Wall clock time and date at job start Tue Mar 31 2020 08:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86797 * 120.00152 * 2 1 4 4 H 1.48504 * 109.47345 * 239.99938 * 3 2 1 5 5 H 1.48506 * 109.47373 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47071 * 119.99902 * 3 2 1 7 7 C 1.39928 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99796 * 162.55990 * 7 2 1 9 9 C 1.41217 * 119.99793 * 342.56268 * 7 2 1 10 10 C 1.39965 * 119.49439 * 333.50989 * 9 7 2 11 11 C 1.39889 * 120.10968 * 179.76623 * 10 9 7 12 12 C 1.40861 * 121.13612 * 180.24548 * 11 10 9 13 13 C 1.36185 * 119.60344 * 180.23838 * 12 11 10 14 14 C 1.39249 * 120.94543 * 0.02562 * 13 12 11 15 15 C 1.36535 * 120.97977 * 359.97438 * 14 13 12 16 16 C 1.39813 * 119.73638 * 0.02562 * 15 14 13 17 17 C 1.46310 * 121.16529 * 179.97438 * 16 15 14 18 18 C 1.48184 * 120.34018 * 0.04049 * 17 16 15 19 19 C 1.39482 * 120.10576 * 309.97801 * 18 17 16 20 20 C 1.37997 * 119.98245 * 179.97438 * 19 18 17 21 21 C 1.38270 * 120.18676 * 359.97438 * 20 19 18 22 22 C 1.38809 * 120.21103 * 0.02562 * 21 20 19 23 23 O 1.35909 * 119.98851 * 180.02562 * 22 21 20 24 24 C 1.38513 * 120.01937 * 359.78120 * 22 21 20 25 25 C 1.36672 * 119.31649 * 180.02562 * 17 16 15 26 26 H 0.97011 * 119.99453 * 0.02562 * 1 2 3 27 27 H 1.08005 * 119.93926 * 0.02562 * 10 9 7 28 28 H 1.08001 * 120.19453 * 0.25681 * 12 11 10 29 29 H 1.08003 * 119.52683 * 180.02562 * 13 12 11 30 30 H 1.08005 * 119.50762 * 179.97438 * 14 13 12 31 31 H 1.08000 * 120.13380 * 180.02562 * 15 14 13 32 32 H 1.07999 * 120.00972 * 0.02562 * 19 18 17 33 33 H 1.07998 * 119.90607 * 179.97438 * 20 19 18 34 34 H 1.08003 * 119.89307 * 180.02562 * 21 20 19 35 35 H 0.96702 * 113.99821 * 89.99741 * 23 22 21 36 36 H 1.08001 * 120.09859 * 180.23678 * 24 22 21 37 37 H 1.08001 * 119.70366 * 180.02562 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0962 1.6964 -1.2125 5 1 1.2774 2.7465 0.0006 6 1 3.0961 1.6963 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0507 -1.2335 -0.2798 9 6 1.3505 -2.4065 0.3676 10 6 0.2481 -2.3500 1.2282 11 6 -0.4158 -3.5250 1.5962 12 6 -1.5305 -3.4927 2.4568 13 6 -2.1504 -4.6561 2.7987 14 6 -1.6979 -5.8790 2.3100 15 6 -0.6205 -5.9465 1.4741 16 6 0.0421 -4.7734 1.1005 17 6 1.2001 -4.8095 0.2070 18 6 1.6958 -6.1011 -0.3240 19 6 1.9316 -7.1691 0.5416 20 6 2.3928 -8.3710 0.0444 21 6 2.6218 -8.5206 -1.3110 22 6 2.3899 -7.4629 -2.1795 23 8 2.6161 -7.6151 -3.5110 24 6 1.9231 -6.2540 -1.6903 25 6 1.8196 -3.6397 -0.1332 26 1 -0.4850 0.8402 -0.0004 27 1 -0.0930 -1.3971 1.6053 28 1 -1.8915 -2.5509 2.8429 29 1 -3.0052 -4.6299 3.4583 30 1 -2.2068 -6.7875 2.5966 31 1 -0.2814 -6.9023 1.1028 32 1 1.7525 -7.0558 1.6006 33 1 2.5753 -9.1970 0.7157 34 1 2.9824 -9.4634 -1.6951 35 1 1.8487 -7.9324 -4.0065 36 1 1.7386 -5.4315 -2.3653 37 1 2.6746 -3.6591 -0.7927 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240925686.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:47 Heat of formation + Delta-G solvation = 8.945253 kcal Electronic energy + Delta-G solvation = -21478.531131 eV Core-core repulsion = 18342.664802 eV Total energy + Delta-G solvation = -3135.866329 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.105 amu Computer time = 3.67 seconds Orbital eigenvalues (eV) -39.70345 -38.65165 -36.58206 -35.70732 -33.61346 -31.93573 -30.30429 -29.71389 -29.08688 -27.70173 -25.33809 -23.02979 -22.36615 -21.81021 -21.12667 -20.06545 -18.22696 -17.23979 -16.30433 -16.00017 -15.91463 -15.26108 -15.07477 -14.88383 -14.35659 -13.79871 -13.40260 -13.28108 -12.79327 -12.54129 -12.35028 -12.25431 -11.93724 -11.84465 -11.53445 -11.37859 -11.21916 -10.95251 -10.82524 -10.54307 -10.40463 -10.04612 -9.71608 -9.59121 -9.27619 -8.83853 -8.54291 -8.29702 -7.54209 -6.91562 -6.71477 -4.44293 1.25458 1.49588 1.85208 2.25528 2.95009 2.99950 3.03172 3.20278 3.80951 3.86229 3.99706 4.37431 4.75155 5.07868 5.13148 5.35901 5.53878 5.54919 5.67554 5.72012 5.74066 5.86582 6.00725 6.16729 6.20403 6.34641 6.53578 6.57933 6.59499 6.64669 6.74559 6.86649 6.94937 6.98260 7.05648 7.23516 7.35394 7.41280 7.48745 7.63618 7.75718 7.85466 8.02041 8.10097 8.46090 8.68133 8.74292 10.02978 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.013276 B = 0.005500 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.553267 B = 5089.593466 C = 6823.280714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.449 4.449 8 H 0.080 0.920 9 C 0.099 3.901 10 C -0.202 4.202 11 C 0.001 3.999 12 C -0.136 4.136 13 C -0.119 4.119 14 C -0.189 4.189 15 C -0.084 4.084 16 C -0.116 4.116 17 C -0.060 4.060 18 C 0.004 3.996 19 C -0.121 4.121 20 C -0.106 4.106 21 C -0.159 4.159 22 C 0.101 3.899 23 O -0.501 6.501 24 C -0.137 4.137 25 C -0.120 4.120 26 H 0.284 0.716 27 H 0.122 0.878 28 H 0.109 0.891 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.128 0.872 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.386 0.614 36 H 0.130 0.870 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.572 -9.812 -0.578 9.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.477 4.477 8 H 0.099 0.901 9 C 0.097 3.903 10 C -0.222 4.222 11 C 0.000 4.000 12 C -0.155 4.155 13 C -0.137 4.137 14 C -0.208 4.208 15 C -0.102 4.102 16 C -0.117 4.117 17 C -0.060 4.060 18 C 0.003 3.997 19 C -0.139 4.139 20 C -0.125 4.125 21 C -0.178 4.178 22 C 0.057 3.943 23 O -0.311 6.311 24 C -0.155 4.155 25 C -0.139 4.139 26 H 0.095 0.905 27 H 0.139 0.861 28 H 0.127 0.873 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.145 0.855 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.241 0.759 36 H 0.148 0.852 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.940 -9.434 -0.471 9.493 hybrid contribution -0.208 0.651 -0.263 0.732 sum 0.732 -8.784 -0.735 8.845 Atomic orbital electron populations 1.69828 1.07627 1.29679 1.33120 1.25924 0.94786 1.01453 0.92417 0.86332 0.80181 0.79983 0.80137 1.18880 1.20168 1.18648 1.19629 0.97954 0.91238 1.38903 0.90143 1.17393 0.92132 0.91350 0.89460 1.21184 1.01551 0.95892 1.03567 1.17925 0.94155 0.92956 0.94940 1.20913 0.96951 0.97296 1.00312 1.20498 0.99625 0.93008 1.00610 1.20350 1.00035 0.96763 1.03636 1.20787 0.95420 0.96901 0.97137 1.18440 0.97832 0.92828 1.02622 1.19158 0.96620 0.90830 0.99419 1.18820 0.95352 0.93450 0.92037 1.21380 0.99894 0.92498 1.00109 1.20910 0.99343 0.97512 0.94690 1.21317 1.03978 0.98571 0.93917 1.18364 0.99488 0.93086 0.83407 1.84823 1.40364 1.89051 1.16865 1.21610 1.00707 0.97690 0.95523 1.21197 1.00344 0.92016 1.00335 0.90490 0.86058 0.87285 0.88121 0.88210 0.87361 0.85456 0.85876 0.86024 0.75866 0.85225 0.87853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.37 11.01 55.55 0.61 -18.76 16 2 C 0.07 1.77 5.10 -17.34 -0.09 1.68 16 3 Si 0.91 17.88 29.59 -169.99 -5.03 12.84 16 4 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 5 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 7 C -0.45 -11.26 8.99 -37.82 -0.34 -11.60 16 8 H 0.08 1.92 7.90 -52.49 -0.41 1.50 16 9 C 0.10 2.51 5.55 -107.02 -0.59 1.92 16 10 C -0.20 -5.11 8.38 -38.32 -0.32 -5.44 16 11 C 0.00 0.01 5.74 -106.88 -0.61 -0.60 16 12 C -0.14 -2.87 9.78 -39.33 -0.38 -3.25 16 13 C -0.12 -2.23 9.95 -39.94 -0.40 -2.63 16 14 C -0.19 -3.46 9.96 -39.82 -0.40 -3.86 16 15 C -0.08 -1.64 8.68 -39.61 -0.34 -1.98 16 16 C -0.12 -2.58 5.88 -104.66 -0.62 -3.19 16 17 C -0.06 -1.28 5.59 -103.13 -0.58 -1.86 16 18 C 0.00 0.06 5.08 -104.93 -0.53 -0.47 16 19 C -0.12 -1.90 7.67 -39.21 -0.30 -2.21 16 20 C -0.11 -1.41 10.03 -39.66 -0.40 -1.81 16 21 C -0.16 -2.11 9.98 -39.36 -0.39 -2.51 16 22 C 0.10 1.49 6.70 -39.27 -0.26 1.22 16 23 O -0.50 -6.53 13.50 -19.45 -0.26 -6.80 16 24 C -0.14 -2.31 9.43 -39.07 -0.37 -2.68 16 25 C -0.12 -2.77 9.10 -39.05 -0.36 -3.12 16 26 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 27 H 0.12 3.19 6.18 -52.48 -0.32 2.86 16 28 H 0.11 2.15 8.06 -52.49 -0.42 1.72 16 29 H 0.10 1.58 8.06 -52.48 -0.42 1.16 16 30 H 0.10 1.54 8.06 -52.48 -0.42 1.12 16 31 H 0.11 1.88 5.69 -52.49 -0.30 1.58 16 32 H 0.13 1.96 7.30 -52.49 -0.38 1.58 16 33 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 34 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 35 H 0.39 3.10 9.06 45.56 0.41 3.51 16 36 H 0.13 2.23 8.04 -52.49 -0.42 1.80 16 37 H 0.10 2.23 8.01 -52.49 -0.42 1.81 16 LS Contribution 317.80 15.07 4.79 4.79 Total: -1.00 -27.88 317.80 -10.27 -38.15 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -3.10 Total: 12.15 kcal Atomic # 6 Polarization: -35.10 SS G_CDS: -7.28 Total: -42.38 kcal Atomic # 7 Polarization: -19.37 SS G_CDS: 0.61 Total: -18.76 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -0.26 Total: -6.80 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.84 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.88 -10.27 -38.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240925686.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.099 kcal (2) G-P(sol) polarization free energy of solvation -27.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.67 seconds