Wall clock time and date at job start Tue Mar 31 2020 08:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86799 * 120.00106 * 2 1 4 4 H 1.48504 * 109.47041 * 270.00101 * 3 2 1 5 5 H 1.48494 * 109.47293 * 29.99472 * 3 2 1 6 6 H 1.48494 * 109.47349 * 150.00140 * 3 2 1 7 7 C 1.38648 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00349 * 179.97438 * 7 2 1 9 9 O 1.34815 * 119.99701 * 0.02562 * 7 2 1 10 10 C 1.35664 * 116.99793 * 185.06372 * 9 7 2 11 11 C 1.38759 * 120.13926 * 354.40010 * 10 9 7 12 12 C 1.38110 * 120.05062 * 180.30075 * 11 10 9 13 13 C 1.38453 * 120.32867 * 359.67384 * 12 11 10 14 14 C 1.37996 * 120.27595 * 0.02562 * 13 12 11 15 15 C 1.39320 * 119.94419 * 0.02562 * 14 13 12 16 16 C 1.48234 * 120.16052 * 180.02562 * 15 14 13 17 17 C 1.40482 * 119.72459 * 130.00450 * 16 15 14 18 18 C 1.35779 * 120.86697 * 179.97438 * 17 16 15 19 19 C 1.40663 * 119.99157 * 0.02562 * 18 17 16 20 20 C 1.40505 * 121.07328 * 180.02562 * 19 18 17 21 21 C 1.36118 * 119.71596 * 179.97438 * 20 19 18 22 22 C 1.39370 * 121.00527 * 0.02562 * 21 20 19 23 23 C 1.36083 * 120.95879 * 359.97438 * 22 21 20 24 24 C 1.40636 * 119.66223 * 0.02562 * 23 22 21 25 25 C 1.38275 * 119.72935 * 310.01650 * 16 15 14 26 26 H 0.96999 * 120.00360 * 0.02562 * 1 2 3 27 27 H 1.07999 * 119.96996 * 359.97438 * 11 10 9 28 28 H 1.07997 * 119.83236 * 179.70015 * 12 11 10 29 29 H 1.07999 * 119.85963 * 180.02562 * 13 12 11 30 30 H 1.08002 * 120.02960 * 180.02562 * 14 13 12 31 31 H 1.08000 * 119.57003 * 359.97438 * 17 16 15 32 32 H 1.08002 * 120.00382 * 179.97438 * 18 17 16 33 33 H 1.08002 * 120.13741 * 359.97438 * 20 19 18 34 34 H 1.08007 * 119.50058 * 179.97438 * 21 20 19 35 35 H 1.08004 * 119.51906 * 180.02562 * 22 21 20 36 36 H 1.08004 * 120.16645 * 180.27960 * 23 22 21 37 37 H 1.08006 * 120.26512 * 0.03220 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4470 2.6527 0.6999 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2007 0.0005 8 1 3.0888 -1.2007 0.0001 9 8 1.3347 -2.3682 0.0005 10 6 2.0695 -3.5036 0.1078 11 6 3.4556 -3.4403 0.0943 12 6 4.2018 -4.5979 0.1973 13 6 3.5740 -5.8257 0.3213 14 6 2.1964 -5.9037 0.3424 15 6 1.4324 -4.7433 0.2382 16 6 -0.0477 -4.8215 0.2609 17 6 -0.7760 -3.9889 1.1269 18 6 -2.1322 -4.0409 1.1663 19 6 -2.8260 -4.9372 0.3334 20 6 -4.2290 -5.0095 0.3552 21 6 -4.8723 -5.8867 -0.4631 22 6 -4.1602 -6.7183 -1.3255 23 6 -2.8009 -6.6768 -1.3746 24 6 -2.1015 -5.7832 -0.5439 25 6 -0.7000 -5.7135 -0.5702 26 1 -0.4850 0.8400 -0.0004 27 1 3.9511 -2.4856 -0.0021 28 1 5.2803 -4.5450 0.1816 29 1 4.1649 -6.7261 0.4017 30 1 1.7108 -6.8635 0.4396 31 1 -0.2502 -3.2984 1.7697 32 1 -2.6781 -3.3946 1.8377 33 1 -4.7946 -4.3718 1.0184 34 1 -5.9508 -5.9397 -0.4432 35 1 -4.6951 -7.4052 -1.9648 36 1 -2.2622 -7.3239 -2.0510 37 1 -0.1356 -6.3520 -1.2337 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240909897.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:33:43 Heat of formation + Delta-G solvation = 36.619784 kcal Electronic energy + Delta-G solvation = -21532.126019 eV Core-core repulsion = 18397.459747 eV Total energy + Delta-G solvation = -3134.666272 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.105 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.96950 -38.99010 -36.58401 -35.80743 -32.48743 -32.34480 -31.20997 -29.39762 -28.85389 -27.79179 -25.40118 -23.41273 -22.67059 -21.76241 -21.12702 -20.68903 -18.01452 -17.45710 -16.75438 -16.29329 -15.75961 -14.74518 -14.56536 -14.46521 -14.20819 -13.84625 -13.68850 -13.37513 -13.14116 -12.96128 -12.81802 -12.62476 -12.36073 -11.75387 -11.58078 -11.41451 -11.06197 -10.98262 -10.88167 -10.64466 -10.50262 -10.43496 -10.34936 -9.57148 -9.39364 -8.90051 -8.47962 -7.87664 -7.50437 -7.08475 -6.49846 -4.08424 0.91148 1.38254 2.08568 2.32262 2.54527 3.09689 3.10602 3.15106 3.45613 3.91734 4.45087 4.62768 4.95863 5.04636 5.11317 5.16942 5.19808 5.35263 5.49429 5.53205 5.61465 5.72139 5.79652 5.82961 5.95193 6.03648 6.12804 6.21125 6.36288 6.46413 6.63229 6.64141 6.67696 6.71912 6.81581 6.96923 7.07991 7.14050 7.19897 7.23330 7.31355 7.37305 7.53139 7.74887 7.93505 8.94771 9.62994 10.66531 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.013773 B = 0.005476 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.444862 B = 5111.696491 C = 6803.648795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.043 3.957 3 Si 0.939 3.061 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.396 4.396 8 H 0.092 0.908 9 O -0.163 6.163 10 C 0.165 3.835 11 C -0.234 4.234 12 C -0.069 4.069 13 C -0.216 4.216 14 C -0.059 4.059 15 C -0.140 4.140 16 C 0.005 3.995 17 C -0.067 4.067 18 C -0.112 4.112 19 C -0.055 4.055 20 C -0.102 4.102 21 C -0.133 4.133 22 C -0.128 4.128 23 C -0.107 4.107 24 C -0.048 4.048 25 C -0.120 4.120 26 H 0.270 0.730 27 H 0.129 0.871 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.114 0.886 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.152 -9.839 0.454 10.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.162 4.162 3 Si 0.764 3.236 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.472 4.472 8 H 0.109 0.891 9 O -0.065 6.065 10 C 0.110 3.890 11 C -0.253 4.253 12 C -0.087 4.087 13 C -0.235 4.235 14 C -0.077 4.077 15 C -0.142 4.142 16 C 0.005 3.995 17 C -0.085 4.085 18 C -0.130 4.130 19 C -0.055 4.055 20 C -0.120 4.120 21 C -0.151 4.151 22 C -0.146 4.146 23 C -0.125 4.125 24 C -0.048 4.048 25 C -0.138 4.138 26 H 0.080 0.920 27 H 0.147 0.853 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.132 0.868 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.139 0.861 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.603 -9.595 0.434 10.258 hybrid contribution 0.613 0.979 -0.124 1.161 sum -2.990 -8.616 0.310 9.125 Atomic orbital electron populations 1.70041 1.05846 1.27716 1.45120 1.25262 0.95825 0.98732 0.96406 0.85742 0.78981 0.80166 0.78754 1.19884 1.20231 1.19185 1.21346 0.91846 0.80816 1.53186 0.89069 1.83988 1.34042 1.11216 1.77284 1.19323 0.90052 0.87440 0.92180 1.21124 0.93520 0.99146 1.11496 1.20828 0.98550 0.92380 0.96954 1.20523 0.94146 0.97024 1.11766 1.20729 0.93450 0.95911 0.97599 1.17898 0.91201 0.91307 1.13759 1.18638 0.92025 0.94335 0.94468 1.20972 0.93751 0.96422 0.97330 1.20852 0.94448 0.98241 0.99448 1.18099 0.93295 0.96943 0.97162 1.21001 0.93256 0.98543 0.99155 1.20705 0.99481 0.97364 0.97513 1.20700 0.94290 0.99944 0.99674 1.20983 0.94410 0.98389 0.98698 1.17967 0.93351 0.96658 0.96778 1.21227 0.92450 1.00313 0.99796 0.91971 0.85348 0.87416 0.87439 0.86845 0.85480 0.85952 0.86061 0.86678 0.86671 0.86108 0.85962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.17 13.67 55.48 0.76 -23.41 16 2 C 0.04 1.15 5.49 -17.52 -0.10 1.05 16 3 Si 0.94 20.06 29.55 -169.99 -5.02 15.04 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.40 -10.69 9.49 30.88 0.29 -10.39 16 8 H 0.09 2.29 5.21 -52.49 -0.27 2.02 16 9 O -0.16 -4.44 8.09 0.36 0.00 -4.44 16 10 C 0.16 3.90 6.55 -38.73 -0.25 3.64 16 11 C -0.23 -4.97 9.16 -39.44 -0.36 -5.33 16 12 C -0.07 -1.24 10.03 -39.55 -0.40 -1.64 16 13 C -0.22 -3.67 10.03 -39.59 -0.40 -4.07 16 14 C -0.06 -1.06 9.47 -39.27 -0.37 -1.43 16 15 C -0.14 -2.95 5.47 -104.73 -0.57 -3.53 16 16 C 0.01 0.11 5.27 -104.93 -0.55 -0.44 16 17 C -0.07 -1.40 8.67 -39.62 -0.34 -1.74 16 18 C -0.11 -2.09 9.73 -39.55 -0.38 -2.48 16 19 C -0.05 -0.97 5.74 -106.77 -0.61 -1.58 16 20 C -0.10 -1.51 9.76 -39.49 -0.39 -1.89 16 21 C -0.13 -1.75 9.95 -39.92 -0.40 -2.14 16 22 C -0.13 -1.67 9.95 -39.93 -0.40 -2.07 16 23 C -0.11 -1.55 9.77 -39.45 -0.39 -1.94 16 24 C -0.05 -0.83 5.74 -106.85 -0.61 -1.44 16 25 C -0.12 -2.19 9.23 -38.78 -0.36 -2.54 16 26 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.13 2.72 5.64 -52.49 -0.30 2.42 16 28 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 29 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 30 H 0.11 1.75 8.03 -52.49 -0.42 1.32 16 31 H 0.13 2.85 7.66 -52.49 -0.40 2.44 16 32 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 33 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 35 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 36 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 37 H 0.12 1.98 8.02 -52.48 -0.42 1.55 16 LS Contribution 321.41 15.07 4.84 4.84 Total: -1.00 -29.82 321.41 -9.91 -39.73 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -3.91 Total: 8.21 kcal Atomic # 6 Polarization: -33.38 SS G_CDS: -6.59 Total: -39.96 kcal Atomic # 7 Polarization: -24.17 SS G_CDS: 0.76 Total: -23.41 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: 0.00 Total: -4.44 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.82 -9.91 -39.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240909897.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.349 kcal (2) G-P(sol) polarization free energy of solvation -29.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds