Wall clock time and date at job start Tue Mar 31 2020 08:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86799 * 120.00106 * 2 1 4 4 H 1.48504 * 109.47041 * 270.00101 * 3 2 1 5 5 H 1.48494 * 109.47293 * 29.99472 * 3 2 1 6 6 H 1.48494 * 109.47349 * 150.00140 * 3 2 1 7 7 C 1.38648 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00349 * 179.97438 * 7 2 1 9 9 O 1.34815 * 119.99701 * 0.02562 * 7 2 1 10 10 C 1.35664 * 116.99793 * 185.06372 * 9 7 2 11 11 C 1.38759 * 120.13926 * 354.40010 * 10 9 7 12 12 C 1.38110 * 120.05062 * 180.30075 * 11 10 9 13 13 C 1.38453 * 120.32867 * 359.67384 * 12 11 10 14 14 C 1.37996 * 120.27595 * 0.02562 * 13 12 11 15 15 C 1.39320 * 119.94419 * 0.02562 * 14 13 12 16 16 C 1.48234 * 120.16052 * 180.02562 * 15 14 13 17 17 C 1.40482 * 119.72459 * 130.00450 * 16 15 14 18 18 C 1.35779 * 120.86697 * 179.97438 * 17 16 15 19 19 C 1.40663 * 119.99157 * 0.02562 * 18 17 16 20 20 C 1.40505 * 121.07328 * 180.02562 * 19 18 17 21 21 C 1.36118 * 119.71596 * 179.97438 * 20 19 18 22 22 C 1.39370 * 121.00527 * 0.02562 * 21 20 19 23 23 C 1.36083 * 120.95879 * 359.97438 * 22 21 20 24 24 C 1.40636 * 119.66223 * 0.02562 * 23 22 21 25 25 C 1.38275 * 119.72935 * 310.01650 * 16 15 14 26 26 H 0.96999 * 120.00360 * 0.02562 * 1 2 3 27 27 H 1.07999 * 119.96996 * 359.97438 * 11 10 9 28 28 H 1.07997 * 119.83236 * 179.70015 * 12 11 10 29 29 H 1.07999 * 119.85963 * 180.02562 * 13 12 11 30 30 H 1.08002 * 120.02960 * 180.02562 * 14 13 12 31 31 H 1.08000 * 119.57003 * 359.97438 * 17 16 15 32 32 H 1.08002 * 120.00382 * 179.97438 * 18 17 16 33 33 H 1.08002 * 120.13741 * 359.97438 * 20 19 18 34 34 H 1.08007 * 119.50058 * 179.97438 * 21 20 19 35 35 H 1.08004 * 119.51906 * 180.02562 * 22 21 20 36 36 H 1.08004 * 120.16645 * 180.27960 * 23 22 21 37 37 H 1.08006 * 120.26512 * 0.03220 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4470 2.6527 0.6999 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2007 0.0005 8 1 3.0888 -1.2007 0.0001 9 8 1.3347 -2.3682 0.0005 10 6 2.0695 -3.5036 0.1078 11 6 3.4556 -3.4403 0.0943 12 6 4.2018 -4.5979 0.1973 13 6 3.5740 -5.8257 0.3213 14 6 2.1964 -5.9037 0.3424 15 6 1.4324 -4.7433 0.2382 16 6 -0.0477 -4.8215 0.2609 17 6 -0.7760 -3.9889 1.1269 18 6 -2.1322 -4.0409 1.1663 19 6 -2.8260 -4.9372 0.3334 20 6 -4.2290 -5.0095 0.3552 21 6 -4.8723 -5.8867 -0.4631 22 6 -4.1602 -6.7183 -1.3255 23 6 -2.8009 -6.6768 -1.3746 24 6 -2.1015 -5.7832 -0.5439 25 6 -0.7000 -5.7135 -0.5702 26 1 -0.4850 0.8400 -0.0004 27 1 3.9511 -2.4856 -0.0021 28 1 5.2803 -4.5450 0.1816 29 1 4.1649 -6.7261 0.4017 30 1 1.7108 -6.8635 0.4396 31 1 -0.2502 -3.2984 1.7697 32 1 -2.6781 -3.3946 1.8377 33 1 -4.7946 -4.3718 1.0184 34 1 -5.9508 -5.9397 -0.4432 35 1 -4.6951 -7.4052 -1.9648 36 1 -2.2622 -7.3239 -2.0510 37 1 -0.1356 -6.3520 -1.2337 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240909897.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:33:42 Heat of formation + Delta-G solvation = 22.454550 kcal Electronic energy + Delta-G solvation = -21532.740269 eV Core-core repulsion = 18397.459747 eV Total energy + Delta-G solvation = -3135.280522 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.105 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.35287 -40.53963 -38.21645 -37.15826 -34.29472 -33.79255 -32.58129 -30.85177 -30.29078 -29.20873 -27.31772 -24.78204 -24.02435 -23.18604 -22.58562 -22.14730 -19.80944 -19.03286 -18.13986 -17.61943 -17.18856 -16.39185 -16.18870 -15.88460 -15.54287 -15.46822 -15.24018 -14.85301 -14.54030 -14.30594 -14.18308 -14.16022 -13.69261 -13.55145 -13.08782 -12.82540 -12.60272 -12.45377 -12.32340 -12.16633 -11.98657 -11.87163 -11.65636 -11.14688 -10.86165 -10.80069 -9.90929 -9.32089 -8.98052 -8.56553 -8.44958 -6.12222 -0.37801 0.03883 0.61616 0.75829 1.20934 1.33427 1.42287 1.49965 2.14355 2.17547 2.84371 3.14844 3.28117 3.49161 3.72317 3.83355 4.02424 4.10856 4.17923 4.24936 4.30491 4.36819 4.48931 4.52039 4.56657 4.66602 4.71141 4.92302 5.03500 5.06576 5.13419 5.14555 5.31025 5.36383 5.39528 5.55902 5.62573 5.66851 5.73956 5.75501 5.82282 5.97443 6.03853 6.18608 6.23302 6.98510 7.79779 8.75990 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.013773 B = 0.005476 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.444862 B = 5111.696491 C = 6803.648795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.017 4.017 3 Si 1.013 2.987 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.254 1.254 7 C -0.417 4.417 8 H 0.099 0.901 9 O -0.210 6.210 10 C 0.123 3.877 11 C -0.249 4.249 12 C -0.068 4.068 13 C -0.191 4.191 14 C -0.060 4.060 15 C -0.147 4.147 16 C -0.028 4.028 17 C -0.096 4.096 18 C -0.118 4.118 19 C -0.073 4.073 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.115 4.115 24 C -0.067 4.067 25 C -0.112 4.112 26 H 0.270 0.730 27 H 0.119 0.881 28 H 0.146 0.854 29 H 0.154 0.846 30 H 0.145 0.855 31 H 0.090 0.910 32 H 0.130 0.870 33 H 0.138 0.862 34 H 0.153 0.847 35 H 0.155 0.845 36 H 0.147 0.853 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.231 -12.963 -0.669 13.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.215 4.215 3 Si 0.833 3.167 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.178 1.178 7 C -0.493 4.493 8 H 0.116 0.884 9 O -0.116 6.116 10 C 0.072 3.928 11 C -0.268 4.268 12 C -0.086 4.086 13 C -0.209 4.209 14 C -0.078 4.078 15 C -0.148 4.148 16 C -0.028 4.028 17 C -0.114 4.114 18 C -0.136 4.136 19 C -0.073 4.073 20 C -0.137 4.137 21 C -0.137 4.137 22 C -0.136 4.136 23 C -0.133 4.133 24 C -0.067 4.067 25 C -0.130 4.130 26 H 0.079 0.921 27 H 0.137 0.863 28 H 0.164 0.836 29 H 0.172 0.828 30 H 0.163 0.837 31 H 0.108 0.892 32 H 0.148 0.852 33 H 0.156 0.844 34 H 0.170 0.830 35 H 0.173 0.827 36 H 0.165 0.835 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.645 -12.774 -0.683 13.301 hybrid contribution 0.561 1.546 0.205 1.658 sum -3.084 -11.227 -0.478 11.653 Atomic orbital electron populations 1.70201 1.07781 1.28486 1.48208 1.26460 0.96764 1.02370 0.95918 0.84661 0.77891 0.75037 0.79107 1.19036 1.19707 1.17786 1.21801 0.92440 0.81674 1.53381 0.88394 1.83980 1.35196 1.12018 1.80380 1.19937 0.91373 0.87602 0.93880 1.21275 0.92919 1.00392 1.12264 1.21252 1.00348 0.91461 0.95555 1.21111 0.93985 0.98214 1.07590 1.21163 0.94113 0.96024 0.96530 1.18314 0.92101 0.91491 1.12892 1.18732 0.92070 0.95922 0.96082 1.20783 0.94765 0.97255 0.98620 1.21024 0.93805 0.98792 1.00002 1.18363 0.94902 0.96871 0.97174 1.21258 0.92029 0.99909 1.00539 1.21215 1.01466 0.95421 0.95580 1.21225 0.93849 0.99488 0.99014 1.21301 0.95404 0.98062 0.98492 1.18297 0.93232 0.97605 0.97602 1.21463 0.93276 0.99396 0.98831 0.92065 0.86292 0.83636 0.82837 0.83701 0.89183 0.85215 0.84449 0.82979 0.82698 0.83511 0.83852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.62 13.67 21.61 0.30 -55.32 16 2 C -0.02 -0.94 5.49 84.83 0.47 -0.47 16 3 Si 1.01 43.20 29.55 68.60 2.03 45.22 16 4 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 6 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 7 C -0.42 -24.25 9.49 67.92 0.64 -23.61 16 8 H 0.10 5.27 5.21 -2.91 -0.02 5.25 16 9 O -0.21 -12.53 8.09 -21.63 -0.18 -12.70 16 10 C 0.12 6.21 6.55 22.82 0.15 6.36 16 11 C -0.25 -10.92 9.16 22.36 0.20 -10.72 16 12 C -0.07 -2.31 10.03 22.29 0.22 -2.09 16 13 C -0.19 -5.81 10.03 22.26 0.22 -5.59 16 14 C -0.06 -2.07 9.47 22.47 0.21 -1.86 16 15 C -0.15 -6.41 5.47 -19.93 -0.11 -6.52 16 16 C -0.03 -1.22 5.27 -20.06 -0.11 -1.32 16 17 C -0.10 -4.44 8.67 22.25 0.19 -4.24 16 18 C -0.12 -4.79 9.73 22.29 0.22 -4.57 16 19 C -0.07 -2.62 5.74 -21.26 -0.12 -2.74 16 20 C -0.12 -3.38 9.76 22.33 0.22 -3.16 16 21 C -0.12 -2.67 9.95 22.05 0.22 -2.45 16 22 C -0.12 -2.55 9.95 22.04 0.22 -2.33 16 23 C -0.11 -2.99 9.77 22.35 0.22 -2.77 16 24 C -0.07 -2.31 5.74 -21.31 -0.12 -2.43 16 25 C -0.11 -4.11 9.23 22.79 0.21 -3.90 16 26 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 27 H 0.12 5.30 5.64 -2.91 -0.02 5.28 16 28 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 29 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 30 H 0.15 4.01 8.03 -2.91 -0.02 3.98 16 31 H 0.09 4.67 7.66 -2.91 -0.02 4.65 16 32 H 0.13 4.76 8.06 -2.91 -0.02 4.74 16 33 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 34 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 35 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 36 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 37 H 0.14 4.44 8.02 -2.91 -0.02 4.42 16 Total: -1.00 -72.98 321.41 6.39 -66.58 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: 1.09 Total: 30.63 kcal Atomic # 6 Polarization: -77.57 SS G_CDS: 3.16 Total: -74.41 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: 0.30 Total: -55.32 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -0.18 Total: -12.70 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -72.98 6.39 -66.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240909897.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.037 kcal (2) G-P(sol) polarization free energy of solvation -72.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds