Wall clock time and date at job start Tue Mar 31 2020 06:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39596 * 120.45904 * 76.62489 * 3 2 1 5 5 C 1.37700 * 120.18930 * 179.70022 * 4 3 2 6 6 C 1.39821 * 121.16633 * 0.55990 * 5 4 3 7 7 C 1.48315 * 119.53367 * 179.71115 * 6 5 4 8 8 C 1.41275 * 120.41013 * 179.70442 * 7 6 5 9 9 N 1.31015 * 120.13127 * 180.02562 * 8 7 6 10 10 C 1.34066 * 121.00167 * 359.97438 * 9 8 7 11 11 C 1.38837 * 132.38019 * 179.97438 * 10 9 8 12 12 C 1.38713 * 107.66309 * 180.02562 * 11 10 9 13 13 N 1.31383 * 108.98699 * 359.97438 * 12 11 10 14 14 N 1.37177 * 120.75395 * 359.97438 * 10 9 8 15 15 C 1.36355 * 119.91859 * 0.02745 * 14 10 9 16 16 C 1.38622 * 120.93273 * 359.43257 * 6 5 4 17 17 C 1.40587 * 119.72807 * 0.27987 * 16 6 5 18 18 C 1.40853 * 120.54993 * 180.02562 * 17 16 6 19 19 H 1.08000 * 119.99709 * 204.49676 * 18 17 16 20 20 C 1.40223 * 119.99919 * 24.49483 * 18 17 16 21 21 N 1.30666 * 120.00372 * 17.44170 * 20 18 17 22 22 Si 1.86803 * 119.99789 * 197.43804 * 20 18 17 23 23 H 1.48497 * 109.47336 * 60.00254 * 22 20 18 24 24 H 1.48508 * 109.46968 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47255 * 300.00130 * 22 20 18 26 26 H 1.07998 * 119.90282 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.41644 * 180.27014 * 5 4 3 28 28 H 1.08000 * 119.92998 * 0.02562 * 8 7 6 29 29 H 1.08002 * 126.16557 * 0.02562 * 11 10 9 30 30 H 1.07998 * 125.50770 * 180.02562 * 12 11 10 31 31 H 1.08000 * 120.49365 * 180.24926 * 15 14 10 32 32 H 1.07997 * 120.13334 * 180.29816 * 16 6 5 33 33 H 0.96995 * 119.99828 * 184.59181 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2757 -0.2774 -1.1707 5 6 4.6527 -0.2692 -1.1658 6 6 5.3705 0.0035 0.0026 7 6 6.8533 -0.0035 -0.0318 8 6 7.5971 0.2756 1.1364 9 7 8.9067 0.2684 1.0996 10 6 9.5641 -0.0020 -0.0371 11 6 10.9168 -0.0726 -0.3417 12 6 11.0292 -0.3931 -1.6866 13 7 9.8255 -0.5175 -2.1984 14 7 8.8807 -0.2794 -1.1937 15 6 7.5171 -0.2812 -1.1942 16 6 4.7160 0.2860 1.1915 17 6 3.3107 0.2937 1.2289 18 6 2.6279 0.5790 2.4273 19 1 1.6220 0.2148 2.5756 20 6 3.2542 1.3359 3.4279 21 7 4.3054 2.0567 3.1404 22 14 2.5856 1.3136 5.1721 23 1 2.6202 -0.0747 5.6978 24 1 3.4195 2.1904 6.0331 25 1 1.1853 1.8080 5.1718 26 1 2.7417 -0.4952 -2.0838 27 1 5.1876 -0.4818 -2.0796 28 1 7.0850 0.4954 2.0615 29 1 11.7341 0.0923 0.3447 30 1 11.9562 -0.5207 -2.2257 31 1 6.9697 -0.5023 -2.0985 32 1 5.2834 0.4995 2.0853 33 1 4.7782 2.5272 3.8446 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240428572.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:52 Heat of formation + Delta-G solvation = 159.037278 kcal Electronic energy + Delta-G solvation = -20850.865388 eV Core-core repulsion = 17650.259945 eV Total energy + Delta-G solvation = -3200.605443 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.086 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -42.09553 -38.64164 -37.33774 -35.30262 -34.50918 -33.70975 -31.99289 -30.24457 -29.37672 -28.22998 -26.19835 -24.50123 -23.75744 -21.67014 -21.24194 -21.05176 -18.16653 -17.90317 -17.41268 -16.70229 -15.94908 -15.82912 -15.46567 -14.52610 -14.23806 -13.84503 -13.49563 -13.46462 -13.02877 -12.90664 -12.81876 -12.51893 -12.21796 -11.93133 -11.73869 -11.57364 -11.47104 -11.28629 -11.13742 -10.89031 -10.73549 -10.36337 -10.07488 -9.70862 -9.55793 -9.37728 -8.11137 -7.98884 -7.42076 -7.20253 -4.90957 0.65464 0.86158 2.05170 2.21065 2.48068 2.73457 2.84768 2.86684 2.96584 3.55541 3.59154 3.79076 4.03904 4.09637 4.26486 4.30944 4.59004 4.98793 5.14349 5.21609 5.29994 5.46208 5.47558 5.66220 5.85099 5.90662 6.06473 6.24608 6.45216 6.53163 6.59272 6.62617 6.75621 6.94602 7.22661 7.41583 7.47251 7.53232 7.62939 7.79121 7.98730 8.22915 8.31468 8.69006 9.57741 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.017660 B = 0.004689 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.139530 B = 5969.918571 C = 7475.485489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C 0.297 3.703 3 C -0.181 4.181 4 C -0.020 4.020 5 C -0.243 4.243 6 C -0.009 4.009 7 C -0.111 4.111 8 C 0.201 3.799 9 N -0.470 5.470 10 C 0.253 3.747 11 C -0.278 4.278 12 C 0.081 3.919 13 N -0.324 5.324 14 N -0.303 5.303 15 C 0.142 3.858 16 C -0.137 4.137 17 C 0.150 3.850 18 C -0.422 4.422 19 H 0.088 0.912 20 C 0.077 3.923 21 N -0.763 5.763 22 Si 0.915 3.085 23 H -0.257 1.257 24 H -0.271 1.271 25 H -0.260 1.260 26 H 0.103 0.897 27 H 0.099 0.901 28 H 0.188 0.812 29 H 0.157 0.843 30 H 0.193 0.807 31 H 0.181 0.819 32 H 0.133 0.867 33 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.316 -2.024 -1.764 10.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.183 5.183 2 C -0.012 4.012 3 C -0.187 4.187 4 C -0.041 4.041 5 C -0.263 4.263 6 C -0.012 4.012 7 C -0.117 4.117 8 C 0.016 3.984 9 N -0.181 5.181 10 C 0.025 3.975 11 C -0.309 4.309 12 C -0.096 4.096 13 N -0.149 5.149 14 N -0.072 5.072 15 C 0.008 3.992 16 C -0.156 4.156 17 C 0.144 3.856 18 C -0.449 4.449 19 H 0.106 0.894 20 C -0.146 4.146 21 N -0.385 5.385 22 Si 0.737 3.263 23 H -0.181 1.181 24 H -0.196 1.196 25 H -0.184 1.184 26 H 0.122 0.878 27 H 0.117 0.883 28 H 0.204 0.796 29 H 0.175 0.825 30 H 0.210 0.790 31 H 0.198 0.802 32 H 0.150 0.850 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.844 -1.906 -2.176 9.305 hybrid contribution 0.219 0.151 0.731 0.778 sum 9.063 -1.755 -1.445 9.344 Atomic orbital electron populations 1.81039 1.12735 1.14600 1.09972 1.25756 0.92706 0.91281 0.91491 1.16978 0.83341 1.23314 0.95045 1.20362 0.93380 0.95261 0.95101 1.20013 0.93314 1.16350 0.96605 1.17992 0.86926 1.01019 0.95218 1.19579 0.96170 1.03667 0.92284 1.23841 0.88105 0.87565 0.98867 1.68251 1.09930 1.17048 1.22861 1.20863 0.93936 0.99843 0.82868 1.20871 0.92565 1.20467 0.97046 1.23730 0.96186 0.95828 0.93820 1.77832 0.96835 1.30702 1.09542 1.47062 1.05844 1.44490 1.09843 1.22128 0.79042 0.96994 1.00997 1.21329 0.93987 1.04030 0.96262 1.18290 0.90966 0.86607 0.89738 1.19806 1.01718 1.25108 0.98274 0.89384 1.26099 0.94384 0.92116 1.02020 1.69672 1.15142 1.17484 1.36222 0.86203 0.80387 0.80044 0.79645 1.18088 1.19591 1.18394 0.87845 0.88258 0.79556 0.82516 0.78995 0.80195 0.84957 0.89390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.54 18.54 41.84 0.78 -10.76 16 2 C 0.30 6.53 14.28 -22.48 -0.32 6.20 16 3 C -0.18 -3.78 5.95 -104.12 -0.62 -4.40 16 4 C -0.02 -0.37 9.74 -39.27 -0.38 -0.75 16 5 C -0.24 -4.15 9.36 -39.19 -0.37 -4.52 16 6 C -0.01 -0.16 5.86 -105.02 -0.62 -0.77 16 7 C -0.11 -1.78 5.85 -105.15 -0.62 -2.40 16 8 C 0.20 3.18 10.65 -16.75 -0.18 3.00 16 9 N -0.47 -7.81 10.47 -11.97 -0.13 -7.93 16 10 C 0.25 4.16 7.91 -155.44 -1.23 2.93 16 11 C -0.28 -3.84 10.91 -39.18 -0.43 -4.26 16 12 C 0.08 1.02 11.94 -17.57 -0.21 0.81 16 13 N -0.32 -4.98 12.66 30.48 0.39 -4.59 16 14 N -0.30 -4.91 3.89 -11.95 -0.05 -4.96 16 15 C 0.14 2.17 10.67 -16.10 -0.17 2.00 16 16 C -0.14 -2.71 8.08 -38.55 -0.31 -3.02 16 17 C 0.15 3.25 5.74 -104.67 -0.60 2.65 16 18 C -0.42 -9.41 8.58 -37.85 -0.32 -9.73 16 19 H 0.09 2.01 7.37 -52.49 -0.39 1.62 16 20 C 0.08 1.59 5.16 -17.30 -0.09 1.50 16 21 N -0.76 -15.66 10.94 55.56 0.61 -15.05 16 22 Si 0.91 15.88 29.60 -169.99 -5.03 10.85 16 23 H -0.26 -4.44 7.11 56.52 0.40 -4.04 16 24 H -0.27 -4.54 7.11 56.52 0.40 -4.14 16 25 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 26 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 27 H 0.10 1.42 6.13 -52.49 -0.32 1.10 16 28 H 0.19 2.74 6.21 -52.49 -0.33 2.41 16 29 H 0.16 1.79 8.06 -52.49 -0.42 1.37 16 30 H 0.19 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.18 2.35 6.15 -52.49 -0.32 2.02 16 32 H 0.13 2.56 4.27 -52.49 -0.22 2.33 16 33 H 0.29 5.44 8.30 -40.82 -0.34 5.10 16 LS Contribution 300.70 15.07 4.53 4.53 Total: -1.00 -25.52 300.70 -7.35 -32.87 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -1.98 Total: 5.81 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -6.46 Total: -10.76 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 1.60 Total: -43.29 kcal Atomic # 14 Polarization: 15.88 SS G_CDS: -5.03 Total: 10.85 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -25.52 -7.35 -32.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240428572.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.904 kcal (2) G-P(sol) polarization free energy of solvation -25.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds