -0.32 1.21 16 32 H 0.13 2.61 6.20 -52.48 -0.33 2.29 16 33 H 0.30 5.39 8.29 -40.82 -0.34 5.05 16 LS Contribution 300.25 15.07 4.52 4.52 Total: -1.00 -25.65 300.25 -8.54 -34.19 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -1.98 Total: 5.74 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -7.61 Total: -10.90 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 1.56 Total: -43.89 kcal Atomic # 14 Polarization: 15.37 SS G_CDS: -5.03 Total: 10.34 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -25.65 -8.54 -34.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240356850.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.872 kcal (2) G-P(sol) polarization free energy of solvation -25.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.64 seconds