Wall clock time and date at job start Tue Mar 31 2020 06:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39596 * 120.45904 * 76.62489 * 3 2 1 5 5 C 1.37700 * 120.18930 * 179.70022 * 4 3 2 6 6 C 1.39821 * 121.16633 * 0.55990 * 5 4 3 7 7 C 1.48315 * 119.53367 * 179.71115 * 6 5 4 8 8 C 1.41275 * 120.41013 * 179.70442 * 7 6 5 9 9 N 1.31015 * 120.13127 * 180.02562 * 8 7 6 10 10 C 1.34066 * 121.00167 * 359.97438 * 9 8 7 11 11 C 1.38837 * 132.38019 * 179.97438 * 10 9 8 12 12 C 1.38713 * 107.66309 * 180.02562 * 11 10 9 13 13 N 1.31383 * 108.98699 * 359.97438 * 12 11 10 14 14 N 1.37177 * 120.75395 * 359.97438 * 10 9 8 15 15 C 1.36355 * 119.91859 * 0.02745 * 14 10 9 16 16 C 1.38622 * 120.93273 * 359.43257 * 6 5 4 17 17 C 1.40587 * 119.72807 * 0.27987 * 16 6 5 18 18 C 1.40853 * 120.54993 * 180.02562 * 17 16 6 19 19 H 1.08000 * 119.99709 * 204.49676 * 18 17 16 20 20 C 1.40223 * 119.99919 * 24.49483 * 18 17 16 21 21 N 1.30666 * 120.00372 * 17.44170 * 20 18 17 22 22 Si 1.86803 * 119.99789 * 197.43804 * 20 18 17 23 23 H 1.48497 * 109.47336 * 60.00254 * 22 20 18 24 24 H 1.48508 * 109.46968 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47255 * 300.00130 * 22 20 18 26 26 H 1.07998 * 119.90282 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.41644 * 180.27014 * 5 4 3 28 28 H 1.08000 * 119.92998 * 0.02562 * 8 7 6 29 29 H 1.08002 * 126.16557 * 0.02562 * 11 10 9 30 30 H 1.07998 * 125.50770 * 180.02562 * 12 11 10 31 31 H 1.08000 * 120.49365 * 180.24926 * 15 14 10 32 32 H 1.07997 * 120.13334 * 180.29816 * 16 6 5 33 33 H 0.96995 * 119.99828 * 184.59181 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2757 -0.2774 -1.1707 5 6 4.6527 -0.2692 -1.1658 6 6 5.3705 0.0035 0.0026 7 6 6.8533 -0.0035 -0.0318 8 6 7.5971 0.2756 1.1364 9 7 8.9067 0.2684 1.0996 10 6 9.5641 -0.0020 -0.0371 11 6 10.9168 -0.0726 -0.3417 12 6 11.0292 -0.3931 -1.6866 13 7 9.8255 -0.5175 -2.1984 14 7 8.8807 -0.2794 -1.1937 15 6 7.5171 -0.2812 -1.1942 16 6 4.7160 0.2860 1.1915 17 6 3.3107 0.2937 1.2289 18 6 2.6279 0.5790 2.4273 19 1 1.6220 0.2148 2.5756 20 6 3.2542 1.3359 3.4279 21 7 4.3054 2.0567 3.1404 22 14 2.5856 1.3136 5.1721 23 1 2.6202 -0.0747 5.6978 24 1 3.4195 2.1904 6.0331 25 1 1.1853 1.8080 5.1718 26 1 2.7417 -0.4952 -2.0838 27 1 5.1876 -0.4818 -2.0796 28 1 7.0850 0.4954 2.0615 29 1 11.7341 0.0923 0.3447 30 1 11.9562 -0.5207 -2.2257 31 1 6.9697 -0.5023 -2.0985 32 1 5.2834 0.4995 2.0853 33 1 4.7782 2.5272 3.8446 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240428572.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:47 Heat of formation + Delta-G solvation = 147.969849 kcal Electronic energy + Delta-G solvation = -20851.345307 eV Core-core repulsion = 17650.259945 eV Total energy + Delta-G solvation = -3201.085363 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.086 amu Computer time = 5.25 seconds Orbital eigenvalues (eV) -43.23954 -39.98547 -38.67452 -36.97951 -35.97924 -34.97624 -33.31679 -31.74652 -30.59990 -29.51335 -27.71042 -25.75113 -25.04893 -22.95747 -22.71219 -22.22469 -19.62058 -19.28773 -18.73504 -18.02301 -17.27048 -16.99892 -16.83994 -15.81235 -15.63982 -15.08844 -14.81364 -14.73716 -14.56373 -14.44288 -14.02819 -13.80092 -13.63745 -13.44591 -13.37849 -13.08249 -12.89762 -12.72443 -12.33103 -12.23358 -12.04608 -11.83539 -11.52997 -11.18668 -10.80039 -10.66516 -9.52188 -9.40280 -8.88408 -8.55508 -6.52582 -0.57142 -0.36009 0.60757 1.00868 1.07607 1.40968 1.48773 1.53896 1.69724 2.06570 2.15942 2.23208 2.62563 2.70305 2.88790 3.17919 3.42234 3.60731 3.68240 3.80608 4.04466 4.30123 4.37422 4.47622 4.50982 4.72795 4.92114 4.98592 5.05882 5.10965 5.23379 5.31958 5.46810 5.60681 5.74065 5.91304 5.97993 6.12965 6.39798 6.43662 6.60526 6.65840 6.75299 6.99276 8.08212 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.017660 B = 0.004689 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.139530 B = 5969.918571 C = 7475.485489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C 0.304 3.696 3 C -0.205 4.205 4 C -0.019 4.019 5 C -0.232 4.232 6 C 0.004 3.996 7 C -0.128 4.128 8 C 0.198 3.802 9 N -0.485 5.485 10 C 0.222 3.778 11 C -0.276 4.276 12 C 0.097 3.903 13 N -0.343 5.343 14 N -0.318 5.318 15 C 0.158 3.842 16 C -0.156 4.156 17 C 0.132 3.868 18 C -0.460 4.460 19 H 0.069 0.931 20 C 0.053 3.947 21 N -0.781 5.781 22 Si 0.969 3.031 23 H -0.256 1.256 24 H -0.256 1.256 25 H -0.272 1.272 26 H 0.129 0.871 27 H 0.136 0.864 28 H 0.190 0.810 29 H 0.179 0.821 30 H 0.241 0.759 31 H 0.204 0.796 32 H 0.131 0.869 33 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.948 -2.362 -3.079 13.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.212 5.212 2 C -0.005 4.005 3 C -0.212 4.212 4 C -0.040 4.040 5 C -0.251 4.251 6 C 0.001 3.999 7 C -0.134 4.134 8 C 0.014 3.986 9 N -0.195 5.195 10 C -0.005 4.005 11 C -0.306 4.306 12 C -0.080 4.080 13 N -0.167 5.167 14 N -0.088 5.088 15 C 0.024 3.976 16 C -0.175 4.175 17 C 0.126 3.874 18 C -0.487 4.487 19 H 0.087 0.913 20 C -0.169 4.169 21 N -0.404 5.404 22 Si 0.790 3.210 23 H -0.180 1.180 24 H -0.180 1.180 25 H -0.197 1.197 26 H 0.147 0.853 27 H 0.154 0.846 28 H 0.206 0.794 29 H 0.196 0.804 30 H 0.257 0.743 31 H 0.221 0.779 32 H 0.149 0.851 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 11.493 -2.245 -3.499 12.222 hybrid contribution -0.330 0.216 0.953 1.031 sum 11.163 -2.029 -2.546 11.628 Atomic orbital electron populations 1.81014 1.13403 1.15954 1.10856 1.26053 0.93024 0.90625 0.90758 1.17244 0.82877 1.24937 0.96093 1.20667 0.93982 0.94294 0.95019 1.20440 0.93045 1.14065 0.97584 1.18135 0.88014 0.98974 0.94730 1.19351 0.95099 1.05964 0.93024 1.23880 0.88155 0.87465 0.99119 1.68248 1.10069 1.17792 1.23441 1.21360 0.95135 1.00915 0.83062 1.21364 0.92144 1.19033 0.98081 1.24539 0.96843 0.93222 0.93394 1.77822 0.97762 1.31274 1.09860 1.47237 1.06136 1.45377 1.10060 1.22412 0.79238 0.94701 1.01218 1.21315 0.93279 1.05615 0.97306 1.18558 0.92023 0.86843 0.89937 1.19842 1.01498 1.27351 1.00006 0.91305 1.26584 0.94592 0.91451 1.04271 1.69660 1.15699 1.17660 1.37338 0.85415 0.79180 0.80069 0.76381 1.18035 1.17965 1.19701 0.85292 0.84644 0.79364 0.80368 0.74322 0.77932 0.85121 0.88498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -24.97 18.54 19.00 0.35 -24.62 16 2 C 0.30 13.67 14.28 88.33 1.26 14.93 16 3 C -0.21 -8.68 5.95 -19.54 -0.12 -8.80 16 4 C -0.02 -0.67 9.74 22.47 0.22 -0.45 16 5 C -0.23 -7.37 9.36 22.53 0.21 -7.16 16 6 C 0.00 0.14 5.86 -20.12 -0.12 0.02 16 7 C -0.13 -3.95 5.85 -20.21 -0.12 -4.07 16 8 C 0.20 6.22 10.65 85.56 0.91 7.13 16 9 N -0.48 -15.65 10.47 -191.78 -2.01 -17.66 16 10 C 0.22 6.86 7.91 133.10 1.05 7.91 16 11 C -0.28 -6.72 10.91 22.53 0.25 -6.48 16 12 C 0.10 2.03 11.94 84.87 1.01 3.04 16 13 N -0.34 -9.39 12.66 -57.49 -0.73 -10.11 16 14 N -0.32 -9.55 3.89 -191.71 -0.75 -10.30 16 15 C 0.16 4.45 10.67 83.63 0.89 5.34 16 16 C -0.16 -6.27 8.08 22.94 0.19 -6.08 16 17 C 0.13 5.90 5.74 -19.90 -0.11 5.79 16 18 C -0.46 -21.45 8.58 23.39 0.20 -21.24 16 19 H 0.07 3.35 7.37 -2.91 -0.02 3.33 16 20 C 0.05 2.22 5.16 85.35 0.44 2.66 16 21 N -0.78 -32.67 10.94 21.87 0.24 -32.43 16 22 Si 0.97 33.22 29.60 68.60 2.03 35.26 16 23 H -0.26 -8.67 7.11 99.48 0.71 -7.96 16 24 H -0.26 -8.05 7.11 99.48 0.71 -7.34 16 25 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 26 H 0.13 3.79 8.06 -2.91 -0.02 3.77 16 27 H 0.14 3.30 6.13 -2.91 -0.02 3.28 16 28 H 0.19 5.65 6.21 -2.91 -0.02 5.63 16 29 H 0.18 3.45 8.06 -2.91 -0.02 3.42 16 30 H 0.24 2.41 8.06 -2.91 -0.02 2.38 16 31 H 0.20 4.53 6.15 -2.91 -0.02 4.51 16 32 H 0.13 5.20 4.27 -2.91 -0.01 5.19 16 33 H 0.30 11.28 8.30 -92.71 -0.77 10.51 16 Total: -1.00 -56.17 300.70 6.50 -49.67 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 1.19 Total: 17.65 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: 6.17 Total: -7.45 kcal Atomic # 7 Polarization: -92.23 SS G_CDS: -2.89 Total: -95.12 kcal Atomic # 14 Polarization: 33.22 SS G_CDS: 2.03 Total: 35.26 kcal Total: -56.17 6.50 -49.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240428572.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.637 kcal (2) G-P(sol) polarization free energy of solvation -56.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.25 seconds