Wall clock time and date at job start Tue Mar 31 2020 06:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13612 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39065 * 120.56387 * 203.05156 * 3 2 1 5 5 C 1.39403 * 119.80003 * 180.27610 * 4 3 2 6 6 C 1.47975 * 119.50307 * 179.68950 * 5 4 3 7 7 C 1.41430 * 120.11418 * 0.02562 * 6 5 4 8 8 C 1.35815 * 119.50990 * 180.02562 * 7 6 5 9 9 C 1.40865 * 119.61482 * 0.02562 * 8 7 6 10 10 N 1.32819 * 132.59034 * 179.97438 * 9 8 7 11 11 C 1.32565 * 109.70578 * 179.97438 * 10 9 8 12 12 N 1.31206 * 109.64025 * 0.02562 * 11 10 9 13 13 N 1.36655 * 120.04448 * 359.97438 * 9 8 7 14 14 C 1.35713 * 120.78493 * 359.72672 * 13 9 8 15 15 C 1.40018 * 120.99967 * 359.71081 * 5 4 3 16 16 C 1.35968 * 121.18832 * 359.97438 * 15 5 4 17 17 C 1.41063 * 120.11407 * 0.02562 * 16 15 5 18 18 C 1.40417 * 120.48565 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99550 * 205.41216 * 18 17 16 20 20 C 1.40262 * 119.99859 * 25.42079 * 18 17 16 21 21 N 1.30655 * 120.00240 * 16.92120 * 20 18 17 22 22 Si 1.86807 * 119.99721 * 196.92040 * 20 18 17 23 23 H 1.48503 * 109.47165 * 265.17954 * 22 20 18 24 24 H 1.48497 * 109.47105 * 25.18062 * 22 20 18 25 25 H 1.48501 * 109.46716 * 145.17987 * 22 20 18 26 26 H 1.08001 * 120.09645 * 359.96491 * 4 3 2 27 27 H 1.07993 * 120.24454 * 359.97438 * 7 6 5 28 28 H 1.07997 * 120.19472 * 180.02562 * 8 7 6 29 29 H 1.08001 * 125.17947 * 180.02562 * 11 10 9 30 30 H 1.07999 * 119.85785 * 180.29935 * 14 13 9 31 31 H 1.08004 * 119.40182 * 179.97438 * 15 5 4 32 32 H 1.08003 * 119.94305 * 180.02562 * 16 15 5 33 33 H 0.97001 * 119.99676 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2748 1.1028 0.4689 5 6 4.6687 1.0886 0.4562 6 6 5.4139 2.2676 0.9503 7 6 4.7144 3.3987 1.4315 8 6 5.4108 4.4744 1.8816 9 6 6.8191 4.4495 1.8626 10 7 7.7388 5.3345 2.2303 11 6 8.9487 4.8378 2.0141 12 7 8.8463 3.6324 1.5062 13 7 7.4777 3.3477 1.3939 14 6 6.7910 2.2656 0.9477 15 6 5.3742 -0.0243 -0.0173 16 6 4.7244 -1.1257 -0.4790 17 6 3.3143 -1.1636 -0.4882 18 6 2.6352 -2.2969 -0.9638 19 1 1.6329 -2.2013 -1.3544 20 6 3.2586 -3.5529 -0.9314 21 7 4.3088 -3.7418 -0.1774 22 14 2.5872 -4.9558 -1.9662 23 1 1.6670 -5.7814 -1.1435 24 1 1.8494 -4.4031 -3.1304 25 1 3.7117 -5.7981 -2.4473 26 1 2.7452 1.9691 0.8370 27 1 3.6346 3.4073 1.4403 28 1 4.8879 5.3437 2.2519 29 1 9.8773 5.3477 2.2242 30 1 7.3267 1.4008 0.5849 31 1 6.4542 -0.0073 -0.0157 32 1 5.2888 -1.9732 -0.8392 33 1 4.7401 -4.6104 -0.1553 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240356850.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:46 Heat of formation + Delta-G solvation = 148.023026 kcal Electronic energy + Delta-G solvation = -20608.457828 eV Core-core repulsion = 17407.374771 eV Total energy + Delta-G solvation = -3201.083057 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.086 amu Computer time = 2.91 seconds Orbital eigenvalues (eV) -43.52075 -40.02568 -38.45712 -36.93899 -35.90642 -34.52023 -33.04188 -31.89020 -31.06485 -30.19426 -27.41080 -25.22045 -24.48685 -23.55693 -22.89387 -22.37119 -19.60222 -19.13284 -18.51823 -17.84898 -17.09140 -17.07791 -16.76788 -15.75622 -15.65879 -15.53009 -14.92355 -14.73751 -14.58458 -14.17803 -13.90630 -13.61468 -13.56147 -13.40765 -13.32253 -13.07075 -12.79520 -12.50380 -12.35304 -12.23539 -12.11064 -11.72665 -11.41131 -11.28586 -11.12072 -10.59827 -9.61198 -9.52030 -8.98597 -8.74289 -6.53838 -0.33024 -0.07820 0.45901 0.98366 1.21311 1.37247 1.44134 1.51200 1.83877 2.05512 2.10817 2.30589 2.58487 2.73247 3.08324 3.29841 3.57322 3.66649 3.75925 3.92429 4.07268 4.23047 4.35918 4.50407 4.63595 4.84702 4.91730 5.00918 5.07771 5.27972 5.30229 5.41400 5.45291 5.49877 5.73465 5.80453 5.87879 6.04555 6.07419 6.39919 6.56687 6.72891 6.98063 6.99297 7.97575 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.024716 B = 0.003776 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.612728 B = 7414.161491 C = 8470.749211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C 0.305 3.695 3 C -0.203 4.203 4 C 0.012 3.988 5 C -0.189 4.189 6 C -0.012 4.012 7 C -0.055 4.055 8 C -0.102 4.102 9 C 0.244 3.756 10 N -0.578 5.578 11 C 0.226 3.774 12 N -0.384 5.384 13 N -0.278 5.278 14 C 0.052 3.948 15 C -0.054 4.054 16 C -0.178 4.178 17 C 0.134 3.866 18 C -0.443 4.443 19 H 0.076 0.924 20 C 0.045 3.955 21 N -0.770 5.770 22 Si 0.976 3.024 23 H -0.265 1.265 24 H -0.260 1.260 25 H -0.253 1.253 26 H 0.140 0.860 27 H 0.178 0.822 28 H 0.182 0.818 29 H 0.259 0.741 30 H 0.175 0.825 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.955 6.550 1.217 8.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.205 5.205 2 C -0.004 4.004 3 C -0.209 4.209 4 C -0.009 4.009 5 C -0.191 4.191 6 C -0.016 4.016 7 C -0.080 4.080 8 C -0.123 4.123 9 C -0.007 4.007 10 N -0.310 5.310 11 C -0.073 4.073 12 N -0.216 5.216 13 N -0.050 5.050 14 C -0.076 4.076 15 C -0.073 4.073 16 C -0.197 4.197 17 C 0.129 3.871 18 C -0.469 4.469 19 H 0.094 0.906 20 C -0.178 4.178 21 N -0.392 5.392 22 Si 0.796 3.204 23 H -0.189 1.189 24 H -0.184 1.184 25 H -0.177 1.177 26 H 0.157 0.843 27 H 0.195 0.805 28 H 0.200 0.800 29 H 0.274 0.726 30 H 0.192 0.808 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.108 6.348 1.301 8.251 hybrid contribution 0.197 -1.025 -0.401 1.118 sum 5.304 5.323 0.899 7.568 Atomic orbital electron populations 1.81048 1.13218 1.11321 1.14894 1.25892 0.92804 0.90846 0.90837 1.16894 0.82974 1.00729 1.20351 1.20836 0.92599 0.95089 0.92353 1.17478 0.91672 0.94412 1.15533 1.18606 0.89860 0.95044 0.98132 1.21689 1.02671 0.90224 0.93391 1.20514 0.86702 1.01898 1.03141 1.22333 0.96326 0.84756 0.97313 1.70842 0.98860 1.30518 1.30742 1.26812 0.98257 0.89334 0.92923 1.78415 0.89819 1.20495 1.32889 1.47494 1.06194 1.12885 1.38415 1.21888 0.91926 0.90645 1.03151 1.20726 0.99085 0.92206 0.95242 1.20862 0.93253 0.98745 1.06883 1.18799 0.92468 0.90007 0.85846 1.20004 1.01649 0.92740 1.32500 0.90582 1.26789 0.94087 1.02464 0.94442 1.69693 1.15866 1.27081 1.26551 0.85241 0.79514 0.76718 0.78936 1.18931 1.18410 1.17665 0.84264 0.80468 0.80049 0.72589 0.80781 0.86201 0.86415 0.88362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -23.24 18.54 19.01 0.35 -22.89 16 2 C 0.31 12.92 14.29 88.33 1.26 14.18 16 3 C -0.20 -8.18 5.93 -19.64 -0.12 -8.30 16 4 C 0.01 0.39 9.13 22.75 0.21 0.60 16 5 C -0.19 -6.00 5.88 -19.98 -0.12 -6.12 16 6 C -0.01 -0.33 5.88 -20.04 -0.12 -0.45 16 7 C -0.05 -1.21 9.41 22.49 0.21 -1.00 16 8 C -0.10 -2.30 10.08 22.35 0.23 -2.07 16 9 C 0.24 7.15 7.87 134.15 1.06 8.21 16 10 N -0.58 -17.14 11.25 -198.01 -2.23 -19.37 16 11 C 0.23 5.94 12.98 180.83 2.35 8.29 16 12 N -0.38 -11.87 12.78 -61.37 -0.78 -12.65 16 13 N -0.28 -8.61 3.88 -191.07 -0.74 -9.35 16 14 C 0.05 1.50 10.64 83.97 0.89 2.39 16 15 C -0.05 -1.85 9.29 22.17 0.21 -1.65 16 16 C -0.18 -7.24 8.62 22.44 0.19 -7.05 16 17 C 0.13 5.89 5.73 -19.86 -0.11 5.78 16 18 C -0.44 -20.09 8.55 23.29 0.20 -19.89 16 19 H 0.08 3.55 7.38 -2.91 -0.02 3.53 16 20 C 0.05 1.88 5.16 85.36 0.44 2.32 16 21 N -0.77 -32.26 10.96 21.88 0.24 -32.02 16 22 Si 0.98 32.14 29.59 68.60 2.03 34.17 16 23 H -0.26 -8.71 7.11 99.48 0.71 -8.00 16 24 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 25 H -0.25 -7.66 7.11 99.48 0.71 -6.96 16 26 H 0.14 3.57 6.14 -2.91 -0.02 3.55 16 27 H 0.18 2.89 6.20 -2.91 -0.02 2.88 16 28 H 0.18 2.95 8.06 -2.91 -0.02 2.93 16 29 H 0.26 4.04 8.06 -2.91 -0.02 4.02 16 30 H 0.18 4.67 6.07 -2.91 -0.02 4.65 16 31 H 0.12 3.54 6.07 -2.91 -0.02 3.52 16 32 H 0.12 4.96 6.20 -2.91 -0.02 4.94 16 33 H 0.30 11.25 8.29 -92.71 -0.77 10.49 16 Total: -1.00 -56.22 300.25 6.84 -49.38 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 1.19 Total: 17.49 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: 6.78 Total: -4.77 kcal Atomic # 7 Polarization: -93.11 SS G_CDS: -3.16 Total: -96.27 kcal Atomic # 14 Polarization: 32.14 SS G_CDS: 2.03 Total: 34.17 kcal Total: -56.22 6.84 -49.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240356850.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.404 kcal (2) G-P(sol) polarization free energy of solvation -56.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.92 seconds