Wall clock time and date at job start Tue Mar 31 2020 06:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39059 * 120.56377 * 241.61392 * 3 2 1 5 5 C 1.39418 * 119.79748 * 180.28047 * 4 3 2 6 6 C 1.47956 * 119.49961 * 179.68333 * 5 4 3 7 7 C 1.41442 * 120.50683 * 359.74658 * 6 5 4 8 8 N 1.30938 * 120.09160 * 179.74937 * 7 6 5 9 9 C 1.34088 * 121.20045 * 0.53512 * 8 7 6 10 10 C 1.38832 * 132.25337 * 179.72397 * 9 8 7 11 11 C 1.38790 * 107.66355 * 180.02562 * 10 9 8 12 12 N 1.31339 * 108.97337 * 359.97438 * 11 10 9 13 13 N 1.37171 * 120.90073 * 359.71885 * 9 8 7 14 14 C 1.36285 * 119.95350 * 0.02562 * 13 9 8 15 15 C 1.40017 * 121.00007 * 359.70653 * 5 4 3 16 16 C 1.35972 * 121.19160 * 0.02562 * 15 5 4 17 17 C 1.41067 * 120.10963 * 0.02562 * 16 15 5 18 18 C 1.40399 * 120.48655 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00369 * 154.62650 * 18 17 16 20 20 C 1.40259 * 120.00047 * 334.62652 * 18 17 16 21 21 N 1.30657 * 119.99820 * 334.60163 * 20 18 17 22 22 Si 1.86805 * 119.99967 * 154.60671 * 20 18 17 23 23 H 1.48504 * 109.46945 * 180.02562 * 22 20 18 24 24 H 1.48500 * 109.47012 * 299.99868 * 22 20 18 25 25 H 1.48498 * 109.47180 * 59.99867 * 22 20 18 26 26 H 1.07992 * 120.10176 * 359.97438 * 4 3 2 27 27 H 1.08000 * 119.94625 * 0.02562 * 7 6 5 28 28 H 1.08003 * 126.16528 * 359.97428 * 10 9 8 29 29 H 1.08002 * 125.51479 * 180.02562 * 11 10 9 30 30 H 1.07998 * 120.56866 * 179.97438 * 14 13 9 31 31 H 1.07997 * 119.41150 * 180.02562 * 15 5 4 32 32 H 1.07996 * 119.94437 * 179.97438 * 16 15 5 33 33 H 0.96999 * 120.00280 * 354.18358 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2749 0.5702 1.0534 5 6 4.6689 0.5672 1.0342 6 6 5.4143 1.1813 2.1551 7 6 4.7234 1.7732 3.2380 8 7 5.3913 2.3100 4.2281 9 6 6.7321 2.3219 4.2359 10 6 7.6560 2.8215 5.1438 11 6 8.9233 2.5571 4.6436 12 7 8.8070 1.9308 3.4950 13 7 7.4475 1.7653 3.2063 14 6 6.7948 1.1906 2.1570 15 6 5.3742 -0.0078 -0.0300 16 6 4.7242 -0.5805 -1.0779 17 6 3.3140 -0.6035 -1.1088 18 6 2.6347 -1.1933 -2.1867 19 1 1.6353 -1.5792 -2.0492 20 6 3.2538 -1.2814 -3.4422 21 7 4.1900 -0.4310 -3.7699 22 14 2.7396 -2.6143 -4.6457 23 1 3.5399 -2.4926 -5.8907 24 1 2.9730 -3.9483 -4.0362 25 1 1.2977 -2.4622 -4.9666 26 1 2.7456 1.0179 1.8815 27 1 3.6435 1.7784 3.2504 28 1 7.4293 3.3258 6.0715 29 1 9.8546 2.8226 5.1219 30 1 7.3481 0.7498 1.3409 31 1 6.4541 0.0038 -0.0184 32 1 5.2883 -1.0177 -1.8884 33 1 4.3985 0.3115 -3.1815 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240428571.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:54 Heat of formation + Delta-G solvation = 139.944375 kcal Electronic energy + Delta-G solvation = -20652.864129 eV Core-core repulsion = 17451.430756 eV Total energy + Delta-G solvation = -3201.433373 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.086 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.15987 -40.13109 -38.77747 -37.11152 -36.33089 -34.89694 -33.00983 -31.96220 -30.68406 -29.79316 -27.27739 -25.95566 -24.39812 -23.88889 -22.65608 -22.16709 -20.27655 -19.35826 -18.78947 -17.97732 -17.14176 -16.95304 -16.34660 -16.25664 -15.64975 -15.35372 -14.97711 -14.82612 -14.74938 -14.33465 -14.02984 -13.78846 -13.75802 -13.71110 -13.51923 -13.09023 -12.89746 -12.67875 -12.23062 -12.11307 -11.99270 -11.78378 -11.63230 -11.13047 -10.81549 -10.66108 -9.78686 -9.60645 -9.38476 -8.69388 -6.66480 -0.48556 -0.26734 0.33133 0.90042 1.14469 1.50767 1.56199 1.74879 1.79414 1.96345 2.19887 2.22436 2.50840 2.64915 2.90559 3.19789 3.43451 3.45598 3.49108 3.82881 4.07891 4.16841 4.31567 4.37878 4.48869 4.62609 4.81816 4.87255 4.96080 5.10695 5.18584 5.33747 5.45291 5.53821 5.59605 5.68238 5.78292 5.92765 6.06936 6.43160 6.47279 6.55167 6.62716 6.87982 7.75444 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.024639 B = 0.003802 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.135845 B = 7362.267416 C = 8394.294180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C 0.302 3.698 3 C -0.200 4.200 4 C 0.018 3.982 5 C -0.187 4.187 6 C -0.082 4.082 7 C 0.183 3.817 8 N -0.480 5.480 9 C 0.217 3.783 10 C -0.280 4.280 11 C 0.089 3.911 12 N -0.351 5.351 13 N -0.307 5.307 14 C 0.106 3.894 15 C -0.033 4.033 16 C -0.222 4.222 17 C 0.113 3.887 18 C -0.487 4.487 19 H 0.074 0.926 20 C 0.012 3.988 21 N -0.766 5.766 22 Si 1.107 2.893 23 H -0.263 1.263 24 H -0.257 1.257 25 H -0.266 1.266 26 H 0.139 0.861 27 H 0.203 0.797 28 H 0.177 0.823 29 H 0.237 0.763 30 H 0.190 0.810 31 H 0.127 0.873 32 H 0.109 0.891 33 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.832 2.008 7.639 11.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.200 5.200 2 C -0.007 4.007 3 C -0.206 4.206 4 C -0.003 4.003 5 C -0.190 4.190 6 C -0.088 4.088 7 C -0.002 4.002 8 N -0.191 5.191 9 C -0.011 4.011 10 C -0.311 4.311 11 C -0.087 4.087 12 N -0.177 5.177 13 N -0.077 5.077 14 C -0.028 4.028 15 C -0.052 4.052 16 C -0.241 4.241 17 C 0.107 3.893 18 C -0.512 4.512 19 H 0.093 0.907 20 C -0.211 4.211 21 N -0.385 5.385 22 Si 0.924 3.076 23 H -0.187 1.187 24 H -0.181 1.181 25 H -0.191 1.191 26 H 0.156 0.844 27 H 0.219 0.781 28 H 0.195 0.805 29 H 0.253 0.747 30 H 0.206 0.794 31 H 0.144 0.856 32 H 0.127 0.873 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.996 1.382 6.047 9.350 hybrid contribution -0.130 0.673 1.279 1.451 sum 6.866 2.055 7.325 10.248 Atomic orbital electron populations 1.81053 1.13196 1.14223 1.11533 1.25873 0.92816 0.91028 0.90997 1.16792 0.82982 1.17551 1.03226 1.20847 0.92639 0.92150 0.94630 1.17283 0.91506 1.13652 0.96554 1.19369 0.90795 1.01464 0.97150 1.23995 1.02144 0.87785 0.86236 1.68125 1.03961 1.19917 1.27074 1.21242 0.89097 0.99504 0.91290 1.21326 0.89670 1.15898 1.04229 1.24465 1.00156 0.93096 0.90995 1.77794 0.89410 1.29404 1.21073 1.47102 1.07489 1.37453 1.15627 1.22486 0.92175 0.97086 0.91043 1.20648 0.99285 0.93436 0.91818 1.20727 0.92969 1.09114 1.01310 1.18780 0.92350 0.87291 0.90881 1.21042 1.03322 1.30440 0.96409 0.90738 1.28462 0.91509 1.01120 1.00046 1.70507 1.21105 1.08441 1.38466 0.83086 0.77444 0.73078 0.74009 1.18714 1.18105 1.19070 0.84360 0.78053 0.80532 0.74737 0.79356 0.85566 0.87299 0.88719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -23.18 18.54 19.00 0.35 -22.83 16 2 C 0.30 12.82 14.30 88.33 1.26 14.08 16 3 C -0.20 -7.96 5.93 -19.63 -0.12 -8.08 16 4 C 0.02 0.59 9.14 22.75 0.21 0.80 16 5 C -0.19 -5.84 5.88 -19.99 -0.12 -5.96 16 6 C -0.08 -2.31 5.89 -19.96 -0.12 -2.42 16 7 C 0.18 4.86 10.65 85.62 0.91 5.77 16 8 N -0.48 -14.26 10.45 -191.68 -2.00 -16.26 16 9 C 0.22 6.57 7.91 133.09 1.05 7.62 16 10 C -0.28 -6.95 10.92 22.54 0.25 -6.70 16 11 C 0.09 1.97 11.95 84.90 1.01 2.99 16 12 N -0.35 -10.16 12.65 -57.46 -0.73 -10.89 16 13 N -0.31 -9.41 3.89 -190.73 -0.74 -10.15 16 14 C 0.11 3.02 10.73 83.96 0.90 3.92 16 15 C -0.03 -1.09 9.30 22.17 0.21 -0.88 16 16 C -0.22 -8.67 7.88 22.44 0.18 -8.50 16 17 C 0.11 4.84 5.46 -19.86 -0.11 4.73 16 18 C -0.49 -21.96 8.48 23.29 0.20 -21.76 16 19 H 0.07 3.49 7.45 -2.91 -0.02 3.47 16 20 C 0.01 0.51 4.94 85.36 0.42 0.93 16 21 N -0.77 -33.60 12.30 21.88 0.27 -33.33 16 22 Si 1.11 36.38 30.01 68.60 2.06 38.44 16 23 H -0.26 -8.42 7.11 99.48 0.71 -7.71 16 24 H -0.26 -7.95 7.11 99.48 0.71 -7.24 16 25 H -0.27 -8.52 7.11 99.48 0.71 -7.81 16 26 H 0.14 3.60 6.17 -2.91 -0.02 3.58 16 27 H 0.20 4.12 6.22 -2.91 -0.02 4.10 16 28 H 0.18 3.46 8.06 -2.91 -0.02 3.44 16 29 H 0.24 2.74 8.06 -2.91 -0.02 2.72 16 30 H 0.19 4.64 6.18 -2.91 -0.02 4.62 16 31 H 0.13 3.43 6.13 -2.91 -0.02 3.42 16 32 H 0.11 4.42 6.48 -2.91 -0.02 4.40 16 33 H 0.30 13.36 6.68 -92.71 -0.62 12.74 16 Total: -1.00 -55.46 299.95 6.69 -48.77 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 1.34 Total: 19.71 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 6.14 Total: -13.46 kcal Atomic # 7 Polarization: -90.61 SS G_CDS: -2.85 Total: -93.46 kcal Atomic # 14 Polarization: 36.38 SS G_CDS: 2.06 Total: 38.44 kcal Total: -55.46 6.69 -48.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240428571.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.717 kcal (2) G-P(sol) polarization free energy of solvation -55.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds