Wall clock time and date at job start Tue Mar 31 2020 06:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39059 * 120.56377 * 241.61392 * 3 2 1 5 5 C 1.39418 * 119.79748 * 180.28047 * 4 3 2 6 6 C 1.47956 * 119.49961 * 179.68333 * 5 4 3 7 7 C 1.41442 * 120.50683 * 359.74658 * 6 5 4 8 8 N 1.30938 * 120.09160 * 179.74937 * 7 6 5 9 9 C 1.34088 * 121.20045 * 0.53512 * 8 7 6 10 10 C 1.38832 * 132.25337 * 179.72397 * 9 8 7 11 11 C 1.38790 * 107.66355 * 180.02562 * 10 9 8 12 12 N 1.31339 * 108.97337 * 359.97438 * 11 10 9 13 13 N 1.37171 * 120.90073 * 359.71885 * 9 8 7 14 14 C 1.36285 * 119.95350 * 0.02562 * 13 9 8 15 15 C 1.40017 * 121.00007 * 359.70653 * 5 4 3 16 16 C 1.35972 * 121.19160 * 0.02562 * 15 5 4 17 17 C 1.41067 * 120.10963 * 0.02562 * 16 15 5 18 18 C 1.40399 * 120.48655 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00369 * 154.62650 * 18 17 16 20 20 C 1.40259 * 120.00047 * 334.62652 * 18 17 16 21 21 N 1.30657 * 119.99820 * 334.60163 * 20 18 17 22 22 Si 1.86805 * 119.99967 * 154.60671 * 20 18 17 23 23 H 1.48504 * 109.46945 * 180.02562 * 22 20 18 24 24 H 1.48500 * 109.47012 * 299.99868 * 22 20 18 25 25 H 1.48498 * 109.47180 * 59.99867 * 22 20 18 26 26 H 1.07992 * 120.10176 * 359.97438 * 4 3 2 27 27 H 1.08000 * 119.94625 * 0.02562 * 7 6 5 28 28 H 1.08003 * 126.16528 * 359.97428 * 10 9 8 29 29 H 1.08002 * 125.51479 * 180.02562 * 11 10 9 30 30 H 1.07998 * 120.56866 * 179.97438 * 14 13 9 31 31 H 1.07997 * 119.41150 * 180.02562 * 15 5 4 32 32 H 1.07996 * 119.94437 * 179.97438 * 16 15 5 33 33 H 0.96999 * 120.00280 * 354.18358 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2749 0.5702 1.0534 5 6 4.6689 0.5672 1.0342 6 6 5.4143 1.1813 2.1551 7 6 4.7234 1.7732 3.2380 8 7 5.3913 2.3100 4.2281 9 6 6.7321 2.3219 4.2359 10 6 7.6560 2.8215 5.1438 11 6 8.9233 2.5571 4.6436 12 7 8.8070 1.9308 3.4950 13 7 7.4475 1.7653 3.2063 14 6 6.7948 1.1906 2.1570 15 6 5.3742 -0.0078 -0.0300 16 6 4.7242 -0.5805 -1.0779 17 6 3.3140 -0.6035 -1.1088 18 6 2.6347 -1.1933 -2.1867 19 1 1.6353 -1.5792 -2.0492 20 6 3.2538 -1.2814 -3.4422 21 7 4.1900 -0.4310 -3.7699 22 14 2.7396 -2.6143 -4.6457 23 1 3.5399 -2.4926 -5.8907 24 1 2.9730 -3.9483 -4.0362 25 1 1.2977 -2.4622 -4.9666 26 1 2.7456 1.0179 1.8815 27 1 3.6435 1.7784 3.2504 28 1 7.4293 3.3258 6.0715 29 1 9.8546 2.8226 5.1219 30 1 7.3481 0.7498 1.3409 31 1 6.4541 0.0038 -0.0184 32 1 5.2883 -1.0177 -1.8884 33 1 4.3985 0.3115 -3.1815 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240428571.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:55 Heat of formation + Delta-G solvation = 150.669808 kcal Electronic energy + Delta-G solvation = -20652.399039 eV Core-core repulsion = 17451.430756 eV Total energy + Delta-G solvation = -3200.968284 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.086 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.99870 -38.74642 -37.49884 -35.47216 -34.90040 -33.66472 -31.67468 -30.50256 -29.40476 -28.51190 -25.86459 -24.70039 -23.12736 -22.45648 -21.39309 -20.90393 -18.76765 -18.07078 -17.47282 -16.75288 -15.84707 -15.76469 -14.96303 -14.80446 -14.37669 -13.98806 -13.81030 -13.56626 -13.21783 -13.03065 -12.66300 -12.52022 -12.38436 -12.17539 -11.99438 -11.64663 -11.51616 -11.31669 -11.01411 -10.84595 -10.71064 -10.37930 -10.18455 -9.71147 -9.59928 -9.34019 -8.31768 -8.20690 -7.88990 -7.41900 -5.09801 0.69979 0.93747 1.85873 2.28854 2.30263 2.76185 2.86718 2.96850 3.07182 3.55279 3.57238 3.61680 3.95405 4.02204 4.13481 4.32667 4.60287 4.94979 4.98892 5.05963 5.23881 5.42705 5.50277 5.60655 5.68674 5.86998 5.95144 6.21860 6.31989 6.40185 6.50407 6.68735 6.69811 6.95464 7.05929 7.13799 7.25307 7.41605 7.54740 7.60394 7.79536 7.97124 8.07647 8.51040 9.31501 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.024639 B = 0.003802 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.135845 B = 7362.267416 C = 8394.294180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C 0.294 3.706 3 C -0.180 4.180 4 C 0.015 3.985 5 C -0.209 4.209 6 C -0.069 4.069 7 C 0.178 3.822 8 N -0.466 5.466 9 C 0.242 3.758 10 C -0.280 4.280 11 C 0.075 3.925 12 N -0.327 5.327 13 N -0.288 5.288 14 C 0.095 3.905 15 C -0.038 4.038 16 C -0.210 4.210 17 C 0.124 3.876 18 C -0.444 4.444 19 H 0.091 0.909 20 C 0.033 3.967 21 N -0.743 5.743 22 Si 1.066 2.934 23 H -0.266 1.266 24 H -0.266 1.266 25 H -0.268 1.268 26 H 0.108 0.892 27 H 0.178 0.822 28 H 0.155 0.845 29 H 0.191 0.809 30 H 0.175 0.825 31 H 0.100 0.900 32 H 0.118 0.882 33 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.046 1.299 5.656 8.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.173 5.173 2 C -0.016 4.016 3 C -0.185 4.185 4 C -0.006 4.006 5 C -0.212 4.212 6 C -0.075 4.075 7 C -0.007 4.007 8 N -0.176 5.176 9 C 0.013 3.987 10 C -0.311 4.311 11 C -0.101 4.101 12 N -0.153 5.153 13 N -0.057 5.057 14 C -0.039 4.039 15 C -0.058 4.058 16 C -0.229 4.229 17 C 0.118 3.882 18 C -0.469 4.469 19 H 0.109 0.891 20 C -0.195 4.195 21 N -0.363 5.363 22 Si 0.887 3.113 23 H -0.190 1.190 24 H -0.191 1.191 25 H -0.193 1.193 26 H 0.126 0.874 27 H 0.195 0.805 28 H 0.173 0.827 29 H 0.208 0.792 30 H 0.192 0.808 31 H 0.118 0.882 32 H 0.135 0.865 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.208 0.664 4.042 6.626 hybrid contribution 0.163 0.711 1.527 1.692 sum 5.371 1.375 5.569 7.858 Atomic orbital electron populations 1.81071 1.12549 1.13085 1.10608 1.25648 0.92578 0.91692 0.91698 1.16609 0.83394 1.16304 1.02227 1.20571 0.92353 0.93038 0.94611 1.17146 0.91564 1.15624 0.96824 1.19516 0.90742 1.00183 0.97062 1.23619 1.01033 0.88984 0.87060 1.68061 1.03900 1.19108 1.26560 1.20708 0.88530 0.98893 0.90557 1.20837 0.89675 1.16739 1.03894 1.23681 0.98745 0.95345 0.92326 1.77813 0.89540 1.28403 1.19535 1.46928 1.07137 1.36442 1.15207 1.22172 0.91889 0.98731 0.91099 1.20353 0.97804 0.94896 0.92705 1.20768 0.93539 1.07979 1.00588 1.18516 0.91458 0.87602 0.90668 1.21063 1.03396 1.27239 0.95168 0.89067 1.27522 0.92163 1.00507 0.99314 1.70426 1.19396 1.07916 1.38524 0.83581 0.77713 0.74527 0.75467 1.19004 1.19097 1.19334 0.87396 0.80522 0.82745 0.79174 0.80753 0.88211 0.86458 0.87591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -10.85 18.54 41.84 0.78 -10.07 16 2 C 0.29 6.16 14.30 -22.47 -0.32 5.84 16 3 C -0.18 -3.57 5.93 -104.27 -0.62 -4.19 16 4 C 0.02 0.26 9.14 -38.84 -0.35 -0.09 16 5 C -0.21 -3.47 5.88 -104.81 -0.62 -4.09 16 6 C -0.07 -1.07 5.89 -104.76 -0.62 -1.68 16 7 C 0.18 2.61 10.65 -16.71 -0.18 2.43 16 8 N -0.47 -7.52 10.45 -11.94 -0.12 -7.64 16 9 C 0.24 4.00 7.91 -155.43 -1.23 2.77 16 10 C -0.28 -3.96 10.92 -39.16 -0.43 -4.38 16 11 C 0.08 0.98 11.95 -17.56 -0.21 0.77 16 12 N -0.33 -5.22 12.65 30.49 0.39 -4.83 16 13 N -0.29 -4.79 3.89 -11.64 -0.05 -4.83 16 14 C 0.10 1.48 10.73 -15.64 -0.17 1.31 16 15 C -0.04 -0.66 9.30 -39.73 -0.37 -1.03 16 16 C -0.21 -4.06 7.88 -39.32 -0.31 -4.37 16 17 C 0.12 2.59 5.46 -104.61 -0.57 2.02 16 18 C -0.44 -9.58 8.48 -38.01 -0.32 -9.90 16 19 H 0.09 2.01 7.45 -52.48 -0.39 1.62 16 20 C 0.03 0.67 4.94 -17.29 -0.09 0.59 16 21 N -0.74 -15.77 12.30 55.56 0.68 -15.09 16 22 Si 1.07 17.60 30.01 -169.99 -5.10 12.50 16 23 H -0.27 -4.37 7.11 56.52 0.40 -3.97 16 24 H -0.27 -4.24 7.11 56.52 0.40 -3.84 16 25 H -0.27 -4.35 7.11 56.52 0.40 -3.95 16 26 H 0.11 1.55 6.17 -52.49 -0.32 1.23 16 27 H 0.18 2.10 6.22 -52.49 -0.33 1.78 16 28 H 0.15 1.81 8.06 -52.48 -0.42 1.39 16 29 H 0.19 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.18 2.39 6.18 -52.49 -0.32 2.07 16 31 H 0.10 1.48 6.13 -52.49 -0.32 1.15 16 32 H 0.12 2.32 6.48 -52.49 -0.34 1.98 16 33 H 0.31 6.63 6.68 -40.82 -0.27 6.36 16 LS Contribution 299.95 15.07 4.52 4.52 Total: -1.00 -25.22 299.95 -7.25 -32.47 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -1.94 Total: 7.00 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -6.40 Total: -14.03 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: 1.68 Total: -42.46 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.10 Total: 12.50 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -25.22 -7.25 -32.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240428571.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.139 kcal (2) G-P(sol) polarization free energy of solvation -25.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds